EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000023659 (Gene tree)
Gene ID: 101604808
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|HELIC2|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 39140 bases
Position: chrJH725442.1:253767-292906
Accession: 101604808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000024127	ResIII	PF04851.15	1.3e-25	1	2
ENSJJAP00000024127	ResIII	PF04851.15	1.3e-25	2	2
ENSJJAP00000024118	ResIII	PF04851.15	1.3e-25	1	2
ENSJJAP00000024118	ResIII	PF04851.15	1.3e-25	2	2
ENSJJAP00000024127	DEAD	PF00270.29	2.8e-52	1	2
ENSJJAP00000024127	DEAD	PF00270.29	2.8e-52	2	2
ENSJJAP00000024118	DEAD	PF00270.29	2.9e-52	1	2
ENSJJAP00000024118	DEAD	PF00270.29	2.9e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000030707	-	6360	-	ENSJJAP00000024127	2119 (aa)	-	-
ENSJJAT00000030698	-	6433	XM_004651741	ENSJJAP00000024118	2136 (aa)	XP_004651798	UPI0003330A09

Gene Model

Click here to download ENSJJAG00000023659's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000023659's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000023659	Snrnp200	86	42.005	ENSJJAG00000022570	Ascc3	80	44.282
ENSJJAG00000023659	Snrnp200	71	32.060	ENSJJAG00000017198	Hfm1	59	32.060

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000023659	Snrnp200	100	99.672	ENSG00000144028	SNRNP200	100	99.672	Homo_sapiens
ENSJJAG00000023659	Snrnp200	99	90.653	ENSAPOG00000010223	snrnp200	99	90.543	Acanthochromis_polyacanthus
ENSJJAG00000023659	Snrnp200	100	99.625	ENSAMEG00000008996	SNRNP200	100	99.625	Ailuropoda_melanoleuca
ENSJJAG00000023659	Snrnp200	97	90.203	ENSACIG00000001764	snrnp200	98	90.203	Amphilophus_citrinellus
ENSJJAG00000023659	Snrnp200	99	90.559	ENSAOCG00000024593	snrnp200	100	89.882	Amphiprion_ocellaris
ENSJJAG00000023659	Snrnp200	97	89.936	ENSAPEG00000012554	snrnp200	100	89.936	Amphiprion_percula
ENSJJAG00000023659	Snrnp200	99	90.512	ENSATEG00000022522	snrnp200	99	90.403	Anabas_testudineus
ENSJJAG00000023659	Snrnp200	99	97.548	ENSAPLG00000004313	SNRNP200	100	97.548	Anas_platyrhynchos
ENSJJAG00000023659	Snrnp200	99	97.322	ENSACAG00000000434	SNRNP200	100	97.322	Anolis_carolinensis
ENSJJAG00000023659	Snrnp200	100	95.103	ENSANAG00000036625	SNRNP200	100	95.522	Aotus_nancymaae
ENSJJAG00000023659	Snrnp200	99	90.371	ENSACLG00000011188	snrnp200	99	90.262	Astatotilapia_calliptera
ENSJJAG00000023659	Snrnp200	99	90.371	ENSAMXG00000005684	snrnp200	99	90.262	Astyanax_mexicanus
ENSJJAG00000023659	Snrnp200	100	99.064	ENSBTAG00000000848	SNRNP200	100	99.064	Bos_taurus
ENSJJAG00000023659	Snrnp200	100	99.625	ENSCJAG00000007514	SNRNP200	100	99.625	Callithrix_jacchus
ENSJJAG00000023659	Snrnp200	100	98.833	ENSCAFG00020019979	SNRNP200	100	99.650	Canis_lupus_dingo
ENSJJAG00000023659	Snrnp200	100	99.345	ENSCHIG00000020611	SNRNP200	100	99.345	Capra_hircus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSTSYG00000010467	SNRNP200	100	99.672	Carlito_syrichta
ENSJJAG00000023659	Snrnp200	99	99.248	ENSCAPG00000017234	SNRNP200	99	99.248	Cavia_aperea
ENSJJAG00000023659	Snrnp200	100	99.532	ENSCPOG00000006776	SNRNP200	100	99.532	Cavia_porcellus
ENSJJAG00000023659	Snrnp200	100	99.625	ENSCCAG00000033962	SNRNP200	100	99.625	Cebus_capucinus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSCATG00000015790	SNRNP200	100	99.672	Cercocebus_atys
ENSJJAG00000023659	Snrnp200	100	99.391	ENSCLAG00000004116	SNRNP200	100	99.391	Chinchilla_lanigera
ENSJJAG00000023659	Snrnp200	100	99.625	ENSCSAG00000017369	SNRNP200	100	99.625	Chlorocebus_sabaeus
ENSJJAG00000023659	Snrnp200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSJJAG00000023659	Snrnp200	100	97.616	ENSCPBG00000022571	SNRNP200	100	97.616	Chrysemys_picta_bellii
ENSJJAG00000023659	Snrnp200	99	76.460	ENSCING00000005082	-	99	76.600	Ciona_intestinalis
ENSJJAG00000023659	Snrnp200	100	94.162	ENSCANG00000033932	SNRNP200	100	99.602	Colobus_angolensis_palliatus
ENSJJAG00000023659	Snrnp200	100	99.625	ENSCGRG00001022610	Snrnp200	100	99.625	Cricetulus_griseus_chok1gshd
ENSJJAG00000023659	Snrnp200	100	99.065	ENSCGRG00000016472	Snrnp200	100	99.065	Cricetulus_griseus_crigri
ENSJJAG00000023659	Snrnp200	100	89.654	ENSCSEG00000016399	snrnp200	100	89.654	Cynoglossus_semilaevis
ENSJJAG00000023659	Snrnp200	100	85.440	ENSCVAG00000017631	snrnp200	99	85.440	Cyprinodon_variegatus
ENSJJAG00000023659	Snrnp200	100	90.169	ENSDARG00000077536	snrnp200	99	90.169	Danio_rerio
ENSJJAG00000023659	Snrnp200	100	98.034	ENSDNOG00000011227	SNRNP200	100	98.034	Dasypus_novemcinctus
ENSJJAG00000023659	Snrnp200	100	97.008	ENSDORG00000005861	Snrnp200	100	97.008	Dipodomys_ordii
ENSJJAG00000023659	Snrnp200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
ENSJJAG00000023659	Snrnp200	97	99.483	ENSETEG00000000162	SNRNP200	74	99.483	Echinops_telfairi
ENSJJAG00000023659	Snrnp200	83	81.166	ENSEBUG00000016524	snrnp200	95	81.166	Eptatretus_burgeri
ENSJJAG00000023659	Snrnp200	100	98.555	ENSEASG00005001884	SNRNP200	100	98.555	Equus_asinus_asinus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSECAG00000019675	SNRNP200	100	99.672	Equus_caballus
ENSJJAG00000023659	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSJJAG00000023659	Snrnp200	99	90.606	ENSELUG00000018948	snrnp200	99	90.496	Esox_lucius
ENSJJAG00000023659	Snrnp200	100	99.672	ENSFCAG00000010699	SNRNP200	100	99.672	Felis_catus
ENSJJAG00000023659	Snrnp200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSJJAG00000023659	Snrnp200	100	99.391	ENSFDAG00000004683	SNRNP200	100	99.391	Fukomys_damarensis
ENSJJAG00000023659	Snrnp200	100	87.594	ENSFHEG00000003786	snrnp200	99	87.594	Fundulus_heteroclitus
ENSJJAG00000023659	Snrnp200	100	89.579	ENSGMOG00000004881	snrnp200	99	89.533	Gadus_morhua
ENSJJAG00000023659	Snrnp200	100	87.828	ENSGAFG00000010807	snrnp200	99	87.828	Gambusia_affinis
ENSJJAG00000023659	Snrnp200	100	89.865	ENSGACG00000011474	snrnp200	99	89.771	Gasterosteus_aculeatus
ENSJJAG00000023659	Snrnp200	95	97.791	ENSGAGG00000016069	SNRNP200	99	97.532	Gopherus_agassizii
ENSJJAG00000023659	Snrnp200	100	99.672	ENSGGOG00000005174	SNRNP200	100	99.672	Gorilla_gorilla
ENSJJAG00000023659	Snrnp200	97	87.727	ENSHBUG00000011322	snrnp200	99	87.774	Haplochromis_burtoni
ENSJJAG00000023659	Snrnp200	100	99.485	ENSHGLG00000006654	SNRNP200	100	99.485	Heterocephalus_glaber_female
ENSJJAG00000023659	Snrnp200	100	99.485	ENSHGLG00100018594	SNRNP200	100	99.485	Heterocephalus_glaber_male
ENSJJAG00000023659	Snrnp200	100	99.625	ENSSTOG00000016351	SNRNP200	100	99.625	Ictidomys_tridecemlineatus
ENSJJAG00000023659	Snrnp200	100	87.448	ENSKMAG00000003665	snrnp200	99	87.448	Kryptolebias_marmoratus
ENSJJAG00000023659	Snrnp200	100	90.215	ENSLBEG00000021585	snrnp200	99	90.215	Labrus_bergylta
ENSJJAG00000023659	Snrnp200	82	94.492	ENSLACG00000000226	SNRNP200	99	94.492	Latimeria_chalumnae
ENSJJAG00000023659	Snrnp200	100	91.948	ENSLOCG00000015198	snrnp200	99	91.948	Lepisosteus_oculatus
ENSJJAG00000023659	Snrnp200	100	99.298	ENSLAFG00000015626	SNRNP200	100	99.298	Loxodonta_africana
ENSJJAG00000023659	Snrnp200	100	99.625	ENSMFAG00000040174	SNRNP200	100	99.625	Macaca_fascicularis
ENSJJAG00000023659	Snrnp200	100	99.625	ENSMMUG00000023261	SNRNP200	100	99.625	Macaca_mulatta
ENSJJAG00000023659	Snrnp200	100	99.579	ENSMNEG00000032398	SNRNP200	100	99.579	Macaca_nemestrina
ENSJJAG00000023659	Snrnp200	100	99.672	ENSMLEG00000019083	SNRNP200	100	99.672	Mandrillus_leucophaeus
ENSJJAG00000023659	Snrnp200	100	89.986	ENSMAMG00000007851	snrnp200	99	89.939	Mastacembelus_armatus
ENSJJAG00000023659	Snrnp200	97	87.727	ENSMZEG00005010787	snrnp200	99	87.774	Maylandia_zebra
ENSJJAG00000023659	Snrnp200	97	97.097	ENSMGAG00000001831	SNRNP200	100	97.097	Meleagris_gallopavo
ENSJJAG00000023659	Snrnp200	100	99.672	ENSMAUG00000011825	Snrnp200	100	99.672	Mesocricetus_auratus
ENSJJAG00000023659	Snrnp200	100	99.625	ENSMICG00000004710	SNRNP200	100	99.625	Microcebus_murinus
ENSJJAG00000023659	Snrnp200	100	97.097	ENSMOCG00000011814	Snrnp200	100	97.097	Microtus_ochrogaster
ENSJJAG00000023659	Snrnp200	99	88.774	ENSMMOG00000014167	snrnp200	99	88.670	Mola_mola
ENSJJAG00000023659	Snrnp200	100	98.830	ENSMODG00000008475	SNRNP200	100	98.830	Monodelphis_domestica
ENSJJAG00000023659	Snrnp200	99	90.559	ENSMALG00000001973	snrnp200	99	90.449	Monopterus_albus
ENSJJAG00000023659	Snrnp200	100	99.532	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.532	Mus_caroli
ENSJJAG00000023659	Snrnp200	100	99.579	ENSMUSG00000003660	Snrnp200	100	99.579	Mus_musculus
ENSJJAG00000023659	Snrnp200	100	99.625	MGP_PahariEiJ_G0025695	Snrnp200	100	99.625	Mus_pahari
ENSJJAG00000023659	Snrnp200	100	99.579	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.579	Mus_spretus
ENSJJAG00000023659	Snrnp200	100	99.579	ENSMPUG00000008949	SNRNP200	100	99.579	Mustela_putorius_furo
ENSJJAG00000023659	Snrnp200	100	95.225	ENSMLUG00000027511	-	100	95.225	Myotis_lucifugus
ENSJJAG00000023659	Snrnp200	100	98.925	ENSMLUG00000010493	SNRNP200	100	98.925	Myotis_lucifugus
ENSJJAG00000023659	Snrnp200	100	99.766	ENSNGAG00000021993	Snrnp200	100	99.766	Nannospalax_galili
ENSJJAG00000023659	Snrnp200	90	90.261	ENSNBRG00000017960	snrnp200	98	90.261	Neolamprologus_brichardi
ENSJJAG00000023659	Snrnp200	100	95.026	ENSNLEG00000000025	SNRNP200	100	95.137	Nomascus_leucogenys
ENSJJAG00000023659	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSJJAG00000023659	Snrnp200	100	95.740	ENSOPRG00000015464	SNRNP200	100	95.740	Ochotona_princeps
ENSJJAG00000023659	Snrnp200	100	99.391	ENSODEG00000008366	SNRNP200	100	99.391	Octodon_degus
ENSJJAG00000023659	Snrnp200	99	90.371	ENSONIG00000010714	snrnp200	99	90.262	Oreochromis_niloticus
ENSJJAG00000023659	Snrnp200	100	99.532	ENSOCUG00000009864	SNRNP200	100	99.532	Oryctolagus_cuniculus
ENSJJAG00000023659	Snrnp200	100	90.075	ENSORLG00000012286	snrnp200	100	90.075	Oryzias_latipes
ENSJJAG00000023659	Snrnp200	100	90.122	ENSORLG00020004648	snrnp200	100	90.122	Oryzias_latipes_hni
ENSJJAG00000023659	Snrnp200	100	90.075	ENSORLG00015019114	snrnp200	100	90.082	Oryzias_latipes_hsok
ENSJJAG00000023659	Snrnp200	99	90.324	ENSOMEG00000011834	snrnp200	99	90.215	Oryzias_melastigma
ENSJJAG00000023659	Snrnp200	100	99.672	ENSOGAG00000006879	SNRNP200	100	99.672	Otolemur_garnettii
ENSJJAG00000023659	Snrnp200	100	98.315	ENSOARG00000013949	SNRNP200	100	98.315	Ovis_aries
ENSJJAG00000023659	Snrnp200	100	99.672	ENSPPAG00000041559	SNRNP200	100	99.672	Pan_paniscus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSPPRG00000004435	SNRNP200	100	99.672	Panthera_pardus
ENSJJAG00000023659	Snrnp200	100	99.204	ENSPTIG00000006380	SNRNP200	100	99.204	Panthera_tigris_altaica
ENSJJAG00000023659	Snrnp200	100	99.672	ENSPTRG00000012230	SNRNP200	100	99.672	Pan_troglodytes
ENSJJAG00000023659	Snrnp200	100	99.625	ENSPANG00000006017	SNRNP200	100	99.625	Papio_anubis
ENSJJAG00000023659	Snrnp200	100	90.964	ENSPKIG00000014762	snrnp200	99	90.964	Paramormyrops_kingsleyae
ENSJJAG00000023659	Snrnp200	100	96.584	ENSPSIG00000008580	SNRNP200	100	96.584	Pelodiscus_sinensis
ENSJJAG00000023659	Snrnp200	100	98.830	ENSPCIG00000023050	SNRNP200	100	98.830	Phascolarctos_cinereus
ENSJJAG00000023659	Snrnp200	100	90.126	ENSPFOG00000015110	snrnp200	99	90.126	Poecilia_formosa
ENSJJAG00000023659	Snrnp200	97	90.055	ENSPLAG00000006711	snrnp200	99	90.055	Poecilia_latipinna
ENSJJAG00000023659	Snrnp200	97	90.000	ENSPMEG00000021166	snrnp200	99	90.000	Poecilia_mexicana
ENSJJAG00000023659	Snrnp200	100	90.215	ENSPREG00000008875	snrnp200	99	90.215	Poecilia_reticulata
ENSJJAG00000023659	Snrnp200	100	99.672	ENSPPYG00000012068	SNRNP200	100	99.672	Pongo_abelii
ENSJJAG00000023659	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSJJAG00000023659	Snrnp200	100	99.672	ENSPCOG00000024608	SNRNP200	100	99.672	Propithecus_coquereli
ENSJJAG00000023659	Snrnp200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSJJAG00000023659	Snrnp200	99	85.902	ENSPNYG00000017476	snrnp200	99	85.808	Pundamilia_nyererei
ENSJJAG00000023659	Snrnp200	100	85.908	ENSPNAG00000010998	snrnp200	99	85.908	Pygocentrus_nattereri
ENSJJAG00000023659	Snrnp200	100	99.672	ENSRNOG00000012157	Snrnp200	100	99.672	Rattus_norvegicus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSRBIG00000044690	-	100	99.672	Rhinopithecus_bieti
ENSJJAG00000023659	Snrnp200	100	99.672	ENSRROG00000037952	-	100	99.672	Rhinopithecus_roxellana
ENSJJAG00000023659	Snrnp200	100	99.625	ENSSBOG00000035471	SNRNP200	100	99.625	Saimiri_boliviensis_boliviensis
ENSJJAG00000023659	Snrnp200	97	98.742	ENSSHAG00000000758	SNRNP200	100	98.742	Sarcophilus_harrisii
ENSJJAG00000023659	Snrnp200	99	91.451	ENSSFOG00015018826	snrnp200	99	91.339	Scleropages_formosus
ENSJJAG00000023659	Snrnp200	99	90.324	ENSSMAG00000005463	snrnp200	99	90.215	Scophthalmus_maximus
ENSJJAG00000023659	Snrnp200	99	90.512	ENSSDUG00000021410	snrnp200	99	90.403	Seriola_dumerili
ENSJJAG00000023659	Snrnp200	99	90.559	ENSSLDG00000010884	snrnp200	99	90.449	Seriola_lalandi_dorsalis
ENSJJAG00000023659	Snrnp200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSJJAG00000023659	Snrnp200	100	97.285	ENSSPUG00000003726	-	100	97.285	Sphenodon_punctatus
ENSJJAG00000023659	Snrnp200	99	90.559	ENSSPAG00000001842	snrnp200	99	90.449	Stegastes_partitus
ENSJJAG00000023659	Snrnp200	100	99.485	ENSSSCG00000008127	SNRNP200	100	99.485	Sus_scrofa
ENSJJAG00000023659	Snrnp200	99	87.791	ENSTGUG00000014475	-	100	87.791	Taeniopygia_guttata
ENSJJAG00000023659	Snrnp200	99	90.183	ENSTRUG00000001307	snrnp200	99	90.075	Takifugu_rubripes
ENSJJAG00000023659	Snrnp200	100	85.724	ENSTNIG00000004320	snrnp200	100	85.724	Tetraodon_nigroviridis
ENSJJAG00000023659	Snrnp200	83	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
ENSJJAG00000023659	Snrnp200	100	99.298	ENSTTRG00000004983	SNRNP200	100	99.298	Tursiops_truncatus
ENSJJAG00000023659	Snrnp200	76	92.733	ENSUAMG00000008395	-	95	92.733	Ursus_americanus
ENSJJAG00000023659	Snrnp200	100	99.672	ENSUMAG00000012385	SNRNP200	100	99.672	Ursus_maritimus
ENSJJAG00000023659	Snrnp200	91	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSJJAG00000023659	Snrnp200	100	99.440	ENSVVUG00000026247	SNRNP200	100	99.440	Vulpes_vulpes
ENSJJAG00000023659	Snrnp200	100	94.203	ENSXETG00000001243	snrnp200	100	94.203	Xenopus_tropicalis
ENSJJAG00000023659	Snrnp200	97	90.310	ENSXMAG00000002058	snrnp200	98	90.310	Xiphophorus_maculatus