EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000002315 (Gene tree)
Gene ID: 108234789
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 52940 bases
Position: chrLWHD01000029.1:1557144-1610083
Accession: 108234789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000003119	CPSF_A	PF03178.15	1.1e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000003182	-	3343	XM_017414249	ENSKMAP00000003119	1075 (aa)	XP_017269738	-

Gene Model

Click here to download ENSKMAG00000002315's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03420	Nucleotide excision repair	KEGG
kmr04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000002315's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000002315	ddb1	99	91.333	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSKMAG00000002315	ddb1	99	98.229	ENSAPOG00000005036	ddb1	99	98.469	Acanthochromis_polyacanthus
ENSKMAG00000002315	ddb1	99	91.333	ENSAMEG00000016518	DDB1	94	91.333	Ailuropoda_melanoleuca
ENSKMAG00000002315	ddb1	91	98.673	ENSACIG00000020624	ddb1	99	98.673	Amphilophus_citrinellus
ENSKMAG00000002315	ddb1	99	98.136	ENSAOCG00000003066	ddb1	94	98.136	Amphiprion_ocellaris
ENSKMAG00000002315	ddb1	100	98.326	ENSAPEG00000000092	ddb1	99	98.326	Amphiprion_percula
ENSKMAG00000002315	ddb1	99	98.696	ENSATEG00000020571	ddb1	97	98.696	Anabas_testudineus
ENSKMAG00000002315	ddb1	99	89.991	ENSAPLG00000007174	DDB1	93	89.991	Anas_platyrhynchos
ENSKMAG00000002315	ddb1	99	90.401	ENSACAG00000017758	DDB1	94	90.401	Anolis_carolinensis
ENSKMAG00000002315	ddb1	99	91.333	ENSANAG00000021878	DDB1	94	91.333	Aotus_nancymaae
ENSKMAG00000002315	ddb1	99	98.043	ENSACLG00000012401	ddb1	99	97.763	Astatotilapia_calliptera
ENSKMAG00000002315	ddb1	57	30.464	ENSAMXG00000008485	cpsf1	52	30.464	Astyanax_mexicanus
ENSKMAG00000002315	ddb1	99	91.240	ENSBTAG00000021569	DDB1	88	91.240	Bos_taurus
ENSKMAG00000002315	ddb1	99	37.205	WBGene00010890	ddb-1	94	37.205	Caenorhabditis_elegans
ENSKMAG00000002315	ddb1	99	91.333	ENSCJAG00000019319	DDB1	94	91.333	Callithrix_jacchus
ENSKMAG00000002315	ddb1	99	91.527	ENSCAFG00000016264	DDB1	99	91.527	Canis_familiaris
ENSKMAG00000002315	ddb1	99	91.527	ENSCAFG00020012722	DDB1	99	91.527	Canis_lupus_dingo
ENSKMAG00000002315	ddb1	99	91.240	ENSCHIG00000014969	DDB1	94	91.240	Capra_hircus
ENSKMAG00000002315	ddb1	99	90.960	ENSTSYG00000008027	DDB1	94	90.960	Carlito_syrichta
ENSKMAG00000002315	ddb1	98	91.065	ENSCAPG00000010786	DDB1	94	91.065	Cavia_aperea
ENSKMAG00000002315	ddb1	99	91.053	ENSCPOG00000009956	DDB1	94	91.053	Cavia_porcellus
ENSKMAG00000002315	ddb1	99	91.333	ENSCCAG00000035883	DDB1	94	91.333	Cebus_capucinus
ENSKMAG00000002315	ddb1	99	89.362	ENSCATG00000044495	DDB1	94	89.362	Cercocebus_atys
ENSKMAG00000002315	ddb1	99	91.146	ENSCLAG00000004126	DDB1	94	91.146	Chinchilla_lanigera
ENSKMAG00000002315	ddb1	99	91.333	ENSCSAG00000006392	DDB1	94	91.333	Chlorocebus_sabaeus
ENSKMAG00000002315	ddb1	89	83.811	ENSCHOG00000011377	DDB1	86	83.811	Choloepus_hoffmanni
ENSKMAG00000002315	ddb1	99	90.774	ENSCPBG00000017728	DDB1	94	90.774	Chrysemys_picta_bellii
ENSKMAG00000002315	ddb1	99	61.275	ENSCING00000007437	-	94	61.275	Ciona_intestinalis
ENSKMAG00000002315	ddb1	93	60.413	ENSCSAVG00000004783	-	100	60.166	Ciona_savignyi
ENSKMAG00000002315	ddb1	99	91.333	ENSCANG00000019948	DDB1	94	91.333	Colobus_angolensis_palliatus
ENSKMAG00000002315	ddb1	99	91.333	ENSCGRG00001016599	Ddb1	98	90.392	Cricetulus_griseus_chok1gshd
ENSKMAG00000002315	ddb1	99	91.333	ENSCGRG00000013427	Ddb1	94	91.333	Cricetulus_griseus_crigri
ENSKMAG00000002315	ddb1	99	97.644	ENSCSEG00000012499	ddb1	99	96.053	Cynoglossus_semilaevis
ENSKMAG00000002315	ddb1	100	98.140	ENSCVAG00000019531	ddb1	99	98.140	Cyprinodon_variegatus
ENSKMAG00000002315	ddb1	99	91.791	ENSDARG00000074431	ddb1	94	91.791	Danio_rerio
ENSKMAG00000002315	ddb1	99	91.527	ENSDNOG00000014884	DDB1	97	91.527	Dasypus_novemcinctus
ENSKMAG00000002315	ddb1	83	95.455	ENSDORG00000000127	Ddb1	93	95.455	Dipodomys_ordii
ENSKMAG00000002315	ddb1	99	60.668	FBgn0260962	pic	94	60.668	Drosophila_melanogaster
ENSKMAG00000002315	ddb1	76	30.065	FBgn0024698	Cpsf160	63	30.065	Drosophila_melanogaster
ENSKMAG00000002315	ddb1	68	95.276	ENSETEG00000001053	-	64	95.276	Echinops_telfairi
ENSKMAG00000002315	ddb1	83	84.589	ENSEBUG00000014593	ddb1	97	84.589	Eptatretus_burgeri
ENSKMAG00000002315	ddb1	99	91.333	ENSEASG00005008184	DDB1	94	91.333	Equus_asinus_asinus
ENSKMAG00000002315	ddb1	99	91.333	ENSECAG00000012136	DDB1	94	91.333	Equus_caballus
ENSKMAG00000002315	ddb1	90	87.037	ENSEEUG00000003194	DDB1	85	87.037	Erinaceus_europaeus
ENSKMAG00000002315	ddb1	99	96.365	ENSELUG00000023868	ddb1	94	96.365	Esox_lucius
ENSKMAG00000002315	ddb1	99	91.333	ENSFCAG00000029716	DDB1	94	91.333	Felis_catus
ENSKMAG00000002315	ddb1	99	90.689	ENSFALG00000011981	DDB1	94	90.689	Ficedula_albicollis
ENSKMAG00000002315	ddb1	99	91.146	ENSFDAG00000005128	DDB1	94	91.146	Fukomys_damarensis
ENSKMAG00000002315	ddb1	89	98.370	ENSFHEG00000022133	ddb1	93	98.370	Fundulus_heteroclitus
ENSKMAG00000002315	ddb1	84	97.659	ENSGMOG00000019386	ddb1	94	97.659	Gadus_morhua
ENSKMAG00000002315	ddb1	99	90.680	ENSGALG00000042333	DDB1	94	90.680	Gallus_gallus
ENSKMAG00000002315	ddb1	100	98.605	ENSGAFG00000013142	ddb1	99	98.605	Gambusia_affinis
ENSKMAG00000002315	ddb1	99	98.037	ENSGACG00000017182	ddb1	98	98.037	Gasterosteus_aculeatus
ENSKMAG00000002315	ddb1	95	90.560	ENSGAGG00000014124	DDB1	94	90.560	Gopherus_agassizii
ENSKMAG00000002315	ddb1	99	91.333	ENSGGOG00000004052	DDB1	94	91.333	Gorilla_gorilla
ENSKMAG00000002315	ddb1	99	98.043	ENSHBUG00000008873	ddb1	94	98.043	Haplochromis_burtoni
ENSKMAG00000002315	ddb1	99	91.146	ENSHGLG00000018430	DDB1	94	91.146	Heterocephalus_glaber_female
ENSKMAG00000002315	ddb1	99	90.121	ENSHGLG00100014475	DDB1	94	90.121	Heterocephalus_glaber_male
ENSKMAG00000002315	ddb1	100	97.767	ENSHCOG00000018670	ddb1	98	97.767	Hippocampus_comes
ENSKMAG00000002315	ddb1	100	96.000	ENSIPUG00000005612	DDB1	98	96.000	Ictalurus_punctatus
ENSKMAG00000002315	ddb1	99	91.240	ENSSTOG00000007552	DDB1	94	91.240	Ictidomys_tridecemlineatus
ENSKMAG00000002315	ddb1	99	91.240	ENSJJAG00000017769	Ddb1	94	91.240	Jaculus_jaculus
ENSKMAG00000002315	ddb1	89	98.647	ENSLBEG00000017065	ddb1	99	98.647	Labrus_bergylta
ENSKMAG00000002315	ddb1	99	90.680	ENSLACG00000017611	DDB1	97	90.512	Latimeria_chalumnae
ENSKMAG00000002315	ddb1	91	87.048	ENSLOCG00000000012	ddb1	93	87.048	Lepisosteus_oculatus
ENSKMAG00000002315	ddb1	99	91.146	ENSLAFG00000011513	DDB1	94	91.146	Loxodonta_africana
ENSKMAG00000002315	ddb1	99	91.333	ENSMFAG00000042035	DDB1	94	91.333	Macaca_fascicularis
ENSKMAG00000002315	ddb1	99	91.333	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSKMAG00000002315	ddb1	58	30.065	ENSMMUG00000007380	CPSF1	56	30.065	Macaca_mulatta
ENSKMAG00000002315	ddb1	99	91.333	ENSMNEG00000031559	DDB1	94	91.333	Macaca_nemestrina
ENSKMAG00000002315	ddb1	99	91.333	ENSMLEG00000044136	DDB1	98	89.963	Mandrillus_leucophaeus
ENSKMAG00000002315	ddb1	99	98.602	ENSMAMG00000014372	ddb1	94	98.602	Mastacembelus_armatus
ENSKMAG00000002315	ddb1	99	97.950	ENSMZEG00005013835	ddb1	94	97.950	Maylandia_zebra
ENSKMAG00000002315	ddb1	93	90.339	ENSMGAG00000004990	DDB1	93	90.339	Meleagris_gallopavo
ENSKMAG00000002315	ddb1	99	91.333	ENSMAUG00000012926	Ddb1	94	91.333	Mesocricetus_auratus
ENSKMAG00000002315	ddb1	99	91.426	ENSMICG00000013703	DDB1	94	91.426	Microcebus_murinus
ENSKMAG00000002315	ddb1	99	91.240	ENSMOCG00000020499	Ddb1	94	91.240	Microtus_ochrogaster
ENSKMAG00000002315	ddb1	91	98.776	ENSMMOG00000001758	ddb1	99	98.776	Mola_mola
ENSKMAG00000002315	ddb1	100	83.210	ENSMODG00000020353	DDB1	93	83.210	Monodelphis_domestica
ENSKMAG00000002315	ddb1	99	98.322	ENSMALG00000014071	ddb1	94	98.322	Monopterus_albus
ENSKMAG00000002315	ddb1	99	91.333	MGP_CAROLIEiJ_G0022695	Ddb1	94	91.333	Mus_caroli
ENSKMAG00000002315	ddb1	99	91.426	ENSMUSG00000024740	Ddb1	94	91.426	Mus_musculus
ENSKMAG00000002315	ddb1	99	91.333	MGP_PahariEiJ_G0014189	Ddb1	94	91.333	Mus_pahari
ENSKMAG00000002315	ddb1	99	91.426	MGP_SPRETEiJ_G0023609	Ddb1	94	91.426	Mus_spretus
ENSKMAG00000002315	ddb1	99	88.164	ENSMPUG00000014200	DDB1	94	88.164	Mustela_putorius_furo
ENSKMAG00000002315	ddb1	99	91.426	ENSMLUG00000013232	DDB1	94	91.426	Myotis_lucifugus
ENSKMAG00000002315	ddb1	99	91.240	ENSNGAG00000009384	Ddb1	94	91.240	Nannospalax_galili
ENSKMAG00000002315	ddb1	99	98.136	ENSNBRG00000019581	ddb1	94	98.136	Neolamprologus_brichardi
ENSKMAG00000002315	ddb1	99	88.807	ENSNLEG00000002022	DDB1	94	88.807	Nomascus_leucogenys
ENSKMAG00000002315	ddb1	89	95.392	ENSMEUG00000001099	DDB1	87	95.392	Notamacropus_eugenii
ENSKMAG00000002315	ddb1	90	82.158	ENSOPRG00000008254	DDB1	85	82.158	Ochotona_princeps
ENSKMAG00000002315	ddb1	99	91.240	ENSODEG00000002419	DDB1	94	91.240	Octodon_degus
ENSKMAG00000002315	ddb1	99	98.136	ENSONIG00000005804	ddb1	94	98.136	Oreochromis_niloticus
ENSKMAG00000002315	ddb1	90	90.674	ENSOANG00000004897	DDB1	94	90.674	Ornithorhynchus_anatinus
ENSKMAG00000002315	ddb1	99	91.333	ENSOCUG00000001667	DDB1	94	91.333	Oryctolagus_cuniculus
ENSKMAG00000002315	ddb1	99	97.672	ENSORLG00000001399	ddb1	98	97.598	Oryzias_latipes
ENSKMAG00000002315	ddb1	99	97.579	ENSORLG00020001277	ddb1	95	97.579	Oryzias_latipes_hni
ENSKMAG00000002315	ddb1	99	97.672	ENSORLG00015002080	ddb1	99	97.672	Oryzias_latipes_hsok
ENSKMAG00000002315	ddb1	100	97.953	ENSOMEG00000006181	ddb1	97	97.953	Oryzias_melastigma
ENSKMAG00000002315	ddb1	99	91.426	ENSOGAG00000016103	DDB1	94	91.426	Otolemur_garnettii
ENSKMAG00000002315	ddb1	99	91.240	ENSOARG00000011716	DDB1	93	91.240	Ovis_aries
ENSKMAG00000002315	ddb1	99	91.333	ENSPPAG00000035343	DDB1	94	91.333	Pan_paniscus
ENSKMAG00000002315	ddb1	99	91.333	ENSPPRG00000013300	DDB1	94	91.333	Panthera_pardus
ENSKMAG00000002315	ddb1	98	91.350	ENSPTIG00000006909	DDB1	92	91.350	Panthera_tigris_altaica
ENSKMAG00000002315	ddb1	99	91.333	ENSPTRG00000003737	DDB1	94	91.333	Pan_troglodytes
ENSKMAG00000002315	ddb1	99	91.333	ENSPANG00000000242	DDB1	94	91.333	Papio_anubis
ENSKMAG00000002315	ddb1	100	95.628	ENSPKIG00000019213	ddb1	94	95.628	Paramormyrops_kingsleyae
ENSKMAG00000002315	ddb1	98	90.161	ENSPSIG00000013275	DDB1	94	90.161	Pelodiscus_sinensis
ENSKMAG00000002315	ddb1	91	98.469	ENSPMGG00000021179	ddb1	99	98.469	Periophthalmus_magnuspinnatus
ENSKMAG00000002315	ddb1	99	91.333	ENSPEMG00000012241	Ddb1	94	91.333	Peromyscus_maniculatus_bairdii
ENSKMAG00000002315	ddb1	95	86.837	ENSPMAG00000008479	ddb1	100	86.837	Petromyzon_marinus
ENSKMAG00000002315	ddb1	99	91.333	ENSPCIG00000002643	DDB1	94	91.333	Phascolarctos_cinereus
ENSKMAG00000002315	ddb1	99	98.880	ENSPFOG00000002768	ddb1	94	98.880	Poecilia_formosa
ENSKMAG00000002315	ddb1	99	98.883	ENSPLAG00000017227	ddb1	98	98.883	Poecilia_latipinna
ENSKMAG00000002315	ddb1	99	98.883	ENSPMEG00000011398	ddb1	98	98.883	Poecilia_mexicana
ENSKMAG00000002315	ddb1	99	98.883	ENSPREG00000004440	ddb1	97	98.883	Poecilia_reticulata
ENSKMAG00000002315	ddb1	99	87.547	ENSPPYG00000003193	DDB1	93	87.547	Pongo_abelii
ENSKMAG00000002315	ddb1	84	89.055	ENSPCAG00000011040	DDB1	79	89.055	Procavia_capensis
ENSKMAG00000002315	ddb1	99	90.977	ENSPCOG00000015176	DDB1	94	90.977	Propithecus_coquereli
ENSKMAG00000002315	ddb1	99	91.146	ENSPVAG00000003847	DDB1	94	91.146	Pteropus_vampyrus
ENSKMAG00000002315	ddb1	100	96.465	ENSPNAG00000006635	ddb1	97	96.465	Pygocentrus_nattereri
ENSKMAG00000002315	ddb1	99	91.426	ENSRNOG00000020715	Ddb1	94	91.426	Rattus_norvegicus
ENSKMAG00000002315	ddb1	99	91.333	ENSRBIG00000033611	DDB1	95	91.333	Rhinopithecus_bieti
ENSKMAG00000002315	ddb1	58	30.065	ENSRBIG00000044907	CPSF1	56	30.065	Rhinopithecus_bieti
ENSKMAG00000002315	ddb1	99	91.333	ENSRROG00000041407	DDB1	94	91.333	Rhinopithecus_roxellana
ENSKMAG00000002315	ddb1	58	30.065	ENSRROG00000044861	CPSF1	56	30.065	Rhinopithecus_roxellana
ENSKMAG00000002315	ddb1	99	91.426	ENSSBOG00000019775	DDB1	94	91.426	Saimiri_boliviensis_boliviensis
ENSKMAG00000002315	ddb1	93	88.833	ENSSHAG00000011600	DDB1	94	88.833	Sarcophilus_harrisii
ENSKMAG00000002315	ddb1	99	95.810	ENSSFOG00015011151	ddb1	97	95.810	Scleropages_formosus
ENSKMAG00000002315	ddb1	99	97.950	ENSSMAG00000009495	ddb1	94	97.950	Scophthalmus_maximus
ENSKMAG00000002315	ddb1	99	98.509	ENSSDUG00000004642	ddb1	94	98.509	Seriola_dumerili
ENSKMAG00000002315	ddb1	99	98.509	ENSSLDG00000015804	ddb1	94	98.509	Seriola_lalandi_dorsalis
ENSKMAG00000002315	ddb1	72	90.566	ENSSARG00000003290	-	71	90.566	Sorex_araneus
ENSKMAG00000002315	ddb1	99	90.680	ENSSPUG00000019338	DDB1	94	90.680	Sphenodon_punctatus
ENSKMAG00000002315	ddb1	99	98.603	ENSSPAG00000009888	ddb1	99	98.603	Stegastes_partitus
ENSKMAG00000002315	ddb1	99	90.926	ENSSSCG00000013094	DDB1	94	90.926	Sus_scrofa
ENSKMAG00000002315	ddb1	99	90.901	ENSTGUG00000006414	DDB1	94	90.901	Taeniopygia_guttata
ENSKMAG00000002315	ddb1	99	97.300	ENSTRUG00000016682	ddb1	99	97.300	Takifugu_rubripes
ENSKMAG00000002315	ddb1	87	91.337	ENSTNIG00000009565	ddb1	93	91.337	Tetraodon_nigroviridis
ENSKMAG00000002315	ddb1	92	85.265	ENSTTRG00000011055	DDB1	88	85.265	Tursiops_truncatus
ENSKMAG00000002315	ddb1	99	91.527	ENSUAMG00000017793	DDB1	93	91.527	Ursus_americanus
ENSKMAG00000002315	ddb1	99	91.527	ENSUMAG00000011788	DDB1	98	91.527	Ursus_maritimus
ENSKMAG00000002315	ddb1	89	86.566	ENSVPAG00000007963	DDB1	86	86.566	Vicugna_pacos
ENSKMAG00000002315	ddb1	99	91.333	ENSVVUG00000004987	DDB1	94	91.333	Vulpes_vulpes
ENSKMAG00000002315	ddb1	99	88.208	ENSXETG00000008820	ddb1	94	88.208	Xenopus_tropicalis
ENSKMAG00000002315	ddb1	91	98.673	ENSXCOG00000013956	ddb1	99	98.673	Xiphophorus_couchianus
ENSKMAG00000002315	ddb1	100	98.605	ENSXMAG00000000022	ddb1	99	98.605	Xiphophorus_maculatus