EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000000605 (Gene tree)
Gene ID
108234201
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Plus strand
Length
7537 bases
Position
chrLWHD01000025.1:844298-851834
Accession
108234201
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000000818PABPPF00658.186.1e-3211
ENSKMAP00000000818RRM_5PF13893.63.7e-0812
ENSKMAP00000000818RRM_5PF13893.63.7e-0822
ENSKMAP00000000818RRM_1PF00076.221.2e-9214
ENSKMAP00000000818RRM_1PF00076.221.2e-9224
ENSKMAP00000000818RRM_1PF00076.221.2e-9234
ENSKMAP00000000818RRM_1PF00076.221.2e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000000849-4313XM_025005261ENSKMAP00000000818635 (aa)XP_024861029UPI0007F8B1ED
Gene Model
Click here to download ENSKMAG00000000605's gene model file
Pathways
Pathway IDPathway NameSource
kmr03013RNA transportKEGG
kmr03015mRNA surveillance pathwayKEGG
kmr03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000000605's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000000605pabpc1a5536.047ENSKMAG00000014795-5936.905
ENSKMAG00000000605pabpc1a10088.365ENSKMAG00000008049pabpc1b10088.522
ENSKMAG00000000605pabpc1a9975.906ENSKMAG00000013597pabpc49976.378
ENSKMAG00000000605pabpc1a5930.065ENSKMAG00000017412elavl37230.065
ENSKMAG00000000605pabpc1a5937.349ENSKMAG00000006299ELAVL28537.349
ENSKMAG00000000605pabpc1a5931.694ENSKMAG00000008111ncl5032.759
ENSKMAG00000000605pabpc1a5737.333ENSKMAG00000014807rbm197837.333
ENSKMAG00000000605pabpc1a5734.722ENSKMAG00000014566-6734.722
ENSKMAG00000000605pabpc1a5936.145ENSKMAG00000022289elavl48136.145
ENSKMAG00000000605pabpc1a5338.554ENSKMAG00000017307si:dkey-205h23.25838.554
ENSKMAG00000000605pabpc1a9869.889ENSKMAG00000016847pabpc1l10069.889
ENSKMAG00000000605pabpc1a5730.464ENSKMAG00000006259-9630.464
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000000605pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSKMAG00000000605pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSKMAG00000000605pabpc1a10098.268ENSAPOG00000015105pabpc1a10098.268Acanthochromis_polyacanthus
ENSKMAG00000000605pabpc1a10090.596ENSAPOG00000017776pabpc1b10090.752Acanthochromis_polyacanthus
ENSKMAG00000000605pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSKMAG00000000605pabpc1a10097.953ENSACIG00000004685pabpc1a10097.953Amphilophus_citrinellus
ENSKMAG00000000605pabpc1a10085.803ENSACIG00000018366pabpc1b10085.959Amphilophus_citrinellus
ENSKMAG00000000605pabpc1a10098.583ENSAOCG00000011656pabpc1a10098.583Amphiprion_ocellaris
ENSKMAG00000000605pabpc1a10090.439ENSAOCG00000019839pabpc1b10090.439Amphiprion_ocellaris
ENSKMAG00000000605pabpc1a10098.583ENSAPEG00000006963pabpc1a10098.583Amphiprion_percula
ENSKMAG00000000605pabpc1a10090.439ENSAPEG00000010435pabpc1b10090.439Amphiprion_percula
ENSKMAG00000000605pabpc1a10098.110ENSATEG00000024852pabpc1a10098.110Anabas_testudineus
ENSKMAG00000000605pabpc1a10089.045ENSATEG00000012917pabpc1b10089.671Anabas_testudineus
ENSKMAG00000000605pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSKMAG00000000605pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSKMAG00000000605pabpc1a10088.871ENSACLG00000014335pabpc1b10089.185Astatotilapia_calliptera
ENSKMAG00000000605pabpc1a10097.638ENSACLG00000009399pabpc1a10097.638Astatotilapia_calliptera
ENSKMAG00000000605pabpc1a10090.439ENSAMXG00000008599pabpc1b10090.439Astyanax_mexicanus
ENSKMAG00000000605pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSKMAG00000000605pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSKMAG00000000605pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSKMAG00000000605pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSKMAG00000000605pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSKMAG00000000605pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSKMAG00000000605pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSKMAG00000000605pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSKMAG00000000605pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSKMAG00000000605pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSKMAG00000000605pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSKMAG00000000605pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSKMAG00000000605pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSKMAG00000000605pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSKMAG00000000605pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSKMAG00000000605pabpc1a9997.627ENSCSEG00000013324pabpc1a10097.627Cynoglossus_semilaevis
ENSKMAG00000000605pabpc1a10088.245ENSCSEG00000015241-10088.245Cynoglossus_semilaevis
ENSKMAG00000000605pabpc1a10098.268ENSCVAG00000021872pabpc1a10098.268Cyprinodon_variegatus
ENSKMAG00000000605pabpc1a10087.950ENSCVAG00000005489pabpc1b10088.106Cyprinodon_variegatus
ENSKMAG00000000605pabpc1a10091.693ENSDARG00000017219pabpc1a10091.693Danio_rerio
ENSKMAG00000000605pabpc1a10089.028ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSKMAG00000000605pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSKMAG00000000605pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSKMAG00000000605pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSKMAG00000000605pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSKMAG00000000605pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSKMAG00000000605pabpc1a10088.750ENSELUG00000015062-10088.750Esox_lucius
ENSKMAG00000000605pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSKMAG00000000605pabpc1a9994.182ENSELUG00000003614pabpc1a10094.182Esox_lucius
ENSKMAG00000000605pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSKMAG00000000605pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSKMAG00000000605pabpc1a10089.185ENSFHEG00000008186pabpc1b10089.342Fundulus_heteroclitus
ENSKMAG00000000605pabpc1a10098.110ENSFHEG00000018979pabpc1a10098.110Fundulus_heteroclitus
ENSKMAG00000000605pabpc1a10080.930ENSGMOG00000002448-10080.930Gadus_morhua
ENSKMAG00000000605pabpc1a9993.663ENSGMOG00000013448pabpc1a9994.281Gadus_morhua
ENSKMAG00000000605pabpc1a10090.125ENSGAFG00000010193pabpc1b10090.282Gambusia_affinis
ENSKMAG00000000605pabpc1a10097.480ENSGAFG00000019750pabpc1a10097.480Gambusia_affinis
ENSKMAG00000000605pabpc1a10097.953ENSGACG00000003572pabpc1a10097.953Gasterosteus_aculeatus
ENSKMAG00000000605pabpc1a10087.907ENSGACG00000003771pabpc1b10088.217Gasterosteus_aculeatus
ENSKMAG00000000605pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSKMAG00000000605pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSKMAG00000000605pabpc1a10097.638ENSHBUG00000020487pabpc1a10097.638Haplochromis_burtoni
ENSKMAG00000000605pabpc1a10088.871ENSHBUG00000002075pabpc1b10089.185Haplochromis_burtoni
ENSKMAG00000000605pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSKMAG00000000605pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSKMAG00000000605pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSKMAG00000000605pabpc1a9869.600ENSHCOG00000003175pabpc1b9969.600Hippocampus_comes
ENSKMAG00000000605pabpc1a10097.638ENSHCOG00000013502pabpc1a10097.638Hippocampus_comes
ENSKMAG00000000605pabpc1a10090.551ENSIPUG00000008848pabpc1a10090.551Ictalurus_punctatus
ENSKMAG00000000605pabpc1a7555.509ENSIPUG00000021244-6555.509Ictalurus_punctatus
ENSKMAG00000000605pabpc1a7656.716ENSIPUG00000018724-7856.716Ictalurus_punctatus
ENSKMAG00000000605pabpc1a10084.615ENSIPUG00000010791-10084.615Ictalurus_punctatus
ENSKMAG00000000605pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSKMAG00000000605pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSKMAG00000000605pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSKMAG00000000605pabpc1a10097.165ENSLBEG00000024002-10097.165Labrus_bergylta
ENSKMAG00000000605pabpc1a10089.342ENSLBEG00000026845pabpc1b10089.498Labrus_bergylta
ENSKMAG00000000605pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSKMAG00000000605pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSKMAG00000000605pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSKMAG00000000605pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSKMAG00000000605pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSKMAG00000000605pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSKMAG00000000605pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSKMAG00000000605pabpc1a10098.110ENSMAMG00000004502-10098.110Mastacembelus_armatus
ENSKMAG00000000605pabpc1a10089.498ENSMAMG00000014610pabpc1b10089.812Mastacembelus_armatus
ENSKMAG00000000605pabpc1a10097.638ENSMZEG00005025416pabpc1a10097.638Maylandia_zebra
ENSKMAG00000000605pabpc1a10088.871ENSMZEG00005026745pabpc1b10089.185Maylandia_zebra
ENSKMAG00000000605pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSKMAG00000000605pabpc1a10095.781ENSMMOG00000018044pabpc1a10095.781Mola_mola
ENSKMAG00000000605pabpc1a10084.458ENSMMOG00000018009pabpc1b10084.458Mola_mola
ENSKMAG00000000605pabpc1a9966.614ENSMODG00000015024-9966.614Monodelphis_domestica
ENSKMAG00000000605pabpc1a9873.482ENSMODG00000013156-9873.642Monodelphis_domestica
ENSKMAG00000000605pabpc1a10084.929ENSMALG00000006066pabpc1b10085.086Monopterus_albus
ENSKMAG00000000605pabpc1a10097.638ENSMALG00000013020-10097.638Monopterus_albus
ENSKMAG00000000605pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSKMAG00000000605pabpc1a10097.480ENSNBRG00000003068-10097.480Neolamprologus_brichardi
ENSKMAG00000000605pabpc1a10089.028ENSNBRG00000013737pabpc1b10089.342Neolamprologus_brichardi
ENSKMAG00000000605pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSKMAG00000000605pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSKMAG00000000605pabpc1a10096.850ENSONIG00000006871-10096.850Oreochromis_niloticus
ENSKMAG00000000605pabpc1a10088.871ENSONIG00000002717pabpc1b10089.185Oreochromis_niloticus
ENSKMAG00000000605pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSKMAG00000000605pabpc1a9999.286ENSORLG00000002691pabpc1a10099.286Oryzias_latipes
ENSKMAG00000000605pabpc1a10084.772ENSORLG00000003008-10084.772Oryzias_latipes
ENSKMAG00000000605pabpc1a10084.772ENSORLG00020022259-10084.772Oryzias_latipes_hni
ENSKMAG00000000605pabpc1a10097.480ENSORLG00020022398pabpc1a10097.480Oryzias_latipes_hni
ENSKMAG00000000605pabpc1a10085.086ENSORLG00015010932-10085.086Oryzias_latipes_hsok
ENSKMAG00000000605pabpc1a10097.323ENSORLG00015013633pabpc110097.323Oryzias_latipes_hsok
ENSKMAG00000000605pabpc1a9481.693ENSOMEG00000013627pabpc1b10081.693Oryzias_melastigma
ENSKMAG00000000605pabpc1a10098.110ENSOMEG00000020219pabpc1a10098.110Oryzias_melastigma
ENSKMAG00000000605pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSKMAG00000000605pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSKMAG00000000605pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSKMAG00000000605pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSKMAG00000000605pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSKMAG00000000605pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSKMAG00000000605pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSKMAG00000000605pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSKMAG00000000605pabpc1a10090.282ENSPKIG00000005676pabpc1b10090.282Paramormyrops_kingsleyae
ENSKMAG00000000605pabpc1a7097.978ENSPMGG00000022487pabpc1a9297.978Periophthalmus_magnuspinnatus
ENSKMAG00000000605pabpc1a7091.928ENSPMGG00000023134-9791.928Periophthalmus_magnuspinnatus
ENSKMAG00000000605pabpc1a9972.425ENSPCIG00000016995-5572.425Phascolarctos_cinereus
ENSKMAG00000000605pabpc1a10089.655ENSPFOG00000005917pabpc1b10089.812Poecilia_formosa
ENSKMAG00000000605pabpc1a10096.754ENSPFOG00000010815pabpc1a10096.754Poecilia_formosa
ENSKMAG00000000605pabpc1a10089.969ENSPLAG00000001388pabpc1b10090.125Poecilia_latipinna
ENSKMAG00000000605pabpc1a10098.740ENSPLAG00000004114pabpc1a10098.740Poecilia_latipinna
ENSKMAG00000000605pabpc1a10098.740ENSPMEG00000001334pabpc1a10098.740Poecilia_mexicana
ENSKMAG00000000605pabpc1a10089.655ENSPMEG00000014399pabpc1b10089.812Poecilia_mexicana
ENSKMAG00000000605pabpc1a10095.476ENSPREG00000019595pabpc1a10095.872Poecilia_reticulata
ENSKMAG00000000605pabpc1a10089.969ENSPREG00000010911pabpc1b10090.125Poecilia_reticulata
ENSKMAG00000000605pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSKMAG00000000605pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSKMAG00000000605pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSKMAG00000000605pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSKMAG00000000605pabpc1a10097.638ENSPNYG00000005192pabpc1a10097.638Pundamilia_nyererei
ENSKMAG00000000605pabpc1a10088.871ENSPNYG00000012578pabpc1b10089.185Pundamilia_nyererei
ENSKMAG00000000605pabpc1a10089.812ENSPNAG00000024626pabpc1b10089.812Pygocentrus_nattereri
ENSKMAG00000000605pabpc1a10091.366ENSPNAG00000028408pabpc1a10091.366Pygocentrus_nattereri
ENSKMAG00000000605pabpc1a9989.906ENSRBIG00000028738-9589.906Rhinopithecus_bieti
ENSKMAG00000000605pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSKMAG00000000605pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSKMAG00000000605pabpc1a9864.103ENSSHAG00000000511-10064.103Sarcophilus_harrisii
ENSKMAG00000000605pabpc1a10089.953ENSSFOG00015002752-10090.267Scleropages_formosus
ENSKMAG00000000605pabpc1a10090.110ENSSFOG00015006662pabpc1a10090.267Scleropages_formosus
ENSKMAG00000000605pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSKMAG00000000605pabpc1a10088.715ENSSMAG00000006869pabpc1b10088.871Scophthalmus_maximus
ENSKMAG00000000605pabpc1a10097.638ENSSMAG00000010803pabpc1a10097.638Scophthalmus_maximus
ENSKMAG00000000605pabpc1a10097.795ENSSDUG00000006675pabpc1a10097.795Seriola_dumerili
ENSKMAG00000000605pabpc1a10088.088ENSSDUG00000011965pabpc1b10088.401Seriola_dumerili
ENSKMAG00000000605pabpc1a10089.736ENSSLDG00000014156pabpc1b10090.047Seriola_lalandi_dorsalis
ENSKMAG00000000605pabpc1a10097.795ENSSLDG00000011661pabpc1a10097.795Seriola_lalandi_dorsalis
ENSKMAG00000000605pabpc1a10098.425ENSSPAG00000014453-10098.425Stegastes_partitus
ENSKMAG00000000605pabpc1a10090.282ENSSPAG00000019265pabpc1b10090.596Stegastes_partitus
ENSKMAG00000000605pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSKMAG00000000605pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSKMAG00000000605pabpc1a10085.915ENSTRUG00000003767-10086.385Takifugu_rubripes
ENSKMAG00000000605pabpc1a10094.969ENSTRUG00000011577-10095.755Takifugu_rubripes
ENSKMAG00000000605pabpc1a10092.248ENSTNIG00000013307pabpc1a10093.023Tetraodon_nigroviridis
ENSKMAG00000000605pabpc1a10086.449ENSTNIG00000009153pabpc1b10086.449Tetraodon_nigroviridis
ENSKMAG00000000605pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSKMAG00000000605pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSKMAG00000000605pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSKMAG00000000605pabpc1a9754.839ENSUMAG00000023926-8970.442Ursus_maritimus
ENSKMAG00000000605pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSKMAG00000000605pabpc1a9745.921ENSXETG00000015439-9745.853Xenopus_tropicalis
ENSKMAG00000000605pabpc1a10092.126ENSXCOG00000017066pabpc1a10092.126Xiphophorus_couchianus
ENSKMAG00000000605pabpc1a10085.781ENSXCOG00000019901pabpc1b10085.781Xiphophorus_couchianus
ENSKMAG00000000605pabpc1a10098.110ENSXMAG00000002555pabpc1a10098.110Xiphophorus_maculatus
ENSKMAG00000000605pabpc1a10090.125ENSXMAG00000003753pabpc1b10090.282Xiphophorus_maculatus

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