EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000002282 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 27391 bases
Position: chrLWHD01000143.1:722463-749853
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000003159	ResIII	PF04851.15	8.6e-12	1	1
ENSKMAP00000003159	DEAD	PF00270.29	8.9e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000003222	-	2910	-	ENSKMAP00000003159	969 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000002282's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000002282's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000002282	hfm1	77	31.295	ENSKMAG00000003665	snrnp200	64	31.295
ENSKMAG00000002282	hfm1	67	32.243	ENSKMAG00000003953	ascc3	57	32.243

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000002282	hfm1	90	63.707	ENSG00000162669	HFM1	62	63.636	Homo_sapiens
ENSKMAG00000002282	hfm1	84	82.339	ENSAPOG00000005304	hfm1	92	82.339	Acanthochromis_polyacanthus
ENSKMAG00000002282	hfm1	90	63.193	ENSAMEG00000000432	HFM1	62	63.193	Ailuropoda_melanoleuca
ENSKMAG00000002282	hfm1	91	80.722	ENSACIG00000021553	hfm1	80	80.722	Amphilophus_citrinellus
ENSKMAG00000002282	hfm1	84	83.843	ENSAOCG00000022839	hfm1	96	85.232	Amphiprion_ocellaris
ENSKMAG00000002282	hfm1	84	83.843	ENSAPEG00000014316	hfm1	96	85.357	Amphiprion_percula
ENSKMAG00000002282	hfm1	91	79.912	ENSATEG00000019181	hfm1	74	79.484	Anabas_testudineus
ENSKMAG00000002282	hfm1	90	62.942	ENSAPLG00000013639	HFM1	62	62.942	Anas_platyrhynchos
ENSKMAG00000002282	hfm1	91	63.300	ENSANAG00000029513	HFM1	62	63.300	Aotus_nancymaae
ENSKMAG00000002282	hfm1	91	78.579	ENSACLG00000009033	hfm1	94	81.640	Astatotilapia_calliptera
ENSKMAG00000002282	hfm1	91	70.350	ENSAMXG00000006108	hfm1	63	70.350	Astyanax_mexicanus
ENSKMAG00000002282	hfm1	91	62.639	ENSBTAG00000020856	HFM1	62	62.639	Bos_taurus
ENSKMAG00000002282	hfm1	90	63.152	ENSCJAG00000001843	HFM1	62	63.082	Callithrix_jacchus
ENSKMAG00000002282	hfm1	99	58.930	ENSCAFG00000020187	HFM1	62	62.930	Canis_familiaris
ENSKMAG00000002282	hfm1	90	63.606	ENSTSYG00000014250	HFM1	62	63.536	Carlito_syrichta
ENSKMAG00000002282	hfm1	91	61.973	ENSCPOG00000007421	HFM1	64	61.973	Cavia_porcellus
ENSKMAG00000002282	hfm1	90	63.041	ENSCCAG00000033206	HFM1	62	63.041	Cebus_capucinus
ENSKMAG00000002282	hfm1	90	63.374	ENSCATG00000030987	HFM1	62	63.374	Cercocebus_atys
ENSKMAG00000002282	hfm1	91	62.111	ENSCLAG00000005173	HFM1	60	62.111	Chinchilla_lanigera
ENSKMAG00000002282	hfm1	72	52.348	ENSCSAVG00000005094	-	100	52.348	Ciona_savignyi
ENSKMAG00000002282	hfm1	88	59.209	ENSCGRG00001016995	Hfm1	62	59.209	Cricetulus_griseus_chok1gshd
ENSKMAG00000002282	hfm1	90	61.462	ENSCGRG00000017181	Hfm1	62	61.394	Cricetulus_griseus_crigri
ENSKMAG00000002282	hfm1	92	74.307	ENSCSEG00000017659	hfm1	85	74.946	Cynoglossus_semilaevis
ENSKMAG00000002282	hfm1	73	84.358	ENSCVAG00000005075	hfm1	86	84.358	Cyprinodon_variegatus
ENSKMAG00000002282	hfm1	85	72.384	ENSDARG00000104288	hfm1	74	72.384	Danio_rerio
ENSKMAG00000002282	hfm1	99	57.831	ENSDNOG00000004776	HFM1	60	62.542	Dasypus_novemcinctus
ENSKMAG00000002282	hfm1	91	61.087	ENSDORG00000014661	Hfm1	62	61.087	Dipodomys_ordii
ENSKMAG00000002282	hfm1	89	63.291	ENSEASG00005015424	HFM1	84	63.291	Equus_asinus_asinus
ENSKMAG00000002282	hfm1	91	62.749	ENSECAG00000024039	HFM1	60	62.749	Equus_caballus
ENSKMAG00000002282	hfm1	90	72.907	ENSELUG00000018944	hfm1	96	72.907	Esox_lucius
ENSKMAG00000002282	hfm1	90	62.708	ENSFCAG00000029116	HFM1	62	62.708	Felis_catus
ENSKMAG00000002282	hfm1	90	63.616	ENSFALG00000001781	HFM1	62	63.616	Ficedula_albicollis
ENSKMAG00000002282	hfm1	90	62.348	ENSFDAG00000020816	HFM1	60	62.279	Fukomys_damarensis
ENSKMAG00000002282	hfm1	90	69.069	ENSGMOG00000017436	hfm1	93	69.512	Gadus_morhua
ENSKMAG00000002282	hfm1	91	81.561	ENSGAFG00000018093	hfm1	91	82.987	Gambusia_affinis
ENSKMAG00000002282	hfm1	90	74.668	ENSGACG00000015686	hfm1	93	74.668	Gasterosteus_aculeatus
ENSKMAG00000002282	hfm1	91	63.747	ENSGGOG00000038524	HFM1	62	63.747	Gorilla_gorilla
ENSKMAG00000002282	hfm1	91	80.000	ENSHBUG00000007309	hfm1	83	80.000	Haplochromis_burtoni
ENSKMAG00000002282	hfm1	84	78.345	ENSHCOG00000019632	hfm1	97	78.345	Hippocampus_comes
ENSKMAG00000002282	hfm1	91	70.121	ENSIPUG00000017020	hfm1	89	73.072	Ictalurus_punctatus
ENSKMAG00000002282	hfm1	90	61.154	ENSJJAG00000017198	Hfm1	64	61.154	Jaculus_jaculus
ENSKMAG00000002282	hfm1	92	78.420	ENSLBEG00000006759	hfm1	94	82.051	Labrus_bergylta
ENSKMAG00000002282	hfm1	90	64.764	ENSLACG00000010698	HFM1	85	64.654	Latimeria_chalumnae
ENSKMAG00000002282	hfm1	90	68.097	ENSLOCG00000004931	hfm1	83	68.097	Lepisosteus_oculatus
ENSKMAG00000002282	hfm1	69	70.000	ENSLAFG00000015903	-	90	70.000	Loxodonta_africana
ENSKMAG00000002282	hfm1	90	60.797	ENSMFAG00000003649	HFM1	62	60.730	Macaca_fascicularis
ENSKMAG00000002282	hfm1	90	63.596	ENSMMUG00000006819	HFM1	62	63.525	Macaca_mulatta
ENSKMAG00000002282	hfm1	92	78.062	ENSMAMG00000004623	hfm1	97	81.655	Mastacembelus_armatus
ENSKMAG00000002282	hfm1	91	78.579	ENSMZEG00005004679	hfm1	94	81.640	Maylandia_zebra
ENSKMAG00000002282	hfm1	79	64.987	ENSMGAG00000008437	HFM1	94	65.879	Meleagris_gallopavo
ENSKMAG00000002282	hfm1	91	61.197	ENSMAUG00000018858	Hfm1	62	61.197	Mesocricetus_auratus
ENSKMAG00000002282	hfm1	90	63.274	ENSMICG00000037935	HFM1	62	63.274	Microcebus_murinus
ENSKMAG00000002282	hfm1	90	61.641	ENSMOCG00000014812	Hfm1	62	61.641	Microtus_ochrogaster
ENSKMAG00000002282	hfm1	91	80.774	ENSMMOG00000006148	hfm1	94	80.774	Mola_mola
ENSKMAG00000002282	hfm1	85	84.135	ENSMALG00000002401	hfm1	94	82.310	Monopterus_albus
ENSKMAG00000002282	hfm1	82	71.186	MGP_CAROLIEiJ_G0027496	Hfm1	58	71.186	Mus_caroli
ENSKMAG00000002282	hfm1	91	61.019	ENSMUSG00000043410	Hfm1	62	61.019	Mus_musculus
ENSKMAG00000002282	hfm1	91	61.240	MGP_PahariEiJ_G0017268	Hfm1	62	61.240	Mus_pahari
ENSKMAG00000002282	hfm1	91	61.154	MGP_SPRETEiJ_G0028495	Hfm1	62	61.154	Mus_spretus
ENSKMAG00000002282	hfm1	91	62.431	ENSMPUG00000004594	HFM1	60	62.431	Mustela_putorius_furo
ENSKMAG00000002282	hfm1	91	62.639	ENSMLUG00000010200	HFM1	62	62.639	Myotis_lucifugus
ENSKMAG00000002282	hfm1	91	74.972	ENSNBRG00000002910	hfm1	96	81.640	Neolamprologus_brichardi
ENSKMAG00000002282	hfm1	90	62.486	ENSNLEG00000010285	HFM1	62	62.417	Nomascus_leucogenys
ENSKMAG00000002282	hfm1	81	58.725	ENSMEUG00000015788	HFM1	57	58.725	Notamacropus_eugenii
ENSKMAG00000002282	hfm1	90	58.804	ENSOPRG00000013916	HFM1	60	59.091	Ochotona_princeps
ENSKMAG00000002282	hfm1	90	79.268	ENSONIG00000010590	hfm1	85	79.268	Oreochromis_niloticus
ENSKMAG00000002282	hfm1	84	81.127	ENSORLG00000026844	hfm1	100	81.127	Oryzias_latipes
ENSKMAG00000002282	hfm1	91	68.427	ENSORLG00020002951	hfm1	70	68.427	Oryzias_latipes_hni
ENSKMAG00000002282	hfm1	91	76.490	ENSOMEG00000016474	hfm1	62	76.490	Oryzias_melastigma
ENSKMAG00000002282	hfm1	90	62.721	ENSOGAG00000032369	HFM1	73	62.721	Otolemur_garnettii
ENSKMAG00000002282	hfm1	91	62.749	ENSOARG00000015812	HFM1	62	62.749	Ovis_aries
ENSKMAG00000002282	hfm1	90	63.929	ENSPPAG00000024582	HFM1	67	63.929	Pan_paniscus
ENSKMAG00000002282	hfm1	90	62.708	ENSPPRG00000003270	HFM1	62	62.708	Panthera_pardus
ENSKMAG00000002282	hfm1	90	62.708	ENSPTIG00000018881	HFM1	62	62.708	Panthera_tigris_altaica
ENSKMAG00000002282	hfm1	90	63.929	ENSPTRG00000000948	HFM1	62	63.858	Pan_troglodytes
ENSKMAG00000002282	hfm1	90	63.485	ENSPANG00000009838	HFM1	62	63.415	Papio_anubis
ENSKMAG00000002282	hfm1	91	68.973	ENSPKIG00000003810	hfm1	94	71.149	Paramormyrops_kingsleyae
ENSKMAG00000002282	hfm1	84	76.838	ENSPMGG00000011059	hfm1	98	76.838	Periophthalmus_magnuspinnatus
ENSKMAG00000002282	hfm1	91	61.615	ENSPEMG00000022852	Hfm1	62	61.615	Peromyscus_maniculatus_bairdii
ENSKMAG00000002282	hfm1	91	63.546	ENSPCIG00000014233	HFM1	60	63.546	Phascolarctos_cinereus
ENSKMAG00000002282	hfm1	90	79.669	ENSPFOG00000017194	hfm1	85	79.669	Poecilia_formosa
ENSKMAG00000002282	hfm1	91	80.089	ENSPLAG00000000571	hfm1	81	80.089	Poecilia_latipinna
ENSKMAG00000002282	hfm1	91	80.111	ENSPMEG00000019475	hfm1	82	80.111	Poecilia_mexicana
ENSKMAG00000002282	hfm1	91	79.075	ENSPREG00000007803	hfm1	91	82.966	Poecilia_reticulata
ENSKMAG00000002282	hfm1	90	63.818	ENSPPYG00000001163	HFM1	62	63.747	Pongo_abelii
ENSKMAG00000002282	hfm1	90	57.475	ENSPVAG00000009713	HFM1	63	57.412	Pteropus_vampyrus
ENSKMAG00000002282	hfm1	91	78.354	ENSPNYG00000001795	hfm1	94	81.518	Pundamilia_nyererei
ENSKMAG00000002282	hfm1	84	73.716	ENSPNAG00000010865	hfm1	81	73.716	Pygocentrus_nattereri
ENSKMAG00000002282	hfm1	91	61.191	ENSRNOG00000023299	Hfm1	62	61.191	Rattus_norvegicus
ENSKMAG00000002282	hfm1	90	63.596	ENSRROG00000045569	HFM1	62	63.525	Rhinopithecus_roxellana
ENSKMAG00000002282	hfm1	91	63.082	ENSSBOG00000027456	HFM1	63	63.082	Saimiri_boliviensis_boliviensis
ENSKMAG00000002282	hfm1	60	69.426	ENSSHAG00000014616	-	67	69.426	Sarcophilus_harrisii
ENSKMAG00000002282	hfm1	91	69.239	ENSSFOG00015020129	hfm1	61	69.239	Scleropages_formosus
ENSKMAG00000002282	hfm1	90	80.692	ENSSMAG00000006907	hfm1	86	80.692	Scophthalmus_maximus
ENSKMAG00000002282	hfm1	85	83.353	ENSSDUG00000011424	hfm1	93	83.353	Seriola_dumerili
ENSKMAG00000002282	hfm1	85	83.333	ENSSLDG00000016386	hfm1	92	83.373	Seriola_lalandi_dorsalis
ENSKMAG00000002282	hfm1	84	83.721	ENSSPAG00000001023	hfm1	92	83.721	Stegastes_partitus
ENSKMAG00000002282	hfm1	91	62.171	ENSSSCG00000006912	HFM1	65	62.171	Sus_scrofa
ENSKMAG00000002282	hfm1	90	63.053	ENSTGUG00000006172	HFM1	93	63.053	Taeniopygia_guttata
ENSKMAG00000002282	hfm1	91	62.775	ENSTTRG00000013933	HFM1	63	62.775	Tursiops_truncatus
ENSKMAG00000002282	hfm1	90	60.908	ENSVPAG00000011331	HFM1	62	60.908	Vicugna_pacos
ENSKMAG00000002282	hfm1	89	63.751	ENSVVUG00000020760	HFM1	84	63.751	Vulpes_vulpes
ENSKMAG00000002282	hfm1	84	83.456	ENSXMAG00000004178	hfm1	90	83.456	Xiphophorus_maculatus