EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000001071 (Gene tree)
Gene ID: 108249647
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 25336 bases
Position: chrLWHD01000474.1:45895-71230
Accession: 108249647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000001444	Upf2	PF04050.14	2.3e-33	1	1
ENSKMAP00000001444	MIF4G	PF02854.19	1.3e-81	1	3
ENSKMAP00000001444	MIF4G	PF02854.19	1.3e-81	2	3
ENSKMAP00000001444	MIF4G	PF02854.19	1.3e-81	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000001484	UPF2-201	6667	XM_017439155	ENSKMAP00000001444	1268 (aa)	XP_017294644	-

Gene Model

Click here to download ENSKMAG00000001071's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001071's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001071	UPF2	100	82.275	ENSG00000151461	UPF2	99	82.003	Homo_sapiens
ENSKMAG00000001071	UPF2	99	88.784	ENSAPOG00000015837	UPF2	99	88.389	Acanthochromis_polyacanthus
ENSKMAG00000001071	UPF2	99	82.964	ENSAMEG00000004586	UPF2	92	84.851	Ailuropoda_melanoleuca
ENSKMAG00000001071	UPF2	99	94.550	ENSACIG00000018078	UPF2	99	94.550	Amphilophus_citrinellus
ENSKMAG00000001071	UPF2	100	94.322	ENSAOCG00000016766	UPF2	99	94.401	Amphiprion_ocellaris
ENSKMAG00000001071	UPF2	100	94.401	ENSAPEG00000019084	UPF2	99	94.479	Amphiprion_percula
ENSKMAG00000001071	UPF2	100	94.479	ENSATEG00000021677	UPF2	99	94.479	Anabas_testudineus
ENSKMAG00000001071	UPF2	100	78.683	ENSAPLG00000010287	UPF2	90	82.889	Anas_platyrhynchos
ENSKMAG00000001071	UPF2	100	82.339	ENSACAG00000009259	UPF2	99	82.537	Anolis_carolinensis
ENSKMAG00000001071	UPF2	92	79.127	ENSANAG00000028451	UPF2	93	79.181	Aotus_nancymaae
ENSKMAG00000001071	UPF2	100	94.243	ENSACLG00000012696	UPF2	99	94.243	Astatotilapia_calliptera
ENSKMAG00000001071	UPF2	99	88.513	ENSAMXG00000013700	UPF2	98	88.513	Astyanax_mexicanus
ENSKMAG00000001071	UPF2	92	84.569	ENSBTAG00000000288	UPF2	92	84.766	Bos_taurus
ENSKMAG00000001071	UPF2	100	81.868	ENSCJAG00000020685	UPF2	99	81.363	Callithrix_jacchus
ENSKMAG00000001071	UPF2	99	82.964	ENSCAFG00000004839	UPF2	92	84.936	Canis_familiaris
ENSKMAG00000001071	UPF2	94	86.364	ENSCAFG00020005882	UPF2	98	81.415	Canis_lupus_dingo
ENSKMAG00000001071	UPF2	92	84.569	ENSCHIG00000020359	UPF2	92	84.766	Capra_hircus
ENSKMAG00000001071	UPF2	100	81.947	ENSTSYG00000000935	UPF2	92	84.596	Carlito_syrichta
ENSKMAG00000001071	UPF2	92	74.466	ENSCAPG00000016658	UPF2	95	74.084	Cavia_aperea
ENSKMAG00000001071	UPF2	99	80.143	ENSCPOG00000008809	UPF2	92	82.779	Cavia_porcellus
ENSKMAG00000001071	UPF2	96	82.822	ENSCCAG00000035991	UPF2	99	82.927	Cebus_capucinus
ENSKMAG00000001071	UPF2	100	82.353	ENSCATG00000032679	UPF2	99	82.081	Cercocebus_atys
ENSKMAG00000001071	UPF2	99	82.078	ENSCLAG00000011434	UPF2	99	82.041	Chinchilla_lanigera
ENSKMAG00000001071	UPF2	100	82.353	ENSCSAG00000013372	UPF2	99	82.081	Chlorocebus_sabaeus
ENSKMAG00000001071	UPF2	79	88.692	ENSCHOG00000000422	UPF2	81	88.692	Choloepus_hoffmanni
ENSKMAG00000001071	UPF2	93	84.962	ENSCPBG00000027823	UPF2	93	85.081	Chrysemys_picta_bellii
ENSKMAG00000001071	UPF2	79	49.363	ENSCSAVG00000007772	-	99	48.272	Ciona_savignyi
ENSKMAG00000001071	UPF2	99	77.163	ENSCANG00000040396	UPF2	99	77.212	Colobus_angolensis_palliatus
ENSKMAG00000001071	UPF2	99	82.567	ENSCGRG00001019347	Upf2	99	82.609	Cricetulus_griseus_chok1gshd
ENSKMAG00000001071	UPF2	99	82.567	ENSCGRG00000017993	Upf2	99	82.609	Cricetulus_griseus_crigri
ENSKMAG00000001071	UPF2	100	85.185	ENSCSEG00000003520	UPF2	99	84.791	Cynoglossus_semilaevis
ENSKMAG00000001071	UPF2	100	93.533	ENSCVAG00000006167	UPF2	100	93.297	Cyprinodon_variegatus
ENSKMAG00000001071	UPF2	99	82.805	ENSDNOG00000018160	UPF2	92	84.766	Dasypus_novemcinctus
ENSKMAG00000001071	UPF2	99	82.488	ENSDORG00000002478	Upf2	99	82.530	Dipodomys_ordii
ENSKMAG00000001071	UPF2	72	92.701	ENSETEG00000011583	-	62	92.424	Echinops_telfairi
ENSKMAG00000001071	UPF2	65	72.185	ENSEBUG00000012448	-	93	69.012	Eptatretus_burgeri
ENSKMAG00000001071	UPF2	99	82.078	ENSEASG00005019274	UPF2	91	86.551	Equus_asinus_asinus
ENSKMAG00000001071	UPF2	99	82.078	ENSECAG00000017022	UPF2	92	84.851	Equus_caballus
ENSKMAG00000001071	UPF2	77	74.375	ENSEEUG00000007819	UPF2	74	74.798	Erinaceus_europaeus
ENSKMAG00000001071	UPF2	99	86.871	ENSELUG00000012014	UPF2	99	88.915	Esox_lucius
ENSKMAG00000001071	UPF2	92	85.792	ENSFCAG00000005785	UPF2	92	84.851	Felis_catus
ENSKMAG00000001071	UPF2	91	86.033	ENSFALG00000001889	UPF2	89	86.116	Ficedula_albicollis
ENSKMAG00000001071	UPF2	100	80.643	ENSFDAG00000014348	UPF2	92	84.255	Fukomys_damarensis
ENSKMAG00000001071	UPF2	100	93.612	ENSFHEG00000009826	UPF2	100	93.533	Fundulus_heteroclitus
ENSKMAG00000001071	UPF2	91	88.103	ENSGMOG00000005557	UPF2	99	85.714	Gadus_morhua
ENSKMAG00000001071	UPF2	100	83.373	ENSGALG00000033772	UPF2	99	83.333	Gallus_gallus
ENSKMAG00000001071	UPF2	100	93.297	ENSGAFG00000020867	UPF2	99	93.218	Gambusia_affinis
ENSKMAG00000001071	UPF2	99	90.716	ENSGACG00000001080	UPF2	99	91.680	Gasterosteus_aculeatus
ENSKMAG00000001071	UPF2	92	84.773	ENSGAGG00000002700	UPF2	98	79.876	Gopherus_agassizii
ENSKMAG00000001071	UPF2	100	82.275	ENSGGOG00000001479	UPF2	99	82.003	Gorilla_gorilla
ENSKMAG00000001071	UPF2	100	94.164	ENSHBUG00000004249	UPF2	99	94.313	Haplochromis_burtoni
ENSKMAG00000001071	UPF2	99	81.761	ENSHGLG00000015176	-	92	84.426	Heterocephalus_glaber_female
ENSKMAG00000001071	UPF2	99	72.915	ENSHGLG00000003822	-	98	73.312	Heterocephalus_glaber_female
ENSKMAG00000001071	UPF2	99	77.981	ENSHGLG00100010036	UPF2	89	84.267	Heterocephalus_glaber_male
ENSKMAG00000001071	UPF2	100	89.474	ENSHCOG00000004025	UPF2	99	89.238	Hippocampus_comes
ENSKMAG00000001071	UPF2	99	87.579	ENSIPUG00000015524	UPF2	99	87.579	Ictalurus_punctatus
ENSKMAG00000001071	UPF2	99	82.567	ENSSTOG00000013075	UPF2	91	84.426	Ictidomys_tridecemlineatus
ENSKMAG00000001071	UPF2	100	78.997	ENSJJAG00000004913	Upf2	91	83.887	Jaculus_jaculus
ENSKMAG00000001071	UPF2	100	93.770	ENSLBEG00000016394	-	98	93.770	Labrus_bergylta
ENSKMAG00000001071	UPF2	80	91.296	ENSLBEG00000000728	-	93	91.034	Labrus_bergylta
ENSKMAG00000001071	UPF2	99	75.254	ENSLACG00000015945	UPF2	99	75.507	Latimeria_chalumnae
ENSKMAG00000001071	UPF2	100	86.724	ENSLOCG00000015698	UPF2	100	86.656	Lepisosteus_oculatus
ENSKMAG00000001071	UPF2	100	82.353	ENSMFAG00000043865	UPF2	99	82.081	Macaca_fascicularis
ENSKMAG00000001071	UPF2	100	82.353	ENSMMUG00000008241	UPF2	99	82.081	Macaca_mulatta
ENSKMAG00000001071	UPF2	80	82.972	ENSMNEG00000008062	UPF2	99	82.579	Macaca_nemestrina
ENSKMAG00000001071	UPF2	99	80.298	ENSMLEG00000036120	UPF2	99	79.937	Mandrillus_leucophaeus
ENSKMAG00000001071	UPF2	100	94.558	ENSMAMG00000018276	UPF2	99	94.558	Mastacembelus_armatus
ENSKMAG00000001071	UPF2	100	94.243	ENSMZEG00005021595	UPF2	99	94.243	Maylandia_zebra
ENSKMAG00000001071	UPF2	99	82.585	ENSMGAG00000004573	UPF2	91	85.299	Meleagris_gallopavo
ENSKMAG00000001071	UPF2	99	80.507	ENSMAUG00000016512	Upf2	98	80.553	Mesocricetus_auratus
ENSKMAG00000001071	UPF2	94	86.364	ENSMICG00000001716	UPF2	99	78.745	Microcebus_murinus
ENSKMAG00000001071	UPF2	100	81.225	ENSMOCG00000008263	Upf2	99	81.191	Microtus_ochrogaster
ENSKMAG00000001071	UPF2	99	89.258	ENSMMOG00000006528	UPF2	99	89.100	Mola_mola
ENSKMAG00000001071	UPF2	92	84.727	ENSMODG00000016794	UPF2	92	84.936	Monodelphis_domestica
ENSKMAG00000001071	UPF2	99	93.049	ENSMALG00000002663	UPF2	99	92.180	Monopterus_albus
ENSKMAG00000001071	UPF2	99	82.409	MGP_CAROLIEiJ_G0023157	Upf2	99	84.343	Mus_caroli
ENSKMAG00000001071	UPF2	99	82.647	ENSMUSG00000043241	Upf2	99	82.804	Mus_musculus
ENSKMAG00000001071	UPF2	100	82.104	MGP_PahariEiJ_G0019217	Upf2	100	82.617	Mus_pahari
ENSKMAG00000001071	UPF2	99	82.884	MGP_SPRETEiJ_G0024075	Upf2	100	82.804	Mus_spretus
ENSKMAG00000001071	UPF2	99	82.884	ENSMPUG00000001064	UPF2	92	84.936	Mustela_putorius_furo
ENSKMAG00000001071	UPF2	92	83.973	ENSMLUG00000000228	UPF2	92	84.112	Myotis_lucifugus
ENSKMAG00000001071	UPF2	100	94.322	ENSNBRG00000013629	UPF2	99	94.322	Neolamprologus_brichardi
ENSKMAG00000001071	UPF2	100	82.275	ENSNLEG00000012058	UPF2	99	82.003	Nomascus_leucogenys
ENSKMAG00000001071	UPF2	73	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSKMAG00000001071	UPF2	92	84.269	ENSODEG00000001290	UPF2	92	84.681	Octodon_degus
ENSKMAG00000001071	UPF2	100	94.322	ENSONIG00000017991	UPF2	99	94.322	Oreochromis_niloticus
ENSKMAG00000001071	UPF2	98	81.955	ENSOCUG00000006230	UPF2	92	84.576	Oryctolagus_cuniculus
ENSKMAG00000001071	UPF2	98	92.915	ENSORLG00000017189	UPF2	99	92.120	Oryzias_latipes
ENSKMAG00000001071	UPF2	98	92.920	ENSORLG00020005969	UPF2	99	92.199	Oryzias_latipes_hni
ENSKMAG00000001071	UPF2	98	92.920	ENSORLG00015005713	UPF2	99	92.199	Oryzias_latipes_hsok
ENSKMAG00000001071	UPF2	99	88.389	ENSOMEG00000023420	UPF2	97	88.705	Oryzias_melastigma
ENSKMAG00000001071	UPF2	100	82.418	ENSOGAG00000005796	UPF2	99	81.832	Otolemur_garnettii
ENSKMAG00000001071	UPF2	92	84.426	ENSOARG00000014587	UPF2	92	84.622	Ovis_aries
ENSKMAG00000001071	UPF2	99	79.407	ENSPPAG00000037953	UPF2	99	79.389	Pan_paniscus
ENSKMAG00000001071	UPF2	92	84.872	ENSPPRG00000000690	UPF2	92	84.851	Panthera_pardus
ENSKMAG00000001071	UPF2	92	84.872	ENSPTIG00000008867	UPF2	92	84.851	Panthera_tigris_altaica
ENSKMAG00000001071	UPF2	100	82.275	ENSPTRG00000002291	UPF2	99	82.003	Pan_troglodytes
ENSKMAG00000001071	UPF2	100	82.353	ENSPANG00000023399	UPF2	99	82.081	Papio_anubis
ENSKMAG00000001071	UPF2	100	87.765	ENSPKIG00000025502	UPF2	99	86.353	Paramormyrops_kingsleyae
ENSKMAG00000001071	UPF2	51	85.759	ENSPSIG00000015158	UPF2	82	85.626	Pelodiscus_sinensis
ENSKMAG00000001071	UPF2	99	88.468	ENSPMGG00000005259	UPF2	99	88.547	Periophthalmus_magnuspinnatus
ENSKMAG00000001071	UPF2	92	77.231	ENSPEMG00000015731	Upf2	90	84.255	Peromyscus_maniculatus_bairdii
ENSKMAG00000001071	UPF2	100	81.989	ENSPCIG00000006656	UPF2	99	82.224	Phascolarctos_cinereus
ENSKMAG00000001071	UPF2	100	93.454	ENSPFOG00000017118	UPF2	99	93.375	Poecilia_formosa
ENSKMAG00000001071	UPF2	100	93.533	ENSPLAG00000005094	UPF2	99	93.454	Poecilia_latipinna
ENSKMAG00000001071	UPF2	100	93.533	ENSPMEG00000017009	UPF2	99	93.454	Poecilia_mexicana
ENSKMAG00000001071	UPF2	99	91.706	ENSPREG00000021880	UPF2	99	92.180	Poecilia_reticulata
ENSKMAG00000001071	UPF2	66	84.142	ENSPPYG00000002089	-	100	84.198	Pongo_abelii
ENSKMAG00000001071	UPF2	86	75.023	ENSPCAG00000000684	UPF2	86	75.204	Procavia_capensis
ENSKMAG00000001071	UPF2	99	79.570	ENSPCOG00000021656	UPF2	99	79.137	Propithecus_coquereli
ENSKMAG00000001071	UPF2	92	77.513	ENSPVAG00000017286	UPF2	92	77.551	Pteropus_vampyrus
ENSKMAG00000001071	UPF2	99	91.785	ENSPNYG00000017096	UPF2	99	91.785	Pundamilia_nyererei
ENSKMAG00000001071	UPF2	100	88.610	ENSPNAG00000009357	UPF2	99	88.531	Pygocentrus_nattereri
ENSKMAG00000001071	UPF2	99	78.436	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSKMAG00000001071	UPF2	99	81.132	ENSRBIG00000037780	UPF2	99	79.278	Rhinopithecus_bieti
ENSKMAG00000001071	UPF2	100	82.118	ENSRROG00000043547	UPF2	99	81.768	Rhinopithecus_roxellana
ENSKMAG00000001071	UPF2	100	81.711	ENSSBOG00000020012	UPF2	99	81.128	Saimiri_boliviensis_boliviensis
ENSKMAG00000001071	UPF2	99	86.482	ENSSFOG00015023788	upf2	99	86.245	Scleropages_formosus
ENSKMAG00000001071	UPF2	91	91.248	ENSSMAG00000007637	UPF2	99	90.767	Scophthalmus_maximus
ENSKMAG00000001071	UPF2	100	94.479	ENSSDUG00000017244	UPF2	98	94.558	Seriola_dumerili
ENSKMAG00000001071	UPF2	99	91.627	ENSSLDG00000016866	UPF2	99	91.153	Seriola_lalandi_dorsalis
ENSKMAG00000001071	UPF2	100	80.751	ENSSARG00000008615	UPF2	92	83.206	Sorex_araneus
ENSKMAG00000001071	UPF2	92	82.408	ENSSPUG00000014544	UPF2	90	82.624	Sphenodon_punctatus
ENSKMAG00000001071	UPF2	69	84.151	ENSSSCG00000011117	-	99	84.091	Sus_scrofa
ENSKMAG00000001071	UPF2	91	85.960	ENSTGUG00000002163	-	91	85.909	Taeniopygia_guttata
ENSKMAG00000001071	UPF2	100	92.350	ENSTRUG00000007519	UPF2	98	92.350	Takifugu_rubripes
ENSKMAG00000001071	UPF2	100	88.819	ENSTNIG00000004453	UPF2	99	87.953	Tetraodon_nigroviridis
ENSKMAG00000001071	UPF2	93	72.274	ENSTBEG00000012679	UPF2	92	74.030	Tupaia_belangeri
ENSKMAG00000001071	UPF2	92	84.399	ENSTTRG00000016388	UPF2	92	84.596	Tursiops_truncatus
ENSKMAG00000001071	UPF2	86	93.258	ENSUAMG00000023560	UPF2	89	93.258	Ursus_americanus
ENSKMAG00000001071	UPF2	99	82.964	ENSUMAG00000012953	UPF2	87	84.851	Ursus_maritimus
ENSKMAG00000001071	UPF2	81	93.548	ENSVPAG00000006763	UPF2	77	93.548	Vicugna_pacos
ENSKMAG00000001071	UPF2	99	82.964	ENSVVUG00000006166	UPF2	92	84.936	Vulpes_vulpes
ENSKMAG00000001071	UPF2	100	79.640	ENSXETG00000033103	UPF2	91	83.935	Xenopus_tropicalis
ENSKMAG00000001071	UPF2	99	93.365	ENSXCOG00000011604	UPF2	99	93.286	Xiphophorus_couchianus
ENSKMAG00000001071	UPF2	100	93.533	ENSXMAG00000017209	UPF2	99	93.454	Xiphophorus_maculatus