EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000023151 (Gene tree)
Gene ID: 101615285
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 30505 bases
Position: chrJH725523.1:3729103-3759607
Accession: 101615285
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000023360	UPF1_Zn_bind	PF09416.10	5.5e-75	1	1
ENSJJAP00000023360	ResIII	PF04851.15	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000029937	-	3784	XM_004666006	ENSJJAP00000023360	1122 (aa)	XP_004666063	UPI000332ECB3

Gene Model

Click here to download ENSJJAG00000023151's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000023151's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000023151	Upf1	100	98.317	ENSG00000005007	UPF1	100	98.317	Homo_sapiens
ENSJJAG00000023151	Upf1	100	91.378	ENSAPOG00000010916	-	100	91.378	Acanthochromis_polyacanthus
ENSJJAG00000023151	Upf1	100	90.691	ENSAPOG00000023773	upf1	100	90.869	Acanthochromis_polyacanthus
ENSJJAG00000023151	Upf1	100	97.691	ENSAMEG00000011474	UPF1	100	97.691	Ailuropoda_melanoleuca
ENSJJAG00000023151	Upf1	92	93.043	ENSACIG00000010985	-	100	93.050	Amphilophus_citrinellus
ENSJJAG00000023151	Upf1	100	90.434	ENSACIG00000019949	upf1	100	90.869	Amphilophus_citrinellus
ENSJJAG00000023151	Upf1	100	91.467	ENSAOCG00000006352	-	100	91.467	Amphiprion_ocellaris
ENSJJAG00000023151	Upf1	100	90.205	ENSAOCG00000018519	upf1	100	90.694	Amphiprion_ocellaris
ENSJJAG00000023151	Upf1	100	91.467	ENSAPEG00000006292	-	100	91.467	Amphiprion_percula
ENSJJAG00000023151	Upf1	100	90.205	ENSAPEG00000016344	upf1	100	90.694	Amphiprion_percula
ENSJJAG00000023151	Upf1	100	91.467	ENSATEG00000016606	-	100	91.467	Anabas_testudineus
ENSJJAG00000023151	Upf1	100	89.395	ENSATEG00000017867	upf1	100	90.096	Anabas_testudineus
ENSJJAG00000023151	Upf1	94	97.241	ENSAPLG00000009175	UPF1	99	97.241	Anas_platyrhynchos
ENSJJAG00000023151	Upf1	96	96.093	ENSANAG00000024107	UPF1	97	96.093	Aotus_nancymaae
ENSJJAG00000023151	Upf1	100	90.168	ENSACLG00000007181	upf1	100	90.603	Astatotilapia_calliptera
ENSJJAG00000023151	Upf1	100	91.370	ENSACLG00000022630	-	100	91.281	Astatotilapia_calliptera
ENSJJAG00000023151	Upf1	100	92.000	ENSAMXG00000042187	upf1	100	92.444	Astyanax_mexicanus
ENSJJAG00000023151	Upf1	100	98.225	ENSBTAG00000020922	UPF1	100	98.225	Bos_taurus
ENSJJAG00000023151	Upf1	89	50.343	WBGene00004880	smg-2	99	47.811	Caenorhabditis_elegans
ENSJJAG00000023151	Upf1	100	98.317	ENSCJAG00000019627	UPF1	100	98.317	Callithrix_jacchus
ENSJJAG00000023151	Upf1	100	98.142	ENSCAFG00000014578	UPF1	100	98.142	Canis_familiaris
ENSJJAG00000023151	Upf1	100	97.168	ENSCAFG00020012347	UPF1	100	97.168	Canis_lupus_dingo
ENSJJAG00000023151	Upf1	100	97.780	ENSCHIG00000011018	UPF1	100	97.780	Capra_hircus
ENSJJAG00000023151	Upf1	96	97.579	ENSTSYG00000008877	UPF1	99	97.579	Carlito_syrichta
ENSJJAG00000023151	Upf1	94	98.099	ENSCAPG00000005758	UPF1	95	98.099	Cavia_aperea
ENSJJAG00000023151	Upf1	100	96.352	ENSCPOG00000025463	UPF1	100	96.352	Cavia_porcellus
ENSJJAG00000023151	Upf1	100	98.752	ENSCCAG00000032175	UPF1	100	98.752	Cebus_capucinus
ENSJJAG00000023151	Upf1	95	97.290	ENSCATG00000040306	UPF1	98	97.290	Cercocebus_atys
ENSJJAG00000023151	Upf1	96	97.685	ENSCLAG00000004037	UPF1	100	98.954	Chinchilla_lanigera
ENSJJAG00000023151	Upf1	100	97.254	ENSCSAG00000005276	UPF1	100	97.254	Chlorocebus_sabaeus
ENSJJAG00000023151	Upf1	100	95.648	ENSCPBG00000012513	UPF1	100	95.648	Chrysemys_picta_bellii
ENSJJAG00000023151	Upf1	78	77.879	ENSCING00000021399	-	99	77.879	Ciona_intestinalis
ENSJJAG00000023151	Upf1	99	71.718	ENSCSAVG00000006533	-	99	71.718	Ciona_savignyi
ENSJJAG00000023151	Upf1	95	98.131	ENSCANG00000029819	UPF1	99	98.131	Colobus_angolensis_palliatus
ENSJJAG00000023151	Upf1	100	98.310	ENSCGRG00001021067	Upf1	100	98.310	Cricetulus_griseus_chok1gshd
ENSJJAG00000023151	Upf1	95	98.597	ENSCGRG00000013480	Upf1	99	98.597	Cricetulus_griseus_crigri
ENSJJAG00000023151	Upf1	100	91.548	ENSCSEG00000016159	-	100	91.459	Cynoglossus_semilaevis
ENSJJAG00000023151	Upf1	100	85.867	ENSCSEG00000017239	upf1	100	85.956	Cynoglossus_semilaevis
ENSJJAG00000023151	Upf1	100	91.467	ENSCVAG00000010561	upf1	100	91.378	Cyprinodon_variegatus
ENSJJAG00000023151	Upf1	100	92.000	ENSDARG00000016302	upf1	100	92.444	Danio_rerio
ENSJJAG00000023151	Upf1	96	95.167	ENSDORG00000009984	Upf1	96	95.603	Dipodomys_ordii
ENSJJAG00000023151	Upf1	85	70.237	FBgn0030354	Upf1	84	66.699	Drosophila_melanogaster
ENSJJAG00000023151	Upf1	55	85.185	ENSEBUG00000010069	upf1	96	85.024	Eptatretus_burgeri
ENSJJAG00000023151	Upf1	100	97.427	ENSEASG00005006549	UPF1	100	97.427	Equus_asinus_asinus
ENSJJAG00000023151	Upf1	100	97.427	ENSECAG00000010639	UPF1	100	97.427	Equus_caballus
ENSJJAG00000023151	Upf1	100	89.823	ENSELUG00000020917	upf1	100	90.088	Esox_lucius
ENSJJAG00000023151	Upf1	100	90.363	ENSELUG00000012916	-	100	90.813	Esox_lucius
ENSJJAG00000023151	Upf1	100	98.053	ENSFCAG00000009757	UPF1	100	98.053	Felis_catus
ENSJJAG00000023151	Upf1	96	95.014	ENSFALG00000009312	UPF1	99	95.014	Ficedula_albicollis
ENSJJAG00000023151	Upf1	97	96.780	ENSFDAG00000014816	UPF1	100	98.859	Fukomys_damarensis
ENSJJAG00000023151	Upf1	85	92.421	ENSFHEG00000016276	-	96	92.559	Fundulus_heteroclitus
ENSJJAG00000023151	Upf1	100	88.007	ENSFHEG00000006428	upf1	100	88.007	Fundulus_heteroclitus
ENSJJAG00000023151	Upf1	100	91.111	ENSGMOG00000007541	upf1	100	91.911	Gadus_morhua
ENSJJAG00000023151	Upf1	100	95.748	ENSGALG00000003220	UPF1	100	95.748	Gallus_gallus
ENSJJAG00000023151	Upf1	63	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSJJAG00000023151	Upf1	100	90.836	ENSGAFG00000004831	upf1	100	91.192	Gambusia_affinis
ENSJJAG00000023151	Upf1	100	95.904	ENSGAGG00000022217	UPF1	100	95.904	Gopherus_agassizii
ENSJJAG00000023151	Upf1	94	97.816	ENSGGOG00000002608	UPF1	99	97.816	Gorilla_gorilla
ENSJJAG00000023151	Upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSJJAG00000023151	Upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSJJAG00000023151	Upf1	100	97.963	ENSHGLG00000010900	UPF1	100	97.963	Heterocephalus_glaber_female
ENSJJAG00000023151	Upf1	96	95.383	ENSHGLG00100005904	UPF1	99	95.383	Heterocephalus_glaber_male
ENSJJAG00000023151	Upf1	100	90.480	ENSHCOG00000008918	upf1	100	92.057	Hippocampus_comes
ENSJJAG00000023151	Upf1	100	92.444	ENSIPUG00000005108	UPF1	100	92.800	Ictalurus_punctatus
ENSJJAG00000023151	Upf1	100	98.665	ENSSTOG00000009196	UPF1	100	98.665	Ictidomys_tridecemlineatus
ENSJJAG00000023151	Upf1	100	91.556	ENSKMAG00000004962	upf1	100	91.467	Kryptolebias_marmoratus
ENSJJAG00000023151	Upf1	100	91.378	ENSLBEG00000027848	-	100	91.378	Labrus_bergylta
ENSJJAG00000023151	Upf1	100	88.850	ENSLBEG00000014862	upf1	100	89.903	Labrus_bergylta
ENSJJAG00000023151	Upf1	62	96.126	ENSLACG00000008482	UPF1	100	96.126	Latimeria_chalumnae
ENSJJAG00000023151	Upf1	100	93.772	ENSLOCG00000002072	upf1	100	93.772	Lepisosteus_oculatus
ENSJJAG00000023151	Upf1	100	97.961	ENSLAFG00000014963	UPF1	100	97.961	Loxodonta_africana
ENSJJAG00000023151	Upf1	100	98.752	ENSMFAG00000037748	UPF1	100	98.752	Macaca_fascicularis
ENSJJAG00000023151	Upf1	100	98.665	ENSMMUG00000023286	UPF1	100	98.665	Macaca_mulatta
ENSJJAG00000023151	Upf1	100	98.752	ENSMNEG00000000046	UPF1	100	98.752	Macaca_nemestrina
ENSJJAG00000023151	Upf1	94	98.859	ENSMLEG00000028404	UPF1	100	98.859	Mandrillus_leucophaeus
ENSJJAG00000023151	Upf1	100	90.667	ENSMAMG00000006231	-	100	91.111	Mastacembelus_armatus
ENSJJAG00000023151	Upf1	100	89.132	ENSMAMG00000006229	upf1	100	90.096	Mastacembelus_armatus
ENSJJAG00000023151	Upf1	100	91.370	ENSMZEG00005016386	-	100	91.281	Maylandia_zebra
ENSJJAG00000023151	Upf1	100	89.229	ENSMZEG00005003489	upf1	100	90.317	Maylandia_zebra
ENSJJAG00000023151	Upf1	94	96.768	ENSMGAG00000004745	UPF1	100	96.768	Meleagris_gallopavo
ENSJJAG00000023151	Upf1	97	97.153	ENSMAUG00000011398	Upf1	98	97.153	Mesocricetus_auratus
ENSJJAG00000023151	Upf1	100	97.520	ENSMICG00000001659	UPF1	100	97.520	Microcebus_murinus
ENSJJAG00000023151	Upf1	100	99.110	ENSMOCG00000005699	Upf1	100	99.110	Microtus_ochrogaster
ENSJJAG00000023151	Upf1	100	90.027	ENSMMOG00000007881	upf1	100	90.391	Mola_mola
ENSJJAG00000023151	Upf1	94	90.978	ENSMMOG00000007537	-	99	91.073	Mola_mola
ENSJJAG00000023151	Upf1	100	96.911	ENSMODG00000003689	UPF1	100	96.911	Monodelphis_domestica
ENSJJAG00000023151	Upf1	100	90.177	ENSMALG00000018100	-	100	90.177	Monopterus_albus
ENSJJAG00000023151	Upf1	100	90.205	ENSMALG00000000144	upf1	100	90.383	Monopterus_albus
ENSJJAG00000023151	Upf1	100	99.288	MGP_CAROLIEiJ_G0031142	Upf1	100	99.288	Mus_caroli
ENSJJAG00000023151	Upf1	100	99.288	ENSMUSG00000058301	Upf1	100	99.288	Mus_musculus
ENSJJAG00000023151	Upf1	100	99.288	MGP_PahariEiJ_G0021607	Upf1	100	99.288	Mus_pahari
ENSJJAG00000023151	Upf1	100	99.288	MGP_SPRETEiJ_G0032260	Upf1	100	99.288	Mus_spretus
ENSJJAG00000023151	Upf1	100	97.168	ENSMPUG00000015516	UPF1	100	97.168	Mustela_putorius_furo
ENSJJAG00000023151	Upf1	99	97.069	ENSMLUG00000012122	UPF1	99	97.069	Myotis_lucifugus
ENSJJAG00000023151	Upf1	100	98.846	ENSNGAG00000024107	Upf1	100	98.846	Nannospalax_galili
ENSJJAG00000023151	Upf1	100	88.485	ENSNBRG00000000670	upf1	100	88.918	Neolamprologus_brichardi
ENSJJAG00000023151	Upf1	100	89.091	ENSNBRG00000022069	-	100	92.019	Neolamprologus_brichardi
ENSJJAG00000023151	Upf1	94	93.061	ENSNLEG00000006062	UPF1	100	93.061	Nomascus_leucogenys
ENSJJAG00000023151	Upf1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSJJAG00000023151	Upf1	94	90.114	ENSOPRG00000014018	UPF1	100	90.114	Ochotona_princeps
ENSJJAG00000023151	Upf1	100	97.683	ENSODEG00000012426	UPF1	100	97.683	Octodon_degus
ENSJJAG00000023151	Upf1	100	91.459	ENSONIG00000012729	-	100	91.370	Oreochromis_niloticus
ENSJJAG00000023151	Upf1	100	89.667	ENSONIG00000010452	upf1	100	90.757	Oreochromis_niloticus
ENSJJAG00000023151	Upf1	100	96.720	ENSOANG00000004568	UPF1	100	96.720	Ornithorhynchus_anatinus
ENSJJAG00000023151	Upf1	100	91.289	ENSORLG00000008453	upf1	100	91.200	Oryzias_latipes
ENSJJAG00000023151	Upf1	100	91.119	ENSORLG00020014758	upf1	100	91.030	Oryzias_latipes_hni
ENSJJAG00000023151	Upf1	100	91.119	ENSORLG00015010165	upf1	100	91.030	Oryzias_latipes_hsok
ENSJJAG00000023151	Upf1	100	91.378	ENSOMEG00000003665	upf1	100	91.289	Oryzias_melastigma
ENSJJAG00000023151	Upf1	100	97.431	ENSOGAG00000012866	UPF1	100	97.431	Otolemur_garnettii
ENSJJAG00000023151	Upf1	96	96.225	ENSOARG00000010739	UPF1	100	96.225	Ovis_aries
ENSJJAG00000023151	Upf1	95	97.944	ENSPPAG00000043884	UPF1	97	97.944	Pan_paniscus
ENSJJAG00000023151	Upf1	100	98.053	ENSPPRG00000023470	UPF1	100	98.053	Panthera_pardus
ENSJJAG00000023151	Upf1	94	95.814	ENSPTIG00000010159	UPF1	99	95.814	Panthera_tigris_altaica
ENSJJAG00000023151	Upf1	100	98.752	ENSPTRG00000010721	UPF1	100	98.752	Pan_troglodytes
ENSJJAG00000023151	Upf1	100	98.752	ENSPANG00000008847	UPF1	100	98.752	Papio_anubis
ENSJJAG00000023151	Upf1	94	91.612	ENSPKIG00000006069	upf1	99	91.517	Paramormyrops_kingsleyae
ENSJJAG00000023151	Upf1	68	96.993	ENSPSIG00000009491	UPF1	100	96.993	Pelodiscus_sinensis
ENSJJAG00000023151	Upf1	100	88.475	ENSPMGG00000017327	upf1	100	88.584	Periophthalmus_magnuspinnatus
ENSJJAG00000023151	Upf1	100	99.288	ENSPEMG00000001085	Upf1	100	99.288	Peromyscus_maniculatus_bairdii
ENSJJAG00000023151	Upf1	100	87.022	ENSPMAG00000001206	upf1	100	86.613	Petromyzon_marinus
ENSJJAG00000023151	Upf1	100	96.280	ENSPCIG00000006156	UPF1	100	96.368	Phascolarctos_cinereus
ENSJJAG00000023151	Upf1	100	90.925	ENSPLAG00000016232	-	100	91.281	Poecilia_latipinna
ENSJJAG00000023151	Upf1	100	88.713	ENSPLAG00000018155	-	100	88.624	Poecilia_latipinna
ENSJJAG00000023151	Upf1	100	91.014	ENSPMEG00000016319	-	100	91.370	Poecilia_mexicana
ENSJJAG00000023151	Upf1	100	89.175	ENSPMEG00000011443	-	100	89.086	Poecilia_mexicana
ENSJJAG00000023151	Upf1	100	90.747	ENSPREG00000011247	-	100	91.103	Poecilia_reticulata
ENSJJAG00000023151	Upf1	100	88.918	ENSPREG00000009940	upf1	100	88.918	Poecilia_reticulata
ENSJJAG00000023151	Upf1	100	93.357	ENSPPYG00000009752	UPF1	100	93.357	Pongo_abelii
ENSJJAG00000023151	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSJJAG00000023151	Upf1	100	98.753	ENSPCOG00000023813	UPF1	100	98.753	Propithecus_coquereli
ENSJJAG00000023151	Upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSJJAG00000023151	Upf1	100	89.229	ENSPNYG00000003694	upf1	100	90.317	Pundamilia_nyererei
ENSJJAG00000023151	Upf1	100	91.370	ENSPNYG00000016731	-	100	91.281	Pundamilia_nyererei
ENSJJAG00000023151	Upf1	100	92.178	ENSPNAG00000025614	upf1	100	92.622	Pygocentrus_nattereri
ENSJJAG00000023151	Upf1	100	99.199	ENSRNOG00000020134	Upf1	100	99.199	Rattus_norvegicus
ENSJJAG00000023151	Upf1	95	95.794	ENSRBIG00000013894	UPF1	98	97.403	Rhinopithecus_bieti
ENSJJAG00000023151	Upf1	95	98.131	ENSRROG00000040935	UPF1	99	98.131	Rhinopithecus_roxellana
ENSJJAG00000023151	Upf1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSJJAG00000023151	Upf1	96	97.302	ENSSBOG00000023632	UPF1	98	97.302	Saimiri_boliviensis_boliviensis
ENSJJAG00000023151	Upf1	94	98.101	ENSSHAG00000010499	UPF1	100	98.101	Sarcophilus_harrisii
ENSJJAG00000023151	Upf1	100	93.950	ENSSFOG00015021095	upf1	99	95.437	Scleropages_formosus
ENSJJAG00000023151	Upf1	100	91.467	ENSSMAG00000021018	-	100	91.467	Scophthalmus_maximus
ENSJJAG00000023151	Upf1	100	88.499	ENSSMAG00000005055	upf1	100	89.211	Scophthalmus_maximus
ENSJJAG00000023151	Upf1	100	89.395	ENSSDUG00000013320	upf1	100	90.184	Seriola_dumerili
ENSJJAG00000023151	Upf1	100	91.644	ENSSDUG00000009629	-	100	91.644	Seriola_dumerili
ENSJJAG00000023151	Upf1	100	91.644	ENSSLDG00000006878	-	100	91.644	Seriola_lalandi_dorsalis
ENSJJAG00000023151	Upf1	100	90.186	ENSSLDG00000020868	upf1	100	90.468	Seriola_lalandi_dorsalis
ENSJJAG00000023151	Upf1	100	95.904	ENSSPUG00000010538	UPF1	100	95.904	Sphenodon_punctatus
ENSJJAG00000023151	Upf1	100	88.612	ENSSPAG00000000003	upf1	100	88.652	Stegastes_partitus
ENSJJAG00000023151	Upf1	100	91.459	ENSSPAG00000011521	-	100	91.370	Stegastes_partitus
ENSJJAG00000023151	Upf1	100	98.137	ENSSSCG00000039301	UPF1	100	98.137	Sus_scrofa
ENSJJAG00000023151	Upf1	83	89.574	ENSTGUG00000001057	UPF1	100	94.527	Taeniopygia_guttata
ENSJJAG00000023151	Upf1	100	89.876	ENSTRUG00000005131	-	100	90.391	Takifugu_rubripes
ENSJJAG00000023151	Upf1	100	90.027	ENSTRUG00000000150	upf1	100	90.027	Takifugu_rubripes
ENSJJAG00000023151	Upf1	100	93.434	ENSTTRG00000011544	UPF1	100	93.434	Tursiops_truncatus
ENSJJAG00000023151	Upf1	100	97.080	ENSUAMG00000007093	UPF1	100	97.080	Ursus_americanus
ENSJJAG00000023151	Upf1	95	97.755	ENSUMAG00000006652	UPF1	99	97.846	Ursus_maritimus
ENSJJAG00000023151	Upf1	100	97.168	ENSVVUG00000007797	UPF1	100	97.168	Vulpes_vulpes
ENSJJAG00000023151	Upf1	100	81.938	ENSXETG00000013602	upf1	100	81.498	Xenopus_tropicalis
ENSJJAG00000023151	Upf1	93	92.802	ENSXCOG00000005764	-	100	93.282	Xiphophorus_couchianus
ENSJJAG00000023151	Upf1	97	88.858	ENSXCOG00000015275	-	96	88.674	Xiphophorus_couchianus
ENSJJAG00000023151	Upf1	100	90.925	ENSXMAG00000002540	-	100	91.281	Xiphophorus_maculatus
ENSJJAG00000023151	Upf1	100	89.136	ENSXMAG00000001703	-	100	88.958	Xiphophorus_maculatus