EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000001149 (Gene tree)
Gene ID: 108248493
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 8146 bases
Position: chrLWHD01000348.1:249990-258135
Accession: 108248493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000001461	RNA_ligase	PF09414.10	1.1e-08	1	1
ENSKMAP00000001469	RNA_ligase	PF09414.10	1.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000001501	-	4108	XM_017437296	ENSKMAP00000001461	909 (aa)	XP_017292785	UPI0007F913AD
ENSKMAT00000001509	-	3814	XM_017437295	ENSKMAP00000001469	922 (aa)	XP_017292784	UPI0007F8EC6F

Gene Model

Click here to download ENSKMAG00000001149's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001149	lig4	99	65.670	ENSG00000174405	LIG4	100	65.758	Homo_sapiens
ENSKMAG00000001149	lig4	100	85.919	ENSAPOG00000000866	lig4	100	85.919	Acanthochromis_polyacanthus
ENSKMAG00000001149	lig4	99	64.693	ENSAMEG00000019685	LIG4	99	64.693	Ailuropoda_melanoleuca
ENSKMAG00000001149	lig4	99	85.809	ENSACIG00000018309	lig4	99	85.809	Amphilophus_citrinellus
ENSKMAG00000001149	lig4	100	85.809	ENSAOCG00000011768	lig4	100	85.809	Amphiprion_ocellaris
ENSKMAG00000001149	lig4	100	85.809	ENSAPEG00000017815	lig4	100	85.809	Amphiprion_percula
ENSKMAG00000001149	lig4	99	85.573	ENSATEG00000005583	lig4	99	85.573	Anabas_testudineus
ENSKMAG00000001149	lig4	96	65.982	ENSAPLG00000001673	LIG4	99	65.982	Anas_platyrhynchos
ENSKMAG00000001149	lig4	99	65.453	ENSACAG00000014566	LIG4	99	65.453	Anolis_carolinensis
ENSKMAG00000001149	lig4	99	65.338	ENSANAG00000012446	LIG4	99	65.338	Aotus_nancymaae
ENSKMAG00000001149	lig4	99	84.708	ENSACLG00000027051	lig4	99	84.708	Astatotilapia_calliptera
ENSKMAG00000001149	lig4	100	78.299	ENSAMXG00000008192	lig4	95	78.299	Astyanax_mexicanus
ENSKMAG00000001149	lig4	99	64.895	ENSBTAG00000015868	LIG4	99	64.895	Bos_taurus
ENSKMAG00000001149	lig4	99	65.116	ENSCJAG00000014689	LIG4	99	65.116	Callithrix_jacchus
ENSKMAG00000001149	lig4	99	64.673	ENSCAFG00000006031	LIG4	99	64.673	Canis_familiaris
ENSKMAG00000001149	lig4	99	64.673	ENSCAFG00020021230	LIG4	99	64.673	Canis_lupus_dingo
ENSKMAG00000001149	lig4	99	64.784	ENSCHIG00000001019	LIG4	99	64.784	Capra_hircus
ENSKMAG00000001149	lig4	99	64.563	ENSCAPG00000006284	LIG4	99	64.563	Cavia_aperea
ENSKMAG00000001149	lig4	99	64.452	ENSCPOG00000014266	LIG4	99	64.452	Cavia_porcellus
ENSKMAG00000001149	lig4	99	64.895	ENSCCAG00000019971	LIG4	99	64.895	Cebus_capucinus
ENSKMAG00000001149	lig4	99	65.165	ENSCATG00000021075	LIG4	99	65.165	Cercocebus_atys
ENSKMAG00000001149	lig4	99	64.978	ENSCLAG00000003376	LIG4	99	64.978	Chinchilla_lanigera
ENSKMAG00000001149	lig4	99	65.116	ENSCSAG00000000211	LIG4	99	65.116	Chlorocebus_sabaeus
ENSKMAG00000001149	lig4	99	67.703	ENSCPBG00000023291	LIG4	100	67.068	Chrysemys_picta_bellii
ENSKMAG00000001149	lig4	71	45.636	ENSCING00000009536	-	99	45.636	Ciona_intestinalis
ENSKMAG00000001149	lig4	83	44.342	ENSCSAVG00000010336	-	98	44.342	Ciona_savignyi
ENSKMAG00000001149	lig4	99	65.116	ENSCANG00000005805	LIG4	99	65.116	Colobus_angolensis_palliatus
ENSKMAG00000001149	lig4	99	64.602	ENSCGRG00001012072	Lig4	99	64.602	Cricetulus_griseus_chok1gshd
ENSKMAG00000001149	lig4	99	64.602	ENSCGRG00000013417	Lig4	99	64.602	Cricetulus_griseus_crigri
ENSKMAG00000001149	lig4	97	82.300	ENSCSEG00000013905	lig4	97	82.103	Cynoglossus_semilaevis
ENSKMAG00000001149	lig4	100	87.363	ENSCVAG00000007896	lig4	100	87.363	Cyprinodon_variegatus
ENSKMAG00000001149	lig4	100	77.448	ENSDARG00000060620	lig4	100	77.448	Danio_rerio
ENSKMAG00000001149	lig4	99	64.049	ENSDNOG00000000513	LIG4	99	64.049	Dasypus_novemcinctus
ENSKMAG00000001149	lig4	99	65.670	ENSDORG00000027303	Lig4	99	65.670	Dipodomys_ordii
ENSKMAG00000001149	lig4	86	31.879	FBgn0030506	Lig4	88	31.879	Drosophila_melanogaster
ENSKMAG00000001149	lig4	98	63.193	ENSETEG00000015563	LIG4	100	63.636	Echinops_telfairi
ENSKMAG00000001149	lig4	99	45.291	ENSEBUG00000014243	lig4	98	45.291	Eptatretus_burgeri
ENSKMAG00000001149	lig4	99	64.120	ENSEASG00005022073	LIG4	99	64.120	Equus_asinus_asinus
ENSKMAG00000001149	lig4	99	64.009	ENSECAG00000003257	LIG4	99	64.009	Equus_caballus
ENSKMAG00000001149	lig4	98	80.645	ENSELUG00000006787	lig4	99	80.756	Esox_lucius
ENSKMAG00000001149	lig4	99	64.341	ENSFCAG00000031985	LIG4	99	64.341	Felis_catus
ENSKMAG00000001149	lig4	87	68.428	ENSFALG00000004214	LIG4	97	68.428	Ficedula_albicollis
ENSKMAG00000001149	lig4	99	64.230	ENSFDAG00000008973	LIG4	99	64.230	Fukomys_damarensis
ENSKMAG00000001149	lig4	100	87.596	ENSFHEG00000007398	lig4	91	87.596	Fundulus_heteroclitus
ENSKMAG00000001149	lig4	85	79.589	ENSGMOG00000012843	lig4	99	79.589	Gadus_morhua
ENSKMAG00000001149	lig4	99	65.184	ENSGALG00000016854	LIG4	99	65.184	Gallus_gallus
ENSKMAG00000001149	lig4	99	86.199	ENSGAFG00000019779	lig4	96	86.199	Gambusia_affinis
ENSKMAG00000001149	lig4	99	83.333	ENSGACG00000014135	lig4	99	83.775	Gasterosteus_aculeatus
ENSKMAG00000001149	lig4	99	65.449	ENSGGOG00000027771	LIG4	99	65.449	Gorilla_gorilla
ENSKMAG00000001149	lig4	99	84.488	ENSHBUG00000006245	lig4	99	84.488	Haplochromis_burtoni
ENSKMAG00000001149	lig4	99	64.784	ENSHGLG00000000718	LIG4	99	64.784	Heterocephalus_glaber_female
ENSKMAG00000001149	lig4	99	64.784	ENSHGLG00100003265	LIG4	99	64.784	Heterocephalus_glaber_male
ENSKMAG00000001149	lig4	100	80.373	ENSHCOG00000012010	lig4	100	80.373	Hippocampus_comes
ENSKMAG00000001149	lig4	100	76.348	ENSIPUG00000013748	lig4	100	76.348	Ictalurus_punctatus
ENSKMAG00000001149	lig4	99	65.227	ENSSTOG00000024303	LIG4	99	65.227	Ictidomys_tridecemlineatus
ENSKMAG00000001149	lig4	99	66.113	ENSJJAG00000006750	Lig4	99	66.113	Jaculus_jaculus
ENSKMAG00000001149	lig4	91	85.091	ENSLBEG00000014578	lig4	99	85.091	Labrus_bergylta
ENSKMAG00000001149	lig4	100	67.105	ENSLACG00000003282	LIG4	100	67.105	Latimeria_chalumnae
ENSKMAG00000001149	lig4	100	71.522	ENSLOCG00000008901	lig4	99	71.522	Lepisosteus_oculatus
ENSKMAG00000001149	lig4	99	64.057	ENSLAFG00000031152	LIG4	99	64.057	Loxodonta_africana
ENSKMAG00000001149	lig4	99	65.338	ENSMFAG00000037235	LIG4	99	65.338	Macaca_fascicularis
ENSKMAG00000001149	lig4	99	65.227	ENSMMUG00000008874	LIG4	99	65.227	Macaca_mulatta
ENSKMAG00000001149	lig4	99	65.338	ENSMNEG00000023575	LIG4	99	65.338	Macaca_nemestrina
ENSKMAG00000001149	lig4	99	65.116	ENSMLEG00000026720	LIG4	99	65.116	Mandrillus_leucophaeus
ENSKMAG00000001149	lig4	100	85.385	ENSMAMG00000008472	lig4	99	85.385	Mastacembelus_armatus
ENSKMAG00000001149	lig4	99	84.598	ENSMZEG00005001855	lig4	99	84.598	Maylandia_zebra
ENSKMAG00000001149	lig4	100	64.583	ENSMGAG00000015532	LIG4	100	64.583	Meleagris_gallopavo
ENSKMAG00000001149	lig4	99	64.784	ENSMOCG00000019000	Lig4	99	64.784	Microtus_ochrogaster
ENSKMAG00000001149	lig4	100	84.725	ENSMMOG00000004390	lig4	100	84.725	Mola_mola
ENSKMAG00000001149	lig4	99	65.376	ENSMODG00000025064	LIG4	99	65.376	Monodelphis_domestica
ENSKMAG00000001149	lig4	100	84.945	ENSMALG00000008555	lig4	100	84.945	Monopterus_albus
ENSKMAG00000001149	lig4	99	64.673	MGP_CAROLIEiJ_G0030809	Lig4	99	64.673	Mus_caroli
ENSKMAG00000001149	lig4	99	64.230	ENSMUSG00000049717	Lig4	99	64.230	Mus_musculus
ENSKMAG00000001149	lig4	99	64.341	MGP_PahariEiJ_G0021270	Lig4	99	64.341	Mus_pahari
ENSKMAG00000001149	lig4	99	64.563	MGP_SPRETEiJ_G0031917	Lig4	99	64.563	Mus_spretus
ENSKMAG00000001149	lig4	99	65.083	ENSMPUG00000018675	LIG4	99	65.155	Mustela_putorius_furo
ENSKMAG00000001149	lig4	99	64.673	ENSMLUG00000001267	LIG4	99	64.673	Myotis_lucifugus
ENSKMAG00000001149	lig4	99	65.559	ENSNGAG00000013258	Lig4	99	65.559	Nannospalax_galili
ENSKMAG00000001149	lig4	99	84.598	ENSNBRG00000021252	lig4	99	84.598	Neolamprologus_brichardi
ENSKMAG00000001149	lig4	99	65.227	ENSNLEG00000007888	LIG4	99	65.227	Nomascus_leucogenys
ENSKMAG00000001149	lig4	99	64.784	ENSOPRG00000005765	LIG4	99	64.784	Ochotona_princeps
ENSKMAG00000001149	lig4	99	64.341	ENSODEG00000019683	LIG4	99	64.341	Octodon_degus
ENSKMAG00000001149	lig4	99	84.928	ENSONIG00000011969	lig4	99	84.928	Oreochromis_niloticus
ENSKMAG00000001149	lig4	99	65.116	ENSOCUG00000015734	LIG4	99	65.116	Oryctolagus_cuniculus
ENSKMAG00000001149	lig4	99	81.559	ENSORLG00000004041	lig4	99	81.559	Oryzias_latipes
ENSKMAG00000001149	lig4	99	81.778	ENSORLG00020019607	lig4	99	81.778	Oryzias_latipes_hni
ENSKMAG00000001149	lig4	99	81.778	ENSORLG00015017754	lig4	99	81.778	Oryzias_latipes_hsok
ENSKMAG00000001149	lig4	75	86.317	ENSOMEG00000003459	lig4	99	86.317	Oryzias_melastigma
ENSKMAG00000001149	lig4	99	64.895	ENSOGAG00000032120	LIG4	99	64.895	Otolemur_garnettii
ENSKMAG00000001149	lig4	81	68.792	ENSOARG00000005590	LIG4	97	68.792	Ovis_aries
ENSKMAG00000001149	lig4	99	65.227	ENSPPAG00000032998	LIG4	99	65.227	Pan_paniscus
ENSKMAG00000001149	lig4	99	64.563	ENSPPRG00000017804	LIG4	99	64.563	Panthera_pardus
ENSKMAG00000001149	lig4	99	64.673	ENSPTIG00000010051	LIG4	99	64.673	Panthera_tigris_altaica
ENSKMAG00000001149	lig4	99	65.338	ENSPTRG00000006025	LIG4	99	65.338	Pan_troglodytes
ENSKMAG00000001149	lig4	99	65.275	ENSPANG00000007562	LIG4	99	65.275	Papio_anubis
ENSKMAG00000001149	lig4	100	75.248	ENSPKIG00000011645	lig4	99	75.275	Paramormyrops_kingsleyae
ENSKMAG00000001149	lig4	100	66.228	ENSPSIG00000001504	LIG4	100	66.228	Pelodiscus_sinensis
ENSKMAG00000001149	lig4	98	77.940	ENSPMGG00000013486	lig4	100	77.133	Periophthalmus_magnuspinnatus
ENSKMAG00000001149	lig4	99	64.491	ENSPEMG00000000076	Lig4	99	64.491	Peromyscus_maniculatus_bairdii
ENSKMAG00000001149	lig4	99	64.823	ENSPCIG00000021882	LIG4	99	64.823	Phascolarctos_cinereus
ENSKMAG00000001149	lig4	100	87.171	ENSPFOG00000000797	lig4	100	87.171	Poecilia_formosa
ENSKMAG00000001149	lig4	100	87.061	ENSPLAG00000001196	lig4	100	87.061	Poecilia_latipinna
ENSKMAG00000001149	lig4	100	86.952	ENSPMEG00000021353	lig4	100	86.952	Poecilia_mexicana
ENSKMAG00000001149	lig4	100	86.294	ENSPREG00000007323	lig4	100	86.404	Poecilia_reticulata
ENSKMAG00000001149	lig4	99	65.227	ENSPPYG00000005540	LIG4	99	65.227	Pongo_abelii
ENSKMAG00000001149	lig4	99	64.673	ENSPVAG00000016403	LIG4	99	64.673	Pteropus_vampyrus
ENSKMAG00000001149	lig4	99	84.598	ENSPNYG00000009660	lig4	99	84.598	Pundamilia_nyererei
ENSKMAG00000001149	lig4	99	79.911	ENSPNAG00000028056	lig4	99	79.911	Pygocentrus_nattereri
ENSKMAG00000001149	lig4	99	79.911	ENSPNAG00000028069	LIG4	99	79.911	Pygocentrus_nattereri
ENSKMAG00000001149	lig4	99	63.898	ENSRNOG00000014605	Lig4	99	63.898	Rattus_norvegicus
ENSKMAG00000001149	lig4	99	64.230	ENSRBIG00000039962	LIG4	99	64.230	Rhinopithecus_bieti
ENSKMAG00000001149	lig4	99	65.116	ENSRROG00000006040	LIG4	99	65.116	Rhinopithecus_roxellana
ENSKMAG00000001149	lig4	99	65.006	ENSSBOG00000019029	LIG4	99	65.006	Saimiri_boliviensis_boliviensis
ENSKMAG00000001149	lig4	99	62.279	ENSSHAG00000009525	LIG4	99	62.611	Sarcophilus_harrisii
ENSKMAG00000001149	lig4	100	77.338	ENSSFOG00015012835	lig4	100	77.338	Scleropages_formosus
ENSKMAG00000001149	lig4	100	80.088	ENSSMAG00000011267	lig4	100	80.088	Scophthalmus_maximus
ENSKMAG00000001149	lig4	100	84.464	ENSSDUG00000010343	lig4	100	84.573	Seriola_dumerili
ENSKMAG00000001149	lig4	100	82.932	ENSSLDG00000003239	lig4	100	83.042	Seriola_lalandi_dorsalis
ENSKMAG00000001149	lig4	99	64.686	ENSSARG00000006573	LIG4	99	64.686	Sorex_araneus
ENSKMAG00000001149	lig4	92	67.262	ENSSPUG00000002444	LIG4	100	67.262	Sphenodon_punctatus
ENSKMAG00000001149	lig4	100	86.264	ENSSPAG00000001609	lig4	100	86.264	Stegastes_partitus
ENSKMAG00000001149	lig4	98	64.778	ENSSSCG00000009540	LIG4	99	64.778	Sus_scrofa
ENSKMAG00000001149	lig4	99	65.851	ENSTGUG00000010795	LIG4	99	65.851	Taeniopygia_guttata
ENSKMAG00000001149	lig4	100	83.187	ENSTRUG00000009984	lig4	100	83.187	Takifugu_rubripes
ENSKMAG00000001149	lig4	100	81.958	ENSTNIG00000010348	lig4	100	82.178	Tetraodon_nigroviridis
ENSKMAG00000001149	lig4	99	65.116	ENSTBEG00000017741	LIG4	99	65.116	Tupaia_belangeri
ENSKMAG00000001149	lig4	99	64.563	ENSTTRG00000012660	LIG4	99	64.563	Tursiops_truncatus
ENSKMAG00000001149	lig4	99	64.530	ENSUAMG00000003773	LIG4	99	64.530	Ursus_americanus
ENSKMAG00000001149	lig4	100	66.228	ENSXETG00000002654	lig4	100	66.228	Xenopus_tropicalis
ENSKMAG00000001149	lig4	100	86.404	ENSXCOG00000017401	lig4	100	86.404	Xiphophorus_couchianus
ENSKMAG00000001149	lig4	100	86.623	ENSXMAG00000015142	lig4	100	86.528	Xiphophorus_maculatus