EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000001940 (Gene tree)
Gene ID: 108238763
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 21973 bases
Position: chrLWHD01000057.1:2710880-2732852
Accession: 108238763
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000002664	CPSF_A	PF03178.15	4.4e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000002717	-	3684	XM_017421059	ENSKMAP00000002664	1227 (aa)	XP_017276548	-

Gene Model

Click here to download ENSKMAG00000001940's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000001940's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000001940	cpsf1	99	85.893	ENSG00000071894	CPSF1	91	85.893	Homo_sapiens
ENSKMAG00000001940	cpsf1	99	94.357	ENSAPOG00000019621	cpsf1	91	94.357	Acanthochromis_polyacanthus
ENSKMAG00000001940	cpsf1	96	79.624	ENSAMEG00000005557	CPSF1	90	79.624	Ailuropoda_melanoleuca
ENSKMAG00000001940	cpsf1	99	92.790	ENSACIG00000006112	cpsf1	91	92.790	Amphilophus_citrinellus
ENSKMAG00000001940	cpsf1	99	94.357	ENSAOCG00000007120	cpsf1	91	94.357	Amphiprion_ocellaris
ENSKMAG00000001940	cpsf1	99	94.357	ENSAPEG00000005755	cpsf1	91	94.357	Amphiprion_percula
ENSKMAG00000001940	cpsf1	99	93.730	ENSATEG00000011097	cpsf1	91	93.730	Anabas_testudineus
ENSKMAG00000001940	cpsf1	91	85.514	ENSACAG00000009655	CPSF1	91	85.514	Anolis_carolinensis
ENSKMAG00000001940	cpsf1	99	85.893	ENSANAG00000036514	CPSF1	91	85.893	Aotus_nancymaae
ENSKMAG00000001940	cpsf1	99	93.103	ENSACLG00000012231	cpsf1	91	93.103	Astatotilapia_calliptera
ENSKMAG00000001940	cpsf1	99	76.803	ENSAMXG00000008485	cpsf1	90	76.803	Astyanax_mexicanus
ENSKMAG00000001940	cpsf1	99	79.360	ENSBTAG00000008355	CPSF1	91	79.360	Bos_taurus
ENSKMAG00000001940	cpsf1	100	40.123	WBGene00022301	cpsf-1	98	35.455	Caenorhabditis_elegans
ENSKMAG00000001940	cpsf1	99	85.893	ENSCJAG00000021421	CPSF1	91	85.893	Callithrix_jacchus
ENSKMAG00000001940	cpsf1	96	85.580	ENSCAFG00000001600	CPSF1	91	85.580	Canis_familiaris
ENSKMAG00000001940	cpsf1	99	85.580	ENSCAFG00020020821	CPSF1	91	85.580	Canis_lupus_dingo
ENSKMAG00000001940	cpsf1	99	74.922	ENSCHIG00000015833	CPSF1	91	75.235	Capra_hircus
ENSKMAG00000001940	cpsf1	99	85.893	ENSTSYG00000028560	CPSF1	91	85.893	Carlito_syrichta
ENSKMAG00000001940	cpsf1	96	85.580	ENSCAPG00000014921	CPSF1	90	85.580	Cavia_aperea
ENSKMAG00000001940	cpsf1	99	85.580	ENSCPOG00000011448	CPSF1	91	85.580	Cavia_porcellus
ENSKMAG00000001940	cpsf1	99	85.893	ENSCCAG00000037658	CPSF1	91	85.893	Cebus_capucinus
ENSKMAG00000001940	cpsf1	99	85.893	ENSCATG00000037234	CPSF1	91	85.893	Cercocebus_atys
ENSKMAG00000001940	cpsf1	99	85.580	ENSCLAG00000012166	CPSF1	91	85.580	Chinchilla_lanigera
ENSKMAG00000001940	cpsf1	99	85.893	ENSCSAG00000008502	CPSF1	91	85.893	Chlorocebus_sabaeus
ENSKMAG00000001940	cpsf1	98	85.574	ENSCPBG00000018910	CPSF1	87	85.574	Chrysemys_picta_bellii
ENSKMAG00000001940	cpsf1	95	50.523	ENSCING00000000514	-	93	50.523	Ciona_intestinalis
ENSKMAG00000001940	cpsf1	99	52.978	ENSCSAVG00000002293	-	99	50.698	Ciona_savignyi
ENSKMAG00000001940	cpsf1	97	80.564	ENSCANG00000032760	CPSF1	100	76.389	Colobus_angolensis_palliatus
ENSKMAG00000001940	cpsf1	99	85.893	ENSCGRG00001016344	Cpsf1	91	85.893	Cricetulus_griseus_chok1gshd
ENSKMAG00000001940	cpsf1	99	85.893	ENSCGRG00000003118	Cpsf1	91	85.893	Cricetulus_griseus_crigri
ENSKMAG00000001940	cpsf1	99	89.969	ENSCSEG00000013464	cpsf1	91	89.969	Cynoglossus_semilaevis
ENSKMAG00000001940	cpsf1	82	94.044	ENSCVAG00000014059	cpsf1	100	82.870	Cyprinodon_variegatus
ENSKMAG00000001940	cpsf1	99	90.909	ENSDARG00000034178	cpsf1	91	90.909	Danio_rerio
ENSKMAG00000001940	cpsf1	51	73.140	ENSDNOG00000043654	CPSF1	77	61.572	Dasypus_novemcinctus
ENSKMAG00000001940	cpsf1	96	85.580	ENSDORG00000006278	Cpsf1	90	85.580	Dipodomys_ordii
ENSKMAG00000001940	cpsf1	99	51.757	FBgn0024698	Cpsf160	90	51.757	Drosophila_melanogaster
ENSKMAG00000001940	cpsf1	86	79.866	ENSETEG00000006022	CPSF1	82	79.866	Echinops_telfairi
ENSKMAG00000001940	cpsf1	99	85.580	ENSEASG00005010774	CPSF1	91	85.580	Equus_asinus_asinus
ENSKMAG00000001940	cpsf1	99	85.580	ENSECAG00000022209	CPSF1	91	85.580	Equus_caballus
ENSKMAG00000001940	cpsf1	99	85.580	ENSEEUG00000000471	CPSF1	91	85.580	Erinaceus_europaeus
ENSKMAG00000001940	cpsf1	100	83.573	ENSELUG00000012271	cpsf1	93	83.573	Esox_lucius
ENSKMAG00000001940	cpsf1	99	85.580	ENSFDAG00000016060	CPSF1	91	85.580	Fukomys_damarensis
ENSKMAG00000001940	cpsf1	99	94.044	ENSFHEG00000016801	cpsf1	91	94.044	Fundulus_heteroclitus
ENSKMAG00000001940	cpsf1	99	89.342	ENSGMOG00000000796	cpsf1	91	89.342	Gadus_morhua
ENSKMAG00000001940	cpsf1	95	84.264	ENSGAFG00000018890	cpsf1	90	84.264	Gambusia_affinis
ENSKMAG00000001940	cpsf1	99	92.790	ENSGACG00000008703	cpsf1	91	92.790	Gasterosteus_aculeatus
ENSKMAG00000001940	cpsf1	100	75.319	ENSGAGG00000004276	CPSF1	87	92.466	Gopherus_agassizii
ENSKMAG00000001940	cpsf1	99	85.893	ENSGGOG00000016185	CPSF1	91	85.893	Gorilla_gorilla
ENSKMAG00000001940	cpsf1	99	93.103	ENSHBUG00000018900	cpsf1	91	93.103	Haplochromis_burtoni
ENSKMAG00000001940	cpsf1	99	85.580	ENSHGLG00000016139	CPSF1	91	85.580	Heterocephalus_glaber_female
ENSKMAG00000001940	cpsf1	99	85.580	ENSHGLG00100009750	CPSF1	91	85.580	Heterocephalus_glaber_male
ENSKMAG00000001940	cpsf1	99	92.163	ENSHCOG00000018509	cpsf1	91	92.163	Hippocampus_comes
ENSKMAG00000001940	cpsf1	99	78.438	ENSIPUG00000011259	cpsf1	91	78.438	Ictalurus_punctatus
ENSKMAG00000001940	cpsf1	96	85.580	ENSSTOG00000009957	CPSF1	90	85.580	Ictidomys_tridecemlineatus
ENSKMAG00000001940	cpsf1	99	85.893	ENSJJAG00000023002	Cpsf1	91	85.893	Jaculus_jaculus
ENSKMAG00000001940	cpsf1	99	92.476	ENSLBEG00000003601	cpsf1	91	92.476	Labrus_bergylta
ENSKMAG00000001940	cpsf1	89	88.088	ENSLACG00000000233	CPSF1	81	88.088	Latimeria_chalumnae
ENSKMAG00000001940	cpsf1	99	89.097	ENSLOCG00000008484	cpsf1	91	89.097	Lepisosteus_oculatus
ENSKMAG00000001940	cpsf1	96	85.580	ENSLAFG00000022601	CPSF1	91	85.580	Loxodonta_africana
ENSKMAG00000001940	cpsf1	99	85.893	ENSMFAG00000037013	CPSF1	91	85.893	Macaca_fascicularis
ENSKMAG00000001940	cpsf1	99	85.893	ENSMMUG00000007380	CPSF1	91	85.893	Macaca_mulatta
ENSKMAG00000001940	cpsf1	96	85.893	ENSMNEG00000043564	CPSF1	100	75.926	Macaca_nemestrina
ENSKMAG00000001940	cpsf1	99	85.893	ENSMLEG00000043010	CPSF1	91	85.893	Mandrillus_leucophaeus
ENSKMAG00000001940	cpsf1	99	94.984	ENSMAMG00000003803	cpsf1	91	94.984	Mastacembelus_armatus
ENSKMAG00000001940	cpsf1	99	93.103	ENSMZEG00005001168	cpsf1	91	93.103	Maylandia_zebra
ENSKMAG00000001940	cpsf1	99	85.893	ENSMAUG00000003601	Cpsf1	91	85.893	Mesocricetus_auratus
ENSKMAG00000001940	cpsf1	99	85.580	ENSMICG00000015767	CPSF1	91	85.580	Microcebus_murinus
ENSKMAG00000001940	cpsf1	99	85.893	ENSMOCG00000022758	Cpsf1	91	85.893	Microtus_ochrogaster
ENSKMAG00000001940	cpsf1	99	94.671	ENSMMOG00000021245	cpsf1	91	94.671	Mola_mola
ENSKMAG00000001940	cpsf1	99	85.580	ENSMODG00000010755	CPSF1	91	85.580	Monodelphis_domestica
ENSKMAG00000001940	cpsf1	99	94.357	ENSMALG00000020545	cpsf1	91	94.357	Monopterus_albus
ENSKMAG00000001940	cpsf1	99	85.893	MGP_CAROLIEiJ_G0019936	Cpsf1	91	85.893	Mus_caroli
ENSKMAG00000001940	cpsf1	99	85.893	ENSMUSG00000034022	Cpsf1	91	85.893	Mus_musculus
ENSKMAG00000001940	cpsf1	99	85.893	MGP_PahariEiJ_G0019946	Cpsf1	91	85.893	Mus_pahari
ENSKMAG00000001940	cpsf1	99	85.893	MGP_SPRETEiJ_G0020839	Cpsf1	91	85.893	Mus_spretus
ENSKMAG00000001940	cpsf1	92	84.590	ENSMPUG00000006419	CPSF1	84	84.590	Mustela_putorius_furo
ENSKMAG00000001940	cpsf1	99	85.893	ENSNGAG00000022460	Cpsf1	91	85.893	Nannospalax_galili
ENSKMAG00000001940	cpsf1	99	93.103	ENSNBRG00000000813	cpsf1	90	93.103	Neolamprologus_brichardi
ENSKMAG00000001940	cpsf1	92	64.474	ENSNLEG00000010633	-	100	75.926	Nomascus_leucogenys
ENSKMAG00000001940	cpsf1	84	82.558	ENSMEUG00000014922	CPSF1	80	82.558	Notamacropus_eugenii
ENSKMAG00000001940	cpsf1	55	92.857	ENSOPRG00000004693	-	61	92.857	Ochotona_princeps
ENSKMAG00000001940	cpsf1	99	85.580	ENSODEG00000013995	CPSF1	91	85.580	Octodon_degus
ENSKMAG00000001940	cpsf1	99	92.790	ENSONIG00000007676	cpsf1	91	92.790	Oreochromis_niloticus
ENSKMAG00000001940	cpsf1	61	76.429	ENSOANG00000010716	CPSF1	89	76.429	Ornithorhynchus_anatinus
ENSKMAG00000001940	cpsf1	99	94.044	ENSORLG00000013544	cpsf1	91	94.044	Oryzias_latipes
ENSKMAG00000001940	cpsf1	99	94.044	ENSORLG00020021693	cpsf1	91	94.044	Oryzias_latipes_hni
ENSKMAG00000001940	cpsf1	99	94.044	ENSORLG00015009979	cpsf1	91	94.044	Oryzias_latipes_hsok
ENSKMAG00000001940	cpsf1	99	93.417	ENSOMEG00000011849	cpsf1	91	93.417	Oryzias_melastigma
ENSKMAG00000001940	cpsf1	99	85.580	ENSOGAG00000000315	CPSF1	91	85.580	Otolemur_garnettii
ENSKMAG00000001940	cpsf1	99	85.893	ENSPPAG00000019280	CPSF1	100	77.376	Pan_paniscus
ENSKMAG00000001940	cpsf1	99	85.893	ENSPTRG00000051253	-	100	77.376	Pan_troglodytes
ENSKMAG00000001940	cpsf1	99	85.893	ENSPTRG00000049288	-	100	77.376	Pan_troglodytes
ENSKMAG00000001940	cpsf1	96	85.893	ENSPANG00000015005	CPSF1	100	75.926	Papio_anubis
ENSKMAG00000001940	cpsf1	99	90.909	ENSPKIG00000002582	cpsf1	91	90.909	Paramormyrops_kingsleyae
ENSKMAG00000001940	cpsf1	99	85.580	ENSPCIG00000009035	CPSF1	91	85.580	Phascolarctos_cinereus
ENSKMAG00000001940	cpsf1	99	94.984	ENSPFOG00000012870	cpsf1	91	94.984	Poecilia_formosa
ENSKMAG00000001940	cpsf1	99	94.671	ENSPREG00000016307	cpsf1	91	94.671	Poecilia_reticulata
ENSKMAG00000001940	cpsf1	99	84.013	ENSPPYG00000018973	CPSF1	93	84.013	Pongo_abelii
ENSKMAG00000001940	cpsf1	96	82.759	ENSPCAG00000011541	CPSF1	90	82.759	Procavia_capensis
ENSKMAG00000001940	cpsf1	99	71.562	ENSPCOG00000020001	CPSF1	100	75.926	Propithecus_coquereli
ENSKMAG00000001940	cpsf1	96	85.484	ENSPVAG00000006761	CPSF1	88	85.484	Pteropus_vampyrus
ENSKMAG00000001940	cpsf1	99	93.103	ENSPNYG00000004906	cpsf1	91	93.103	Pundamilia_nyererei
ENSKMAG00000001940	cpsf1	99	82.132	ENSPNAG00000024395	cpsf1	91	82.132	Pygocentrus_nattereri
ENSKMAG00000001940	cpsf1	99	85.893	ENSRNOG00000030705	Cpsf1	91	85.893	Rattus_norvegicus
ENSKMAG00000001940	cpsf1	99	85.893	ENSRBIG00000044907	CPSF1	91	85.893	Rhinopithecus_bieti
ENSKMAG00000001940	cpsf1	99	85.893	ENSRROG00000044861	CPSF1	91	85.893	Rhinopithecus_roxellana
ENSKMAG00000001940	cpsf1	96	85.893	ENSSBOG00000027177	CPSF1	90	85.893	Saimiri_boliviensis_boliviensis
ENSKMAG00000001940	cpsf1	99	85.266	ENSSHAG00000006500	CPSF1	91	85.266	Sarcophilus_harrisii
ENSKMAG00000001940	cpsf1	99	91.536	ENSSFOG00015004606	cpsf1	91	91.536	Scleropages_formosus
ENSKMAG00000001940	cpsf1	99	94.044	ENSSMAG00000020547	cpsf1	91	94.044	Scophthalmus_maximus
ENSKMAG00000001940	cpsf1	99	93.730	ENSSDUG00000001100	cpsf1	91	93.730	Seriola_dumerili
ENSKMAG00000001940	cpsf1	99	93.730	ENSSLDG00000003619	cpsf1	91	93.730	Seriola_lalandi_dorsalis
ENSKMAG00000001940	cpsf1	87	84.615	ENSSARG00000003643	CPSF1	82	84.615	Sorex_araneus
ENSKMAG00000001940	cpsf1	95	86.520	ENSSPUG00000014396	CPSF1	91	86.520	Sphenodon_punctatus
ENSKMAG00000001940	cpsf1	99	93.730	ENSSPAG00000005349	cpsf1	91	93.730	Stegastes_partitus
ENSKMAG00000001940	cpsf1	99	85.893	ENSSSCG00000005906	CPSF1	91	85.893	Sus_scrofa
ENSKMAG00000001940	cpsf1	95	91.850	ENSTRUG00000013134	cpsf1	91	91.850	Takifugu_rubripes
ENSKMAG00000001940	cpsf1	99	91.277	ENSTNIG00000014027	cpsf1	91	91.277	Tetraodon_nigroviridis
ENSKMAG00000001940	cpsf1	73	86.316	ENSTBEG00000001756	CPSF1	76	86.316	Tupaia_belangeri
ENSKMAG00000001940	cpsf1	89	85.266	ENSTTRG00000001937	CPSF1	81	85.266	Tursiops_truncatus
ENSKMAG00000001940	cpsf1	96	85.580	ENSUAMG00000006476	CPSF1	89	85.580	Ursus_americanus
ENSKMAG00000001940	cpsf1	99	94.671	ENSXCOG00000003608	cpsf1	91	94.671	Xiphophorus_couchianus
ENSKMAG00000001940	cpsf1	99	94.984	ENSXMAG00000005798	cpsf1	91	94.984	Xiphophorus_maculatus