EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000001112 (Gene tree)
Gene ID: 108229120
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 2525 bases
Position: chrLWHD01000006.1:2759306-2761830
Accession: 108229120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000001443	RRM_1	PF00076.22	9.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000001483	PABPN1L-201	681	XM_017404796	ENSKMAP00000001443	226 (aa)	XP_017260285	-

Gene Model

Click here to download ENSKMAG00000001112's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001112's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001112	PABPN1L	93	90.995	ENSAPOG00000000685	PABPN1L	70	89.767	Acanthochromis_polyacanthus
ENSKMAG00000001112	PABPN1L	87	93.401	ENSACIG00000021400	PABPN1L	88	89.873	Amphilophus_citrinellus
ENSKMAG00000001112	PABPN1L	94	91.549	ENSAOCG00000019844	PABPN1L	82	90.698	Amphiprion_ocellaris
ENSKMAG00000001112	PABPN1L	94	91.080	ENSAPEG00000019534	PABPN1L	82	90.233	Amphiprion_percula
ENSKMAG00000001112	PABPN1L	93	90.995	ENSATEG00000011646	PABPN1L	86	89.767	Anabas_testudineus
ENSKMAG00000001112	PABPN1L	52	59.322	ENSAPLG00000009174	PABPN1L	81	65.625	Anas_platyrhynchos
ENSKMAG00000001112	PABPN1L	72	55.758	ENSACAG00000013250	PABPN1L	64	62.393	Anolis_carolinensis
ENSKMAG00000001112	PABPN1L	94	90.141	ENSACLG00000025147	PABPN1L	82	89.302	Astatotilapia_calliptera
ENSKMAG00000001112	PABPN1L	97	83.636	ENSCSEG00000001142	pabpn1l	81	85.782	Cynoglossus_semilaevis
ENSKMAG00000001112	PABPN1L	92	93.237	ENSCVAG00000015547	PABPN1L	82	91.628	Cyprinodon_variegatus
ENSKMAG00000001112	PABPN1L	94	66.197	ENSELUG00000018385	PABPN1L	82	65.888	Esox_lucius
ENSKMAG00000001112	PABPN1L	61	59.155	ENSFALG00000003319	PABPN1L	51	60.833	Ficedula_albicollis
ENSKMAG00000001112	PABPN1L	94	91.549	ENSFHEG00000018295	PABPN1L	82	90.698	Fundulus_heteroclitus
ENSKMAG00000001112	PABPN1L	92	77.358	ENSGMOG00000001475	PABPN1L	80	78.774	Gadus_morhua
ENSKMAG00000001112	PABPN1L	64	59.310	ENSGALG00000006242	PABPN1L	66	60.684	Gallus_gallus
ENSKMAG00000001112	PABPN1L	92	93.720	ENSGAFG00000012565	PABPN1L	82	92.093	Gambusia_affinis
ENSKMAG00000001112	PABPN1L	96	82.805	ENSGACG00000015428	PABPN1L	82	83.105	Gasterosteus_aculeatus
ENSKMAG00000001112	PABPN1L	94	90.141	ENSHBUG00000002388	PABPN1L	82	89.302	Haplochromis_burtoni
ENSKMAG00000001112	PABPN1L	95	89.720	ENSHCOG00000004151	PABPN1L	80	89.302	Hippocampus_comes
ENSKMAG00000001112	PABPN1L	63	67.568	ENSIPUG00000023583	PABPN1L	63	72.131	Ictalurus_punctatus
ENSKMAG00000001112	PABPN1L	95	84.259	ENSLBEG00000011647	PABPN1L	79	86.636	Labrus_bergylta
ENSKMAG00000001112	PABPN1L	94	90.141	ENSMZEG00005002186	PABPN1L	82	89.302	Maylandia_zebra
ENSKMAG00000001112	PABPN1L	93	86.256	ENSMMOG00000017714	PABPN1L	90	86.256	Mola_mola
ENSKMAG00000001112	PABPN1L	94	88.732	ENSMALG00000016926	PABPN1L	82	87.907	Monopterus_albus
ENSKMAG00000001112	PABPN1L	94	90.141	ENSNBRG00000017078	PABPN1L	91	89.302	Neolamprologus_brichardi
ENSKMAG00000001112	PABPN1L	100	84.956	ENSORLG00000026560	PABPN1L	82	85.116	Oryzias_latipes
ENSKMAG00000001112	PABPN1L	100	84.956	ENSORLG00020015068	PABPN1L	82	85.116	Oryzias_latipes_hni
ENSKMAG00000001112	PABPN1L	100	84.956	ENSORLG00015000397	PABPN1L	82	85.116	Oryzias_latipes_hsok
ENSKMAG00000001112	PABPN1L	100	81.858	ENSOMEG00000017896	PABPN1L	58	82.326	Oryzias_melastigma
ENSKMAG00000001112	PABPN1L	65	64.667	ENSPSIG00000003404	PABPN1L	52	72.727	Pelodiscus_sinensis
ENSKMAG00000001112	PABPN1L	93	83.886	ENSPMGG00000013927	PABPN1L	95	82.326	Periophthalmus_magnuspinnatus
ENSKMAG00000001112	PABPN1L	58	62.687	ENSPCIG00000007038	-	67	69.072	Phascolarctos_cinereus
ENSKMAG00000001112	PABPN1L	92	93.720	ENSPFOG00000007001	PABPN1L	82	92.093	Poecilia_formosa
ENSKMAG00000001112	PABPN1L	92	93.720	ENSPLAG00000018431	PABPN1L	82	92.093	Poecilia_latipinna
ENSKMAG00000001112	PABPN1L	80	86.957	ENSPMEG00000000169	-	91	86.957	Poecilia_mexicana
ENSKMAG00000001112	PABPN1L	92	93.720	ENSPMEG00000009108	PABPN1L	82	92.093	Poecilia_mexicana
ENSKMAG00000001112	PABPN1L	96	91.705	ENSPREG00000022533	PABPN1L	93	92.093	Poecilia_reticulata
ENSKMAG00000001112	PABPN1L	94	90.141	ENSPNYG00000004803	PABPN1L	82	89.302	Pundamilia_nyererei
ENSKMAG00000001112	PABPN1L	94	85.321	ENSSMAG00000021348	PABPN1L	82	82.273	Scophthalmus_maximus
ENSKMAG00000001112	PABPN1L	94	92.019	ENSSDUG00000006986	PABPN1L	82	91.163	Seriola_dumerili
ENSKMAG00000001112	PABPN1L	94	92.019	ENSSLDG00000021845	PABPN1L	82	91.163	Seriola_lalandi_dorsalis
ENSKMAG00000001112	PABPN1L	95	90.698	ENSSPAG00000017978	PABPN1L	82	90.698	Stegastes_partitus
ENSKMAG00000001112	PABPN1L	96	78.802	ENSTRUG00000024725	PABPN1L	80	79.070	Takifugu_rubripes
ENSKMAG00000001112	PABPN1L	85	92.188	ENSTNIG00000009416	PABPN1L	100	92.188	Tetraodon_nigroviridis
ENSKMAG00000001112	PABPN1L	92	93.237	ENSXCOG00000003254	PABPN1L	93	91.628	Xiphophorus_couchianus
ENSKMAG00000001112	PABPN1L	88	93.434	ENSXMAG00000029090	PABPN1L	89	93.434	Xiphophorus_maculatus