EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000001202 (Gene tree)
Gene ID: 108247964
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 6969 bases
Position: chrLWHD01000305.1:33208-40176
Accession: 108247964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000001562	EXOSC1	PF10447.9	1.4e-15	1	1
ENSKMAP00000001575	EXOSC1	PF10447.9	3e-13	1	1
ENSKMAP00000001562	ECR1_N	PF14382.6	2.1e-11	1	1
ENSKMAP00000001575	ECR1_N	PF14382.6	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000001618	-	630	-	ENSKMAP00000001575	209 (aa)	-	-
ENSKMAT00000001605	-	2452	XM_017436401	ENSKMAP00000001562	237 (aa)	XP_017291890	UPI0007F93061

Gene Model

Click here to download ENSKMAG00000001202's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001202's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001202	exosc1	81	78.125	ENSG00000171311	EXOSC1	98	78.125	Homo_sapiens
ENSKMAG00000001202	exosc1	82	94.330	ENSAPOG00000007822	exosc1	100	94.330	Acanthochromis_polyacanthus
ENSKMAG00000001202	exosc1	81	78.646	ENSAMEG00000000129	EXOSC1	98	78.646	Ailuropoda_melanoleuca
ENSKMAG00000001202	exosc1	78	92.973	ENSACIG00000018956	exosc1	91	92.973	Amphilophus_citrinellus
ENSKMAG00000001202	exosc1	82	93.299	ENSAOCG00000010699	exosc1	100	93.299	Amphiprion_ocellaris
ENSKMAG00000001202	exosc1	76	81.667	ENSAPEG00000012690	exosc1	97	81.667	Amphiprion_percula
ENSKMAG00000001202	exosc1	82	94.330	ENSATEG00000018683	exosc1	100	94.330	Anabas_testudineus
ENSKMAG00000001202	exosc1	82	72.165	ENSACAG00000002101	EXOSC1	99	72.165	Anolis_carolinensis
ENSKMAG00000001202	exosc1	81	78.125	ENSANAG00000034669	EXOSC1	98	78.125	Aotus_nancymaae
ENSKMAG00000001202	exosc1	82	93.814	ENSACLG00000021243	exosc1	100	93.814	Astatotilapia_calliptera
ENSKMAG00000001202	exosc1	82	90.206	ENSAMXG00000011116	exosc1	100	90.206	Astyanax_mexicanus
ENSKMAG00000001202	exosc1	81	78.646	ENSBTAG00000012699	EXOSC1	98	78.646	Bos_taurus
ENSKMAG00000001202	exosc1	77	35.052	WBGene00012966	exos-1	92	35.052	Caenorhabditis_elegans
ENSKMAG00000001202	exosc1	81	77.604	ENSCJAG00000016586	EXOSC1	98	77.604	Callithrix_jacchus
ENSKMAG00000001202	exosc1	81	78.125	ENSCAFG00000009068	EXOSC1	93	78.125	Canis_familiaris
ENSKMAG00000001202	exosc1	81	78.125	ENSCAFG00020006002	EXOSC1	93	78.125	Canis_lupus_dingo
ENSKMAG00000001202	exosc1	81	78.646	ENSCHIG00000015253	EXOSC1	98	78.646	Capra_hircus
ENSKMAG00000001202	exosc1	81	77.487	ENSTSYG00000000760	EXOSC1	98	77.487	Carlito_syrichta
ENSKMAG00000001202	exosc1	81	78.125	ENSCPOG00000001173	EXOSC1	98	78.125	Cavia_porcellus
ENSKMAG00000001202	exosc1	80	44.048	ENSCCAG00000023986	EXOSC1	97	44.048	Cebus_capucinus
ENSKMAG00000001202	exosc1	81	78.125	ENSCATG00000034114	EXOSC1	98	78.125	Cercocebus_atys
ENSKMAG00000001202	exosc1	81	78.125	ENSCLAG00000002463	EXOSC1	98	78.125	Chinchilla_lanigera
ENSKMAG00000001202	exosc1	81	77.604	ENSCSAG00000005870	EXOSC1	98	77.604	Chlorocebus_sabaeus
ENSKMAG00000001202	exosc1	78	66.304	ENSCHOG00000006477	EXOSC1	98	66.304	Choloepus_hoffmanni
ENSKMAG00000001202	exosc1	81	51.295	ENSCING00000022734	-	92	51.295	Ciona_intestinalis
ENSKMAG00000001202	exosc1	81	54.404	ENSCSAVG00000010865	-	98	54.404	Ciona_savignyi
ENSKMAG00000001202	exosc1	81	78.125	ENSCANG00000034159	EXOSC1	98	78.125	Colobus_angolensis_palliatus
ENSKMAG00000001202	exosc1	81	77.083	ENSCGRG00001000335	Exosc1	98	77.083	Cricetulus_griseus_chok1gshd
ENSKMAG00000001202	exosc1	81	77.083	ENSCGRG00000011602	Exosc1	98	77.083	Cricetulus_griseus_crigri
ENSKMAG00000001202	exosc1	84	90.857	ENSCSEG00000007895	exosc1	99	90.857	Cynoglossus_semilaevis
ENSKMAG00000001202	exosc1	82	87.629	ENSCVAG00000016748	exosc1	100	87.629	Cyprinodon_variegatus
ENSKMAG00000001202	exosc1	82	90.206	ENSDARG00000059841	exosc1	100	90.206	Danio_rerio
ENSKMAG00000001202	exosc1	61	75.862	ENSDNOG00000007983	EXOSC1	98	75.862	Dasypus_novemcinctus
ENSKMAG00000001202	exosc1	81	77.604	ENSDORG00000016528	Exosc1	98	77.604	Dipodomys_ordii
ENSKMAG00000001202	exosc1	81	46.701	FBgn0032346	Csl4	96	46.701	Drosophila_melanogaster
ENSKMAG00000001202	exosc1	81	76.562	ENSETEG00000002469	-	98	76.562	Echinops_telfairi
ENSKMAG00000001202	exosc1	80	64.767	ENSEBUG00000008164	exosc1	97	64.767	Eptatretus_burgeri
ENSKMAG00000001202	exosc1	81	70.157	ENSEASG00005008684	EXOSC1	98	70.157	Equus_asinus_asinus
ENSKMAG00000001202	exosc1	81	77.604	ENSEEUG00000005647	EXOSC1	98	77.604	Erinaceus_europaeus
ENSKMAG00000001202	exosc1	89	77.928	ENSELUG00000017369	exosc1	100	84.884	Esox_lucius
ENSKMAG00000001202	exosc1	81	78.646	ENSFCAG00000040563	EXOSC1	98	76.923	Felis_catus
ENSKMAG00000001202	exosc1	81	74.346	ENSFALG00000008450	EXOSC1	98	74.346	Ficedula_albicollis
ENSKMAG00000001202	exosc1	81	78.646	ENSFDAG00000000846	EXOSC1	98	78.646	Fukomys_damarensis
ENSKMAG00000001202	exosc1	82	88.144	ENSFHEG00000009154	exosc1	100	88.144	Fundulus_heteroclitus
ENSKMAG00000001202	exosc1	82	91.237	ENSGMOG00000008993	exosc1	100	91.237	Gadus_morhua
ENSKMAG00000001202	exosc1	80	73.214	ENSGALG00000039917	EXOSC1	99	83.333	Gallus_gallus
ENSKMAG00000001202	exosc1	84	87.000	ENSGAFG00000010265	exosc1	98	87.000	Gambusia_affinis
ENSKMAG00000001202	exosc1	82	90.206	ENSGACG00000018936	exosc1	100	90.206	Gasterosteus_aculeatus
ENSKMAG00000001202	exosc1	81	75.916	ENSGAGG00000019192	EXOSC1	98	75.916	Gopherus_agassizii
ENSKMAG00000001202	exosc1	81	76.331	ENSGGOG00000003099	EXOSC1	98	76.331	Gorilla_gorilla
ENSKMAG00000001202	exosc1	82	93.814	ENSHBUG00000017857	exosc1	100	93.814	Haplochromis_burtoni
ENSKMAG00000001202	exosc1	81	78.646	ENSHGLG00000016927	EXOSC1	98	78.646	Heterocephalus_glaber_female
ENSKMAG00000001202	exosc1	81	78.646	ENSHGLG00100012208	EXOSC1	98	78.646	Heterocephalus_glaber_male
ENSKMAG00000001202	exosc1	82	91.753	ENSHCOG00000019882	exosc1	100	91.753	Hippocampus_comes
ENSKMAG00000001202	exosc1	82	87.629	ENSIPUG00000007685	exosc1	100	87.629	Ictalurus_punctatus
ENSKMAG00000001202	exosc1	81	77.604	ENSSTOG00000006615	EXOSC1	98	77.604	Ictidomys_tridecemlineatus
ENSKMAG00000001202	exosc1	81	78.125	ENSJJAG00000013311	Exosc1	98	78.125	Jaculus_jaculus
ENSKMAG00000001202	exosc1	82	92.784	ENSLBEG00000011448	exosc1	100	92.784	Labrus_bergylta
ENSKMAG00000001202	exosc1	82	65.169	ENSLOCG00000003776	exosc1	100	65.169	Lepisosteus_oculatus
ENSKMAG00000001202	exosc1	81	78.125	ENSLAFG00000015983	EXOSC1	98	78.125	Loxodonta_africana
ENSKMAG00000001202	exosc1	81	78.125	ENSMFAG00000001493	EXOSC1	98	78.125	Macaca_fascicularis
ENSKMAG00000001202	exosc1	81	78.534	ENSMMUG00000020028	EXOSC1	98	76.331	Macaca_mulatta
ENSKMAG00000001202	exosc1	81	78.125	ENSMNEG00000029816	EXOSC1	98	78.125	Macaca_nemestrina
ENSKMAG00000001202	exosc1	81	72.396	ENSMLEG00000027643	EXOSC1	98	72.396	Mandrillus_leucophaeus
ENSKMAG00000001202	exosc1	82	94.330	ENSMAMG00000012200	exosc1	100	94.330	Mastacembelus_armatus
ENSKMAG00000001202	exosc1	82	93.814	ENSMZEG00005007042	exosc1	100	93.814	Maylandia_zebra
ENSKMAG00000001202	exosc1	81	76.331	ENSMAUG00000020462	-	98	76.331	Mesocricetus_auratus
ENSKMAG00000001202	exosc1	81	78.125	ENSMICG00000007664	EXOSC1	98	76.923	Microcebus_murinus
ENSKMAG00000001202	exosc1	81	77.083	ENSMOCG00000006004	-	98	77.083	Microtus_ochrogaster
ENSKMAG00000001202	exosc1	80	72.632	ENSMOCG00000017124	-	97	72.632	Microtus_ochrogaster
ENSKMAG00000001202	exosc1	82	69.072	ENSMMOG00000021403	exosc1	98	71.951	Mola_mola
ENSKMAG00000001202	exosc1	81	77.720	ENSMODG00000004213	EXOSC1	98	77.720	Monodelphis_domestica
ENSKMAG00000001202	exosc1	78	93.514	ENSMALG00000007061	exosc1	93	93.514	Monopterus_albus
ENSKMAG00000001202	exosc1	81	77.083	MGP_CAROLIEiJ_G0022959	Exosc1	98	77.083	Mus_caroli
ENSKMAG00000001202	exosc1	81	77.487	ENSMUSG00000034321	Exosc1	98	77.487	Mus_musculus
ENSKMAG00000001202	exosc1	81	77.083	MGP_PahariEiJ_G0014449	Exosc1	98	77.083	Mus_pahari
ENSKMAG00000001202	exosc1	81	77.083	MGP_SPRETEiJ_G0023880	Exosc1	98	77.083	Mus_spretus
ENSKMAG00000001202	exosc1	81	78.646	ENSMPUG00000017044	EXOSC1	98	78.646	Mustela_putorius_furo
ENSKMAG00000001202	exosc1	81	78.125	ENSMLUG00000009228	EXOSC1	98	78.125	Myotis_lucifugus
ENSKMAG00000001202	exosc1	81	75.521	ENSNGAG00000022033	Exosc1	98	75.521	Nannospalax_galili
ENSKMAG00000001202	exosc1	82	73.988	ENSNBRG00000024007	exosc1	100	73.988	Neolamprologus_brichardi
ENSKMAG00000001202	exosc1	81	77.604	ENSNLEG00000013872	EXOSC1	98	77.604	Nomascus_leucogenys
ENSKMAG00000001202	exosc1	81	78.125	ENSOPRG00000005065	EXOSC1	98	78.125	Ochotona_princeps
ENSKMAG00000001202	exosc1	81	78.646	ENSODEG00000016709	EXOSC1	98	78.646	Octodon_degus
ENSKMAG00000001202	exosc1	82	93.333	ENSONIG00000017683	exosc1	100	93.333	Oreochromis_niloticus
ENSKMAG00000001202	exosc1	55	89.474	ENSOANG00000006563	EXOSC1	98	86.179	Ornithorhynchus_anatinus
ENSKMAG00000001202	exosc1	81	76.684	ENSOCUG00000011898	-	98	76.684	Oryctolagus_cuniculus
ENSKMAG00000001202	exosc1	81	72.396	ENSOCUG00000026461	-	98	72.396	Oryctolagus_cuniculus
ENSKMAG00000001202	exosc1	82	88.205	ENSORLG00000011595	exosc1	100	88.205	Oryzias_latipes
ENSKMAG00000001202	exosc1	82	88.205	ENSORLG00020005831	exosc1	100	88.205	Oryzias_latipes_hni
ENSKMAG00000001202	exosc1	82	87.692	ENSORLG00015004317	exosc1	100	87.692	Oryzias_latipes_hsok
ENSKMAG00000001202	exosc1	82	73.846	ENSOMEG00000013907	exosc1	100	73.846	Oryzias_melastigma
ENSKMAG00000001202	exosc1	81	77.604	ENSOGAG00000016259	EXOSC1	98	77.604	Otolemur_garnettii
ENSKMAG00000001202	exosc1	81	78.646	ENSOARG00000010136	EXOSC1	98	78.646	Ovis_aries
ENSKMAG00000001202	exosc1	81	72.165	ENSPPAG00000039842	EXOSC1	98	72.165	Pan_paniscus
ENSKMAG00000001202	exosc1	81	78.646	ENSPPRG00000023366	EXOSC1	98	78.646	Panthera_pardus
ENSKMAG00000001202	exosc1	81	78.646	ENSPTIG00000017701	EXOSC1	98	78.646	Panthera_tigris_altaica
ENSKMAG00000001202	exosc1	81	78.125	ENSPTRG00000002808	EXOSC1	98	78.125	Pan_troglodytes
ENSKMAG00000001202	exosc1	81	78.125	ENSPANG00000021324	EXOSC1	98	78.125	Papio_anubis
ENSKMAG00000001202	exosc1	82	90.722	ENSPKIG00000016037	exosc1	100	90.722	Paramormyrops_kingsleyae
ENSKMAG00000001202	exosc1	75	64.737	ENSPSIG00000013571	EXOSC1	98	78.512	Pelodiscus_sinensis
ENSKMAG00000001202	exosc1	82	92.982	ENSPMGG00000014002	exosc1	100	92.982	Periophthalmus_magnuspinnatus
ENSKMAG00000001202	exosc1	81	77.083	ENSPEMG00000010710	-	98	77.083	Peromyscus_maniculatus_bairdii
ENSKMAG00000001202	exosc1	78	68.449	ENSPMAG00000000195	exosc1	95	68.449	Petromyzon_marinus
ENSKMAG00000001202	exosc1	81	77.083	ENSPCIG00000002210	EXOSC1	97	77.083	Phascolarctos_cinereus
ENSKMAG00000001202	exosc1	84	86.500	ENSPFOG00000006755	exosc1	98	86.500	Poecilia_formosa
ENSKMAG00000001202	exosc1	82	86.598	ENSPLAG00000005880	exosc1	100	86.598	Poecilia_latipinna
ENSKMAG00000001202	exosc1	84	86.500	ENSPMEG00000015598	exosc1	98	86.500	Poecilia_mexicana
ENSKMAG00000001202	exosc1	85	85.876	ENSPREG00000000405	exosc1	98	85.876	Poecilia_reticulata
ENSKMAG00000001202	exosc1	81	78.125	ENSPPYG00000002531	EXOSC1	98	78.125	Pongo_abelii
ENSKMAG00000001202	exosc1	81	77.083	ENSPCAG00000009135	EXOSC1	98	77.083	Procavia_capensis
ENSKMAG00000001202	exosc1	81	71.875	ENSPCOG00000027539	EXOSC1	98	71.875	Propithecus_coquereli
ENSKMAG00000001202	exosc1	81	78.125	ENSPVAG00000003372	EXOSC1	98	78.125	Pteropus_vampyrus
ENSKMAG00000001202	exosc1	82	93.814	ENSPNYG00000021745	exosc1	100	93.814	Pundamilia_nyererei
ENSKMAG00000001202	exosc1	82	89.175	ENSPNAG00000001944	exosc1	100	89.175	Pygocentrus_nattereri
ENSKMAG00000001202	exosc1	81	77.083	ENSRNOG00000048708	Exosc1	98	77.083	Rattus_norvegicus
ENSKMAG00000001202	exosc1	81	78.125	ENSRBIG00000035618	EXOSC1	98	78.125	Rhinopithecus_bieti
ENSKMAG00000001202	exosc1	81	78.534	ENSRROG00000032589	EXOSC1	98	76.331	Rhinopithecus_roxellana
ENSKMAG00000001202	exosc1	54	38.037	YNL232W	CSL4	55	38.037	Saccharomyces_cerevisiae
ENSKMAG00000001202	exosc1	81	78.125	ENSSBOG00000000359	EXOSC1	98	78.125	Saimiri_boliviensis_boliviensis
ENSKMAG00000001202	exosc1	61	86.986	ENSSHAG00000018219	EXOSC1	99	86.986	Sarcophilus_harrisii
ENSKMAG00000001202	exosc1	82	89.175	ENSSFOG00015009069	exosc1	100	89.175	Scleropages_formosus
ENSKMAG00000001202	exosc1	82	87.113	ENSSFOG00015016289	-	100	87.113	Scleropages_formosus
ENSKMAG00000001202	exosc1	82	93.814	ENSSMAG00000003721	exosc1	100	93.814	Scophthalmus_maximus
ENSKMAG00000001202	exosc1	82	93.299	ENSSDUG00000002993	exosc1	100	93.299	Seriola_dumerili
ENSKMAG00000001202	exosc1	82	93.299	ENSSLDG00000025181	exosc1	100	93.299	Seriola_lalandi_dorsalis
ENSKMAG00000001202	exosc1	81	67.539	ENSSARG00000000162	EXOSC1	98	67.539	Sorex_araneus
ENSKMAG00000001202	exosc1	81	72.775	ENSSPUG00000012263	EXOSC1	98	72.775	Sphenodon_punctatus
ENSKMAG00000001202	exosc1	97	78.166	ENSSPAG00000016792	exosc1	99	78.166	Stegastes_partitus
ENSKMAG00000001202	exosc1	81	78.010	ENSSSCG00000010518	EXOSC1	89	78.010	Sus_scrofa
ENSKMAG00000001202	exosc1	81	73.822	ENSTGUG00000009692	EXOSC1	98	73.822	Taeniopygia_guttata
ENSKMAG00000001202	exosc1	80	80.000	ENSTRUG00000007706	exosc1	98	80.000	Takifugu_rubripes
ENSKMAG00000001202	exosc1	82	79.293	ENSTNIG00000014079	exosc1	99	79.293	Tetraodon_nigroviridis
ENSKMAG00000001202	exosc1	81	72.775	ENSTBEG00000006011	EXOSC1	98	72.775	Tupaia_belangeri
ENSKMAG00000001202	exosc1	78	79.891	ENSTTRG00000009887	EXOSC1	100	79.891	Tursiops_truncatus
ENSKMAG00000001202	exosc1	81	63.021	ENSUAMG00000010266	EXOSC1	98	63.021	Ursus_americanus
ENSKMAG00000001202	exosc1	81	64.062	ENSUMAG00000022002	EXOSC1	98	64.062	Ursus_maritimus
ENSKMAG00000001202	exosc1	81	78.534	ENSVVUG00000023192	EXOSC1	62	78.534	Vulpes_vulpes
ENSKMAG00000001202	exosc1	82	76.289	ENSXETG00000003434	exosc1	100	76.289	Xenopus_tropicalis
ENSKMAG00000001202	exosc1	58	90.083	ENSXCOG00000014499	exosc1	93	90.083	Xiphophorus_couchianus
ENSKMAG00000001202	exosc1	85	85.311	ENSXMAG00000023382	exosc1	98	85.311	Xiphophorus_maculatus