EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000000279 (Gene tree)
Gene ID: 108248491
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 13514 bases
Position: chrLWHD01000347.1:299338-312851
Accession: 108248491
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000000294	EST1	PF10374.9	4.4e-13	1	1
ENSKMAP00000000294	EST1_DNA_bind	PF10373.9	4.9e-56	1	1
ENSKMAP00000000294	PIN_4	PF13638.6	4.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000000323	-	7040	XM_017437292	ENSKMAP00000000294	1636 (aa)	XP_017292781	UPI0007F90837

Gene Model

Click here to download ENSKMAG00000000279's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000000279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000000279	smg6	76	53.858	ENSG00000070366	SMG6	100	59.273	Homo_sapiens
ENSKMAG00000000279	smg6	100	74.327	ENSAPOG00000019448	smg6	100	74.581	Acanthochromis_polyacanthus
ENSKMAG00000000279	smg6	79	52.632	ENSAMEG00000007632	SMG6	74	58.703	Ailuropoda_melanoleuca
ENSKMAG00000000279	smg6	93	71.788	ENSACIG00000012997	smg6	100	71.982	Amphilophus_citrinellus
ENSKMAG00000000279	smg6	100	75.344	ENSAOCG00000002630	smg6	100	75.598	Amphiprion_ocellaris
ENSKMAG00000000279	smg6	100	75.105	ENSAPEG00000019101	smg6	100	75.359	Amphiprion_percula
ENSKMAG00000000279	smg6	100	72.657	ENSATEG00000006483	smg6	100	72.537	Anabas_testudineus
ENSKMAG00000000279	smg6	65	48.455	ENSACAG00000011783	SMG6	88	47.446	Anolis_carolinensis
ENSKMAG00000000279	smg6	76	54.141	ENSANAG00000035760	SMG6	73	59.316	Aotus_nancymaae
ENSKMAG00000000279	smg6	100	72.067	ENSACLG00000005288	smg6	100	74.162	Astatotilapia_calliptera
ENSKMAG00000000279	smg6	71	69.561	ENSAMXG00000017326	smg6	88	68.362	Astyanax_mexicanus
ENSKMAG00000000279	smg6	76	53.864	ENSBTAG00000000267	SMG6	78	55.133	Bos_taurus
ENSKMAG00000000279	smg6	76	53.982	ENSCJAG00000001820	SMG6	73	59.226	Callithrix_jacchus
ENSKMAG00000000279	smg6	79	53.418	ENSCAFG00000019260	SMG6	88	53.206	Canis_familiaris
ENSKMAG00000000279	smg6	79	53.418	ENSCAFG00020009770	SMG6	88	53.206	Canis_lupus_dingo
ENSKMAG00000000279	smg6	76	53.699	ENSCHIG00000021998	SMG6	78	54.604	Capra_hircus
ENSKMAG00000000279	smg6	75	54.474	ENSTSYG00000003406	SMG6	100	58.909	Carlito_syrichta
ENSKMAG00000000279	smg6	69	53.881	ENSCAPG00000016197	SMG6	70	53.881	Cavia_aperea
ENSKMAG00000000279	smg6	76	53.982	ENSCPOG00000014878	SMG6	98	54.733	Cavia_porcellus
ENSKMAG00000000279	smg6	75	54.553	ENSCCAG00000035801	SMG6	73	58.866	Cebus_capucinus
ENSKMAG00000000279	smg6	76	54.040	ENSCATG00000031956	SMG6	73	59.246	Cercocebus_atys
ENSKMAG00000000279	smg6	76	53.875	ENSCLAG00000006748	SMG6	98	54.032	Chinchilla_lanigera
ENSKMAG00000000279	smg6	91	49.069	ENSCSAG00000013800	SMG6	73	59.246	Chlorocebus_sabaeus
ENSKMAG00000000279	smg6	75	54.346	ENSCPBG00000020369	SMG6	82	53.900	Chrysemys_picta_bellii
ENSKMAG00000000279	smg6	91	48.801	ENSCANG00000031764	SMG6	100	59.636	Colobus_angolensis_palliatus
ENSKMAG00000000279	smg6	75	49.648	ENSCGRG00000007782	Smg6	87	49.508	Cricetulus_griseus_crigri
ENSKMAG00000000279	smg6	100	66.667	ENSCSEG00000012757	smg6	99	67.094	Cynoglossus_semilaevis
ENSKMAG00000000279	smg6	100	70.557	ENSCVAG00000012789	smg6	100	70.796	Cyprinodon_variegatus
ENSKMAG00000000279	smg6	100	57.022	ENSDARG00000100481	smg6	100	56.825	Danio_rerio
ENSKMAG00000000279	smg6	75	54.232	ENSDNOG00000048283	SMG6	86	52.719	Dasypus_novemcinctus
ENSKMAG00000000279	smg6	79	49.629	ENSDORG00000016614	Smg6	92	56.087	Dipodomys_ordii
ENSKMAG00000000279	smg6	72	87.500	ENSETEG00000016790	SMG6	80	87.500	Echinops_telfairi
ENSKMAG00000000279	smg6	60	47.203	ENSEBUG00000005059	smg6	63	47.203	Eptatretus_burgeri
ENSKMAG00000000279	smg6	75	53.953	ENSEASG00005009318	SMG6	78	55.483	Equus_asinus_asinus
ENSKMAG00000000279	smg6	75	54.073	ENSECAG00000006519	SMG6	78	55.483	Equus_caballus
ENSKMAG00000000279	smg6	77	45.721	ENSEEUG00000003493	SMG6	74	50.133	Erinaceus_europaeus
ENSKMAG00000000279	smg6	87	62.912	ENSELUG00000005934	smg6	71	68.829	Esox_lucius
ENSKMAG00000000279	smg6	78	53.544	ENSFCAG00000028817	SMG6	74	58.902	Felis_catus
ENSKMAG00000000279	smg6	78	53.509	ENSFALG00000006538	SMG6	88	52.990	Ficedula_albicollis
ENSKMAG00000000279	smg6	79	52.897	ENSFDAG00000015106	SMG6	92	56.277	Fukomys_damarensis
ENSKMAG00000000279	smg6	100	73.165	ENSFHEG00000013282	smg6	100	72.973	Fundulus_heteroclitus
ENSKMAG00000000279	smg6	91	48.243	ENSGALG00000003108	SMG6	96	47.987	Gallus_gallus
ENSKMAG00000000279	smg6	100	74.596	ENSGAFG00000000379	smg6	100	74.460	Gambusia_affinis
ENSKMAG00000000279	smg6	82	88.462	ENSGACG00000020521	smg6	97	88.462	Gasterosteus_aculeatus
ENSKMAG00000000279	smg6	75	53.882	ENSGAGG00000025617	SMG6	84	53.569	Gopherus_agassizii
ENSKMAG00000000279	smg6	91	48.592	ENSGGOG00000017156	SMG6	73	59.066	Gorilla_gorilla
ENSKMAG00000000279	smg6	100	73.245	ENSHBUG00000021311	smg6	100	73.185	Haplochromis_burtoni
ENSKMAG00000000279	smg6	75	54.667	ENSHGLG00000012882	SMG6	98	54.878	Heterocephalus_glaber_female
ENSKMAG00000000279	smg6	75	54.667	ENSHGLG00100017815	SMG6	98	54.878	Heterocephalus_glaber_male
ENSKMAG00000000279	smg6	65	69.302	ENSHCOG00000008761	smg6	83	69.116	Hippocampus_comes
ENSKMAG00000000279	smg6	100	53.388	ENSIPUG00000012493	smg6	100	53.580	Ictalurus_punctatus
ENSKMAG00000000279	smg6	75	54.375	ENSSTOG00000028127	SMG6	92	56.710	Ictidomys_tridecemlineatus
ENSKMAG00000000279	smg6	58	50.503	ENSJJAG00000015367	Smg6	79	49.228	Jaculus_jaculus
ENSKMAG00000000279	smg6	100	70.275	ENSLBEG00000002184	smg6	100	70.036	Labrus_bergylta
ENSKMAG00000000279	smg6	67	65.085	ENSLOCG00000006448	smg6	100	54.581	Lepisosteus_oculatus
ENSKMAG00000000279	smg6	79	52.448	ENSLAFG00000001261	SMG6	88	52.030	Loxodonta_africana
ENSKMAG00000000279	smg6	91	49.004	ENSMFAG00000003394	SMG6	73	59.425	Macaca_fascicularis
ENSKMAG00000000279	smg6	91	48.940	ENSMMUG00000023161	SMG6	73	59.156	Macaca_mulatta
ENSKMAG00000000279	smg6	91	46.649	ENSMNEG00000044592	SMG6	72	56.859	Macaca_nemestrina
ENSKMAG00000000279	smg6	86	60.424	ENSMLEG00000029353	SMG6	73	60.730	Mandrillus_leucophaeus
ENSKMAG00000000279	smg6	100	72.754	ENSMAMG00000020119	smg6	100	75.048	Mastacembelus_armatus
ENSKMAG00000000279	smg6	100	71.948	ENSMZEG00005024736	smg6	100	72.820	Maylandia_zebra
ENSKMAG00000000279	smg6	67	44.703	ENSMGAG00000005401	-	97	44.540	Meleagris_gallopavo
ENSKMAG00000000279	smg6	78	53.723	ENSMICG00000012913	SMG6	74	58.897	Microcebus_murinus
ENSKMAG00000000279	smg6	100	66.407	ENSMMOG00000010883	smg6	100	66.527	Mola_mola
ENSKMAG00000000279	smg6	77	53.899	ENSMODG00000010622	SMG6	87	53.483	Monodelphis_domestica
ENSKMAG00000000279	smg6	100	70.644	ENSMALG00000001106	smg6	100	70.968	Monopterus_albus
ENSKMAG00000000279	smg6	85	54.196	MGP_CAROLIEiJ_G0016729	Smg6	98	63.934	Mus_caroli
ENSKMAG00000000279	smg6	85	53.822	ENSMUSG00000038290	Smg6	97	64.903	Mus_musculus
ENSKMAG00000000279	smg6	86	53.888	MGP_PahariEiJ_G0017866	Smg6	90	68.085	Mus_pahari
ENSKMAG00000000279	smg6	85	53.900	MGP_SPRETEiJ_G0017572	Smg6	97	64.624	Mus_spretus
ENSKMAG00000000279	smg6	78	52.726	ENSMPUG00000013046	SMG6	78	55.178	Mustela_putorius_furo
ENSKMAG00000000279	smg6	76	53.988	ENSMLUG00000005739	SMG6	73	59.156	Myotis_lucifugus
ENSKMAG00000000279	smg6	75	53.876	ENSNGAG00000007287	Smg6	98	52.823	Nannospalax_galili
ENSKMAG00000000279	smg6	97	69.871	ENSNBRG00000009511	smg6	99	73.531	Neolamprologus_brichardi
ENSKMAG00000000279	smg6	76	53.969	ENSNLEG00000017171	SMG6	100	59.273	Nomascus_leucogenys
ENSKMAG00000000279	smg6	79	53.187	ENSMEUG00000015804	SMG6	91	52.067	Notamacropus_eugenii
ENSKMAG00000000279	smg6	51	61.856	ENSOPRG00000000579	SMG6	81	60.287	Ochotona_princeps
ENSKMAG00000000279	smg6	76	48.394	ENSODEG00000008038	SMG6	81	53.757	Octodon_degus
ENSKMAG00000000279	smg6	100	72.292	ENSONIG00000005594	smg6	99	77.399	Oreochromis_niloticus
ENSKMAG00000000279	smg6	100	67.347	ENSORLG00000003317	smg6	100	67.767	Oryzias_latipes
ENSKMAG00000000279	smg6	100	67.651	ENSORLG00020015343	smg6	100	67.849	Oryzias_latipes_hni
ENSKMAG00000000279	smg6	100	67.568	ENSORLG00015020454	smg6	100	67.988	Oryzias_latipes_hsok
ENSKMAG00000000279	smg6	100	67.855	ENSOMEG00000010838	smg6	100	69.069	Oryzias_melastigma
ENSKMAG00000000279	smg6	76	54.343	ENSOGAG00000004483	SMG6	74	58.954	Otolemur_garnettii
ENSKMAG00000000279	smg6	78	53.123	ENSOARG00000015076	SMG6	86	52.817	Ovis_aries
ENSKMAG00000000279	smg6	76	53.787	ENSPPAG00000043296	SMG6	73	58.977	Pan_paniscus
ENSKMAG00000000279	smg6	78	53.747	ENSPPRG00000014581	SMG6	74	58.902	Panthera_pardus
ENSKMAG00000000279	smg6	78	53.747	ENSPTIG00000008925	SMG6	100	59.307	Panthera_tigris_altaica
ENSKMAG00000000279	smg6	75	54.617	ENSPTRG00000008544	SMG6	100	59.273	Pan_troglodytes
ENSKMAG00000000279	smg6	91	48.876	ENSPANG00000024588	SMG6	73	59.156	Papio_anubis
ENSKMAG00000000279	smg6	83	47.264	ENSPSIG00000006660	SMG6	86	49.879	Pelodiscus_sinensis
ENSKMAG00000000279	smg6	94	78.659	ENSPMGG00000000844	smg6	99	78.659	Periophthalmus_magnuspinnatus
ENSKMAG00000000279	smg6	75	54.503	ENSPEMG00000020707	Smg6	100	54.472	Peromyscus_maniculatus_bairdii
ENSKMAG00000000279	smg6	100	75.136	ENSPFOG00000012035	smg6	100	79.616	Poecilia_formosa
ENSKMAG00000000279	smg6	100	75.196	ENSPLAG00000017660	smg6	100	75.000	Poecilia_latipinna
ENSKMAG00000000279	smg6	100	75.317	ENSPMEG00000000258	smg6	100	75.121	Poecilia_mexicana
ENSKMAG00000000279	smg6	100	75.090	ENSPREG00000010066	smg6	100	74.894	Poecilia_reticulata
ENSKMAG00000000279	smg6	76	49.771	ENSPPYG00000007790	SMG6	73	54.163	Pongo_abelii
ENSKMAG00000000279	smg6	73	60.455	ENSPCAG00000000552	SMG6	85	51.409	Procavia_capensis
ENSKMAG00000000279	smg6	78	53.561	ENSPCOG00000020925	SMG6	74	58.584	Propithecus_coquereli
ENSKMAG00000000279	smg6	71	62.835	ENSPVAG00000002159	SMG6	74	62.850	Pteropus_vampyrus
ENSKMAG00000000279	smg6	91	72.303	ENSPNYG00000024151	smg6	99	73.333	Pundamilia_nyererei
ENSKMAG00000000279	smg6	90	59.347	ENSPNAG00000015480	smg6	81	58.358	Pygocentrus_nattereri
ENSKMAG00000000279	smg6	81	52.145	ENSRNOG00000003041	Smg6	97	64.402	Rattus_norvegicus
ENSKMAG00000000279	smg6	91	48.779	ENSRBIG00000024746	SMG6	73	59.246	Rhinopithecus_bieti
ENSKMAG00000000279	smg6	91	48.995	ENSRROG00000030423	SMG6	100	59.636	Rhinopithecus_roxellana
ENSKMAG00000000279	smg6	76	53.752	ENSSBOG00000022518	SMG6	72	57.066	Saimiri_boliviensis_boliviensis
ENSKMAG00000000279	smg6	77	53.992	ENSSHAG00000010045	SMG6	85	53.515	Sarcophilus_harrisii
ENSKMAG00000000279	smg6	91	54.505	ENSSFOG00015005436	smg6	92	55.641	Scleropages_formosus
ENSKMAG00000000279	smg6	100	71.855	ENSSMAG00000019777	smg6	100	71.855	Scophthalmus_maximus
ENSKMAG00000000279	smg6	100	74.672	ENSSDUG00000016412	smg6	100	74.732	Seriola_dumerili
ENSKMAG00000000279	smg6	91	74.541	ENSSLDG00000020747	smg6	98	74.606	Seriola_lalandi_dorsalis
ENSKMAG00000000279	smg6	79	52.174	ENSSPUG00000007152	SMG6	89	51.836	Sphenodon_punctatus
ENSKMAG00000000279	smg6	100	75.404	ENSSPAG00000015633	smg6	100	75.404	Stegastes_partitus
ENSKMAG00000000279	smg6	75	54.859	ENSSSCG00000017826	SMG6	74	58.777	Sus_scrofa
ENSKMAG00000000279	smg6	78	52.910	ENSTGUG00000005836	SMG6	99	52.427	Taeniopygia_guttata
ENSKMAG00000000279	smg6	94	66.688	ENSTRUG00000000358	smg6	98	66.555	Takifugu_rubripes
ENSKMAG00000000279	smg6	96	72.566	ENSTNIG00000016164	smg6	100	73.068	Tetraodon_nigroviridis
ENSKMAG00000000279	smg6	76	51.306	ENSTBEG00000011424	SMG6	85	51.298	Tupaia_belangeri
ENSKMAG00000000279	smg6	67	57.265	ENSTTRG00000001175	SMG6	65	57.305	Tursiops_truncatus
ENSKMAG00000000279	smg6	75	54.482	ENSUAMG00000025152	SMG6	80	55.178	Ursus_americanus
ENSKMAG00000000279	smg6	78	53.127	ENSUMAG00000009306	SMG6	80	55.393	Ursus_maritimus
ENSKMAG00000000279	smg6	60	88.889	ENSVPAG00000000225	SMG6	61	88.889	Vicugna_pacos
ENSKMAG00000000279	smg6	79	54.297	ENSVVUG00000021727	SMG6	89	54.072	Vulpes_vulpes
ENSKMAG00000000279	smg6	66	54.570	ENSXETG00000023799	SMG6	74	54.397	Xenopus_tropicalis
ENSKMAG00000000279	smg6	98	72.644	ENSXCOG00000009867	smg6	99	72.627	Xiphophorus_couchianus
ENSKMAG00000000279	smg6	100	74.820	ENSXMAG00000010321	smg6	100	74.385	Xiphophorus_maculatus