EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000001908 (Gene tree)
Gene ID: 108241090
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 8567 bases
Position: chrLWHD01000082.1:382048-390614
Accession: 108241090
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000002507	GTP_EFTU	PF00009.27	2.7e-06	1	1
ENSKMAP00000002539	MMR_HSR1	PF01926.23	0.00014	1	1
ENSKMAP00000002507	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000002590	-	567	-	ENSKMAP00000002539	188 (aa)	-	-
ENSKMAT00000002558	-	2800	XM_017425008	ENSKMAP00000002507	200 (aa)	XP_017280497	UPI0007F8E463

Gene Model

Click here to download ENSKMAG00000001908's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001908's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000001908	rab13	89	56.287	ENSKMAG00000020392	rab15	82	54.857
ENSKMAG00000001908	rab13	84	36.478	ENSKMAG00000017893	mras	86	34.637
ENSKMAG00000001908	rab13	62	31.624	ENSKMAG00000004435	arl3l2	60	31.624
ENSKMAG00000001908	rab13	96	37.824	ENSKMAG00000003938	kras	98	37.824
ENSKMAG00000001908	rab13	85	30.899	ENSKMAG00000011954	dnajc27	65	30.899
ENSKMAG00000001908	rab13	87	41.436	ENSKMAG00000002862	zgc:101559	77	41.436
ENSKMAG00000001908	rab13	84	45.062	ENSKMAG00000002545	-	77	45.062
ENSKMAG00000001908	rab13	62	30.252	ENSKMAG00000020210	arl4aa	61	30.252
ENSKMAG00000001908	rab13	86	37.888	ENSKMAG00000018270	rab23	77	37.017
ENSKMAG00000001908	rab13	95	43.455	ENSKMAG00000007364	rab18b	93	43.455
ENSKMAG00000001908	rab13	86	49.068	ENSKMAG00000004439	rab30	83	47.929
ENSKMAG00000001908	rab13	88	50.000	ENSKMAG00000012657	-	76	50.000
ENSKMAG00000001908	rab13	82	43.478	ENSKMAG00000020034	-	57	42.262
ENSKMAG00000001908	rab13	88	44.311	ENSKMAG00000008625	RAB39B	81	43.931
ENSKMAG00000001908	rab13	89	44.186	ENSKMAG00000015507	rab6ba	82	44.186
ENSKMAG00000001908	rab13	84	41.358	ENSKMAG00000019964	rab9b	83	41.071
ENSKMAG00000001908	rab13	93	37.113	ENSKMAG00000019341	rab34b	77	37.113
ENSKMAG00000001908	rab13	81	46.053	ENSKMAG00000013146	-	79	46.053
ENSKMAG00000001908	rab13	93	33.702	ENSKMAG00000017150	-	81	33.702
ENSKMAG00000001908	rab13	91	40.805	ENSKMAG00000007267	rab42a	80	40.805
ENSKMAG00000001908	rab13	95	40.104	ENSKMAG00000005111	rab5aa	89	40.104
ENSKMAG00000001908	rab13	88	36.527	ENSKMAG00000001922	Ha-ras	94	36.313
ENSKMAG00000001908	rab13	96	53.571	ENSKMAG00000014038	-	93	53.571
ENSKMAG00000001908	rab13	86	35.556	ENSKMAG00000003080	si:cabz01085950.1	89	35.556
ENSKMAG00000001908	rab13	62	30.769	ENSKMAG00000009772	arl3	62	30.769
ENSKMAG00000001908	rab13	92	54.023	ENSKMAG00000006854	rab35b	100	47.783
ENSKMAG00000001908	rab13	95	38.265	ENSKMAG00000003646	-	98	38.265
ENSKMAG00000001908	rab13	98	44.211	ENSKMAG00000009033	rab11bb	87	44.211
ENSKMAG00000001908	rab13	89	42.105	ENSKMAG00000012778	si:dkey-34d22.5	77	42.105
ENSKMAG00000001908	rab13	88	39.053	ENSKMAG00000020013	-	87	38.547
ENSKMAG00000001908	rab13	98	46.798	ENSKMAG00000018973	-	92	46.798
ENSKMAG00000001908	rab13	80	30.719	ENSKMAG00000017791	-	80	30.719
ENSKMAG00000001908	rab13	95	34.444	ENSKMAG00000020448	rheb	96	34.444
ENSKMAG00000001908	rab13	86	41.615	ENSKMAG00000020038	rab5c	80	38.418
ENSKMAG00000001908	rab13	95	34.444	ENSKMAG00000019397	rhebl1	96	34.444
ENSKMAG00000001908	rab13	86	45.679	ENSKMAG00000020250	rab4a	81	45.349
ENSKMAG00000001908	rab13	94	43.085	ENSKMAG00000015488	rab25b	90	43.085
ENSKMAG00000001908	rab13	89	30.994	ENSKMAG00000000984	rasd4	82	30.058
ENSKMAG00000001908	rab13	84	49.367	ENSKMAG00000009799	rab2a	79	48.810
ENSKMAG00000001908	rab13	83	32.051	ENSKMAG00000012723	rabl2	68	32.051
ENSKMAG00000001908	rab13	95	38.144	ENSKMAG00000017417	-	88	38.144
ENSKMAG00000001908	rab13	94	36.408	ENSKMAG00000019647	rab34a	77	36.408
ENSKMAG00000001908	rab13	78	43.624	ENSKMAG00000003105	rab33ba	63	43.624
ENSKMAG00000001908	rab13	91	49.419	ENSKMAG00000003494	si:dkey-16l2.16	86	47.253
ENSKMAG00000001908	rab13	99	52.525	ENSKMAG00000017357	rab1ab	96	52.525
ENSKMAG00000001908	rab13	96	35.233	ENSKMAG00000020733	rras	96	35.233
ENSKMAG00000001908	rab13	92	41.711	ENSKMAG00000011278	rab6bb	90	41.711
ENSKMAG00000001908	rab13	91	54.971	ENSKMAG00000001191	RAB15	83	53.714
ENSKMAG00000001908	rab13	84	43.671	ENSKMAG00000017487	rab14	78	43.114
ENSKMAG00000001908	rab13	98	43.684	ENSKMAG00000006082	-	87	43.684
ENSKMAG00000001908	rab13	84	44.304	ENSKMAG00000011301	-	78	43.713
ENSKMAG00000001908	rab13	86	33.721	ENSKMAG00000017097	rasl11a	70	33.526
ENSKMAG00000001908	rab13	92	34.831	ENSKMAG00000021039	si:dkey-13a21.4	74	34.831
ENSKMAG00000001908	rab13	91	57.310	ENSKMAG00000009856	zgc:171927	80	58.721
ENSKMAG00000001908	rab13	64	30.075	ENSKMAG00000016837	arfrp1	65	30.075
ENSKMAG00000001908	rab13	97	41.951	ENSKMAG00000015516	rab11al	95	41.951
ENSKMAG00000001908	rab13	93	43.017	ENSKMAG00000006593	rab33a	80	42.857
ENSKMAG00000001908	rab13	97	42.927	ENSKMAG00000011905	rab11a	95	42.927
ENSKMAG00000001908	rab13	88	39.053	ENSKMAG00000006812	RAB7A	86	38.547
ENSKMAG00000001908	rab13	98	52.041	ENSKMAG00000006810	rab1ba	97	52.041
ENSKMAG00000001908	rab13	92	37.629	ENSKMAG00000017662	rab9a	95	37.629
ENSKMAG00000001908	rab13	95	36.842	ENSKMAG00000014705	rab22a	97	36.842
ENSKMAG00000001908	rab13	94	40.642	ENSKMAG00000004945	rab25a	89	40.642
ENSKMAG00000001908	rab13	98	44.211	ENSKMAG00000006170	-	87	44.211
ENSKMAG00000001908	rab13	87	49.091	ENSKMAG00000020056	rab12	72	48.256

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001908	rab13	99	75.500	ENSG00000143545	RAB13	99	75.500	Homo_sapiens
ENSKMAG00000001908	rab13	91	94.152	ENSACIG00000008584	rab13	88	92.857	Amphilophus_citrinellus
ENSKMAG00000001908	rab13	99	76.000	ENSANAG00000030247	-	99	76.000	Aotus_nancymaae
ENSKMAG00000001908	rab13	100	86.634	ENSAMXG00000030712	rab13	100	86.634	Astyanax_mexicanus
ENSKMAG00000001908	rab13	99	75.000	ENSBTAG00000017604	RAB13	99	75.000	Bos_taurus
ENSKMAG00000001908	rab13	94	44.382	WBGene00019317	K02E10.1	81	44.382	Caenorhabditis_elegans
ENSKMAG00000001908	rab13	90	83.432	ENSCJAG00000009933	-	99	75.490	Callithrix_jacchus
ENSKMAG00000001908	rab13	99	75.000	ENSCHIG00000022271	-	99	75.000	Capra_hircus
ENSKMAG00000001908	rab13	99	75.500	ENSCPOG00000011491	-	99	75.500	Cavia_porcellus
ENSKMAG00000001908	rab13	99	75.500	ENSCCAG00000028502	-	99	75.500	Cebus_capucinus
ENSKMAG00000001908	rab13	99	75.500	ENSCATG00000041779	-	99	75.500	Cercocebus_atys
ENSKMAG00000001908	rab13	99	75.000	ENSCLAG00000006603	-	99	75.000	Chinchilla_lanigera
ENSKMAG00000001908	rab13	99	75.500	ENSCANG00000036573	-	99	75.500	Colobus_angolensis_palliatus
ENSKMAG00000001908	rab13	99	75.000	ENSCGRG00001021505	Rab13	99	75.000	Cricetulus_griseus_chok1gshd
ENSKMAG00000001908	rab13	99	75.000	ENSCGRG00000012126	Rab13	99	75.000	Cricetulus_griseus_crigri
ENSKMAG00000001908	rab13	100	89.000	ENSCSEG00000002358	rab13	100	89.000	Cynoglossus_semilaevis
ENSKMAG00000001908	rab13	100	88.500	ENSDARG00000034771	rab13	100	88.500	Danio_rerio
ENSKMAG00000001908	rab13	99	76.961	ENSDORG00000001591	Rab13	99	76.961	Dipodomys_ordii
ENSKMAG00000001908	rab13	97	77.419	ENSEASG00005000683	-	99	75.000	Equus_asinus_asinus
ENSKMAG00000001908	rab13	97	77.419	ENSECAG00000016551	RAB13	99	75.000	Equus_caballus
ENSKMAG00000001908	rab13	100	73.399	ENSEEUG00000001233	-	100	73.399	Erinaceus_europaeus
ENSKMAG00000001908	rab13	100	87.000	ENSELUG00000012801	rab13	100	87.000	Esox_lucius
ENSKMAG00000001908	rab13	99	74.000	ENSFCAG00000045269	-	99	74.000	Felis_catus
ENSKMAG00000001908	rab13	70	88.550	ENSFDAG00000014469	-	99	88.550	Fukomys_damarensis
ENSKMAG00000001908	rab13	100	90.500	ENSFHEG00000021221	rab13	97	94.915	Fundulus_heteroclitus
ENSKMAG00000001908	rab13	100	89.500	ENSGACG00000011925	rab13	99	89.500	Gasterosteus_aculeatus
ENSKMAG00000001908	rab13	97	80.220	ENSGAGG00000000742	-	100	79.104	Gopherus_agassizii
ENSKMAG00000001908	rab13	99	75.500	ENSGGOG00000023693	RAB13	99	75.500	Gorilla_gorilla
ENSKMAG00000001908	rab13	99	74.372	ENSHGLG00000008749	RAB13	99	74.372	Heterocephalus_glaber_female
ENSKMAG00000001908	rab13	99	74.372	ENSHGLG00100013608	RAB13	99	74.372	Heterocephalus_glaber_male
ENSKMAG00000001908	rab13	99	87.097	ENSHCOG00000007440	rab13	98	92.737	Hippocampus_comes
ENSKMAG00000001908	rab13	100	88.060	ENSIPUG00000003199	rab13	100	88.060	Ictalurus_punctatus
ENSKMAG00000001908	rab13	99	75.490	ENSSTOG00000011222	-	99	75.490	Ictidomys_tridecemlineatus
ENSKMAG00000001908	rab13	99	76.000	ENSJJAG00000010575	Rab13	99	76.000	Jaculus_jaculus
ENSKMAG00000001908	rab13	100	89.500	ENSLBEG00000026779	rab13	100	89.500	Labrus_bergylta
ENSKMAG00000001908	rab13	91	76.023	ENSLACG00000008103	-	99	77.966	Latimeria_chalumnae
ENSKMAG00000001908	rab13	99	75.500	ENSMFAG00000041018	RAB13	99	75.500	Macaca_fascicularis
ENSKMAG00000001908	rab13	99	75.500	ENSMNEG00000028951	-	99	75.500	Macaca_nemestrina
ENSKMAG00000001908	rab13	99	75.500	ENSMLEG00000042247	-	99	75.500	Mandrillus_leucophaeus
ENSKMAG00000001908	rab13	100	91.500	ENSMAMG00000014602	rab13	100	91.500	Mastacembelus_armatus
ENSKMAG00000001908	rab13	99	75.500	ENSMAUG00000015713	Rab13	99	75.500	Mesocricetus_auratus
ENSKMAG00000001908	rab13	99	76.382	ENSMICG00000010340	-	99	76.382	Microcebus_murinus
ENSKMAG00000001908	rab13	99	75.490	ENSMOCG00000021448	Rab13	99	75.490	Microtus_ochrogaster
ENSKMAG00000001908	rab13	99	76.500	ENSMODG00000017295	-	84	76.500	Monodelphis_domestica
ENSKMAG00000001908	rab13	99	73.786	MGP_CAROLIEiJ_G0025227	Rab13	99	73.786	Mus_caroli
ENSKMAG00000001908	rab13	99	73.786	ENSMUSG00000027935	Rab13	99	73.786	Mus_musculus
ENSKMAG00000001908	rab13	100	73.267	MGP_PahariEiJ_G0026671	Rab13	100	73.267	Mus_pahari
ENSKMAG00000001908	rab13	98	78.061	ENSNGAG00000010309	Rab13	96	78.061	Nannospalax_galili
ENSKMAG00000001908	rab13	100	90.000	ENSNBRG00000004124	rab13	100	90.000	Neolamprologus_brichardi
ENSKMAG00000001908	rab13	99	75.500	ENSNLEG00000028944	-	99	75.500	Nomascus_leucogenys
ENSKMAG00000001908	rab13	99	76.500	ENSMEUG00000009667	-	99	76.500	Notamacropus_eugenii
ENSKMAG00000001908	rab13	68	88.189	ENSODEG00000012634	-	100	88.189	Octodon_degus
ENSKMAG00000001908	rab13	99	75.248	ENSODEG00000010443	-	99	75.248	Octodon_degus
ENSKMAG00000001908	rab13	100	86.634	ENSONIG00000006340	rab13	100	86.634	Oreochromis_niloticus
ENSKMAG00000001908	rab13	90	83.432	ENSOCUG00000006286	-	100	82.584	Oryctolagus_cuniculus
ENSKMAG00000001908	rab13	100	92.500	ENSOMEG00000008210	rab13	100	92.500	Oryzias_melastigma
ENSKMAG00000001908	rab13	90	81.657	ENSOGAG00000016969	-	93	78.610	Otolemur_garnettii
ENSKMAG00000001908	rab13	99	75.500	ENSPPAG00000028435	-	99	75.500	Pan_paniscus
ENSKMAG00000001908	rab13	99	74.000	ENSPPRG00000008865	-	99	74.000	Panthera_pardus
ENSKMAG00000001908	rab13	99	75.500	ENSPTRG00000001370	RAB13	99	75.500	Pan_troglodytes
ENSKMAG00000001908	rab13	99	75.500	ENSPANG00000004479	-	99	75.500	Papio_anubis
ENSKMAG00000001908	rab13	100	89.000	ENSPMGG00000007680	rab13	100	89.000	Periophthalmus_magnuspinnatus
ENSKMAG00000001908	rab13	54	89.815	ENSPEMG00000017353	-	99	77.273	Peromyscus_maniculatus_bairdii
ENSKMAG00000001908	rab13	99	76.500	ENSPCIG00000029350	-	99	76.500	Phascolarctos_cinereus
ENSKMAG00000001908	rab13	90	94.083	ENSPLAG00000005832	RAB13	95	94.915	Poecilia_latipinna
ENSKMAG00000001908	rab13	100	91.500	ENSPREG00000017567	rab13	100	91.500	Poecilia_reticulata
ENSKMAG00000001908	rab13	99	75.500	ENSPPYG00000000790	-	99	75.500	Pongo_abelii
ENSKMAG00000001908	rab13	99	76.884	ENSPCOG00000012189	-	99	76.884	Propithecus_coquereli
ENSKMAG00000001908	rab13	88	84.242	ENSPVAG00000011095	-	91	79.781	Pteropus_vampyrus
ENSKMAG00000001908	rab13	100	86.702	ENSPNAG00000004189	rab13	95	93.855	Pygocentrus_nattereri
ENSKMAG00000001908	rab13	99	74.510	ENSRNOG00000016733	Rab13	99	74.510	Rattus_norvegicus
ENSKMAG00000001908	rab13	99	76.000	ENSRBIG00000008552	-	99	76.000	Rhinopithecus_bieti
ENSKMAG00000001908	rab13	99	76.000	ENSRROG00000036885	-	99	76.000	Rhinopithecus_roxellana
ENSKMAG00000001908	rab13	99	76.382	ENSSBOG00000020342	-	99	76.382	Saimiri_boliviensis_boliviensis
ENSKMAG00000001908	rab13	99	76.000	ENSSHAG00000011866	-	99	76.000	Sarcophilus_harrisii
ENSKMAG00000001908	rab13	99	75.000	ENSSSCG00000006564	-	99	75.000	Sus_scrofa
ENSKMAG00000001908	rab13	100	91.500	ENSTRUG00000024177	rab13	100	91.500	Takifugu_rubripes
ENSKMAG00000001908	rab13	99	77.500	ENSTBEG00000012734	-	99	77.500	Tupaia_belangeri
ENSKMAG00000001908	rab13	99	75.000	ENSTTRG00000011183	-	99	75.000	Tursiops_truncatus
ENSKMAG00000001908	rab13	66	81.452	ENSXETG00000020729	rab13	100	71.250	Xenopus_tropicalis
ENSKMAG00000001908	rab13	90	92.899	ENSXCOG00000019533	rab13	95	93.785	Xiphophorus_couchianus