EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000002400 (Gene tree)
Gene ID: 108236534
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 5029 bases
Position: chrLWHD01000040.1:1012353-1017381
Accession: 108236534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000003181	PRP21_like_P	PF12230.8	2e-51	1	1
ENSKMAP00000003181	Surp	PF01805.20	5.6e-46	1	2
ENSKMAP00000003181	Surp	PF01805.20	5.6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000003244	-	3016	XM_017417239	ENSKMAP00000003181	786 (aa)	XP_017272728	UPI0007F91282

Gene Model

Click here to download ENSKMAG00000002400's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000002400's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000002400	sf3a1	98	84.896	ENSG00000099995	SF3A1	100	82.893	Homo_sapiens
ENSKMAG00000002400	sf3a1	100	93.893	ENSAPOG00000020465	sf3a1	100	93.893	Acanthochromis_polyacanthus
ENSKMAG00000002400	sf3a1	98	84.505	ENSAMEG00000007737	SF3A1	100	82.309	Ailuropoda_melanoleuca
ENSKMAG00000002400	sf3a1	100	94.275	ENSACIG00000020672	sf3a1	100	94.275	Amphilophus_citrinellus
ENSKMAG00000002400	sf3a1	100	93.639	ENSAOCG00000003060	sf3a1	100	93.639	Amphiprion_ocellaris
ENSKMAG00000002400	sf3a1	100	93.766	ENSAPEG00000010735	sf3a1	100	93.766	Amphiprion_percula
ENSKMAG00000002400	sf3a1	98	92.448	ENSATEG00000021201	sf3a1	97	92.448	Anabas_testudineus
ENSKMAG00000002400	sf3a1	96	84.058	ENSAPLG00000009057	SF3A1	100	82.759	Anas_platyrhynchos
ENSKMAG00000002400	sf3a1	100	80.617	ENSACAG00000009415	SF3A1	100	80.593	Anolis_carolinensis
ENSKMAG00000002400	sf3a1	98	84.635	ENSANAG00000032045	SF3A1	100	82.893	Aotus_nancymaae
ENSKMAG00000002400	sf3a1	100	92.239	ENSACLG00000012622	sf3a1	100	92.621	Astatotilapia_calliptera
ENSKMAG00000002400	sf3a1	99	87.898	ENSAMXG00000005382	sf3a1	99	88.153	Astyanax_mexicanus
ENSKMAG00000002400	sf3a1	98	84.766	ENSBTAG00000003390	SF3A1	100	82.767	Bos_taurus
ENSKMAG00000002400	sf3a1	81	44.906	WBGene00004188	prp-21	90	44.151	Caenorhabditis_elegans
ENSKMAG00000002400	sf3a1	98	84.766	ENSCJAG00000010370	SF3A1	100	83.019	Callithrix_jacchus
ENSKMAG00000002400	sf3a1	98	84.505	ENSCAFG00000012559	SF3A1	100	82.516	Canis_familiaris
ENSKMAG00000002400	sf3a1	98	84.505	ENSCAFG00020000838	SF3A1	100	82.516	Canis_lupus_dingo
ENSKMAG00000002400	sf3a1	98	84.896	ENSCHIG00000018642	SF3A1	100	82.893	Capra_hircus
ENSKMAG00000002400	sf3a1	98	84.635	ENSTSYG00000004739	SF3A1	100	82.642	Carlito_syrichta
ENSKMAG00000002400	sf3a1	95	67.914	ENSCAPG00000015414	SF3A1	98	67.781	Cavia_aperea
ENSKMAG00000002400	sf3a1	98	84.766	ENSCPOG00000014589	SF3A1	100	82.767	Cavia_porcellus
ENSKMAG00000002400	sf3a1	98	84.635	ENSCCAG00000032006	SF3A1	100	82.893	Cebus_capucinus
ENSKMAG00000002400	sf3a1	98	84.896	ENSCATG00000029241	SF3A1	100	82.893	Cercocebus_atys
ENSKMAG00000002400	sf3a1	98	84.766	ENSCLAG00000006508	SF3A1	100	82.767	Chinchilla_lanigera
ENSKMAG00000002400	sf3a1	98	84.896	ENSCSAG00000009470	SF3A1	100	82.893	Chlorocebus_sabaeus
ENSKMAG00000002400	sf3a1	58	89.811	ENSCHOG00000005201	SF3A1	64	89.811	Choloepus_hoffmanni
ENSKMAG00000002400	sf3a1	100	81.463	ENSCPBG00000007595	SF3A1	100	81.967	Chrysemys_picta_bellii
ENSKMAG00000002400	sf3a1	97	52.057	ENSCING00000008526	-	98	50.566	Ciona_intestinalis
ENSKMAG00000002400	sf3a1	92	60.684	ENSCSAVG00000005608	-	99	61.607	Ciona_savignyi
ENSKMAG00000002400	sf3a1	98	84.896	ENSCANG00000033564	SF3A1	100	82.893	Colobus_angolensis_palliatus
ENSKMAG00000002400	sf3a1	97	85.132	ENSCGRG00001008933	Sf3a1	100	82.516	Cricetulus_griseus_chok1gshd
ENSKMAG00000002400	sf3a1	97	85.132	ENSCGRG00000006127	Sf3a1	100	82.516	Cricetulus_griseus_crigri
ENSKMAG00000002400	sf3a1	100	90.228	ENSCSEG00000010792	sf3a1	100	90.102	Cynoglossus_semilaevis
ENSKMAG00000002400	sf3a1	100	92.376	ENSCVAG00000004560	sf3a1	100	92.376	Cyprinodon_variegatus
ENSKMAG00000002400	sf3a1	100	85.660	ENSDARG00000041887	sf3a1	100	88.636	Danio_rerio
ENSKMAG00000002400	sf3a1	98	85.046	ENSDNOG00000010629	SF3A1	98	83.842	Dasypus_novemcinctus
ENSKMAG00000002400	sf3a1	98	84.635	ENSDORG00000005613	Sf3a1	100	82.642	Dipodomys_ordii
ENSKMAG00000002400	sf3a1	84	61.394	FBgn0266917	Sf3a1	84	59.353	Drosophila_melanogaster
ENSKMAG00000002400	sf3a1	85	83.707	ENSETEG00000017194	SF3A1	95	83.558	Echinops_telfairi
ENSKMAG00000002400	sf3a1	97	67.625	ENSEBUG00000001285	sf3a1	95	68.210	Eptatretus_burgeri
ENSKMAG00000002400	sf3a1	98	84.766	ENSEASG00005010254	SF3A1	100	82.767	Equus_asinus_asinus
ENSKMAG00000002400	sf3a1	98	84.766	ENSECAG00000023962	SF3A1	100	82.767	Equus_caballus
ENSKMAG00000002400	sf3a1	74	88.525	ENSEEUG00000003159	SF3A1	81	88.525	Erinaceus_europaeus
ENSKMAG00000002400	sf3a1	100	85.932	ENSELUG00000022578	sf3a1	100	86.312	Esox_lucius
ENSKMAG00000002400	sf3a1	98	84.635	ENSFCAG00000011932	SF3A1	100	82.642	Felis_catus
ENSKMAG00000002400	sf3a1	96	83.113	ENSFALG00000006944	SF3A1	100	81.486	Ficedula_albicollis
ENSKMAG00000002400	sf3a1	98	84.766	ENSFDAG00000009560	SF3A1	100	82.767	Fukomys_damarensis
ENSKMAG00000002400	sf3a1	100	93.774	ENSFHEG00000010866	sf3a1	100	93.774	Fundulus_heteroclitus
ENSKMAG00000002400	sf3a1	100	87.150	ENSGMOG00000016024	sf3a1	100	86.641	Gadus_morhua
ENSKMAG00000002400	sf3a1	96	84.169	ENSGALG00000007937	SF3A1	100	82.242	Gallus_gallus
ENSKMAG00000002400	sf3a1	100	93.266	ENSGAFG00000009111	sf3a1	100	93.266	Gambusia_affinis
ENSKMAG00000002400	sf3a1	100	89.394	ENSGACG00000011893	sf3a1	100	88.005	Gasterosteus_aculeatus
ENSKMAG00000002400	sf3a1	96	80.658	ENSGAGG00000000762	SF3A1	99	81.184	Gopherus_agassizii
ENSKMAG00000002400	sf3a1	98	84.896	ENSGGOG00000012631	SF3A1	100	82.893	Gorilla_gorilla
ENSKMAG00000002400	sf3a1	100	93.384	ENSHBUG00000015795	sf3a1	100	92.621	Haplochromis_burtoni
ENSKMAG00000002400	sf3a1	99	83.846	ENSHGLG00000007907	SF3A1	100	82.767	Heterocephalus_glaber_female
ENSKMAG00000002400	sf3a1	99	83.846	ENSHGLG00100013799	SF3A1	100	82.767	Heterocephalus_glaber_male
ENSKMAG00000002400	sf3a1	100	88.550	ENSHCOG00000015423	sf3a1	100	87.659	Hippocampus_comes
ENSKMAG00000002400	sf3a1	98	85.401	ENSIPUG00000002470	sf3a1	99	85.142	Ictalurus_punctatus
ENSKMAG00000002400	sf3a1	98	84.876	ENSSTOG00000013892	SF3A1	100	83.145	Ictidomys_tridecemlineatus
ENSKMAG00000002400	sf3a1	98	84.766	ENSJJAG00000022566	Sf3a1	100	82.663	Jaculus_jaculus
ENSKMAG00000002400	sf3a1	100	90.840	ENSLBEG00000022974	sf3a1	100	89.822	Labrus_bergylta
ENSKMAG00000002400	sf3a1	100	82.933	ENSLACG00000003565	SF3A1	100	82.828	Latimeria_chalumnae
ENSKMAG00000002400	sf3a1	100	87.089	ENSLOCG00000008251	sf3a1	99	87.342	Lepisosteus_oculatus
ENSKMAG00000002400	sf3a1	98	84.766	ENSLAFG00000000448	SF3A1	100	82.767	Loxodonta_africana
ENSKMAG00000002400	sf3a1	99	54.819	ENSLAFG00000026032	-	99	54.068	Loxodonta_africana
ENSKMAG00000002400	sf3a1	98	84.766	ENSMFAG00000031979	SF3A1	100	82.767	Macaca_fascicularis
ENSKMAG00000002400	sf3a1	98	84.766	ENSMMUG00000005547	SF3A1	100	82.767	Macaca_mulatta
ENSKMAG00000002400	sf3a1	98	84.896	ENSMNEG00000037229	SF3A1	100	82.893	Macaca_nemestrina
ENSKMAG00000002400	sf3a1	98	84.896	ENSMLEG00000041908	SF3A1	100	82.893	Mandrillus_leucophaeus
ENSKMAG00000002400	sf3a1	98	93.005	ENSMAMG00000006460	sf3a1	97	93.005	Mastacembelus_armatus
ENSKMAG00000002400	sf3a1	100	92.239	ENSMZEG00005009633	sf3a1	100	92.621	Maylandia_zebra
ENSKMAG00000002400	sf3a1	96	84.169	ENSMGAG00000001330	SF3A1	99	84.073	Meleagris_gallopavo
ENSKMAG00000002400	sf3a1	93	81.471	ENSMAUG00000020317	Sf3a1	100	77.089	Mesocricetus_auratus
ENSKMAG00000002400	sf3a1	98	84.505	ENSMICG00000010038	SF3A1	100	82.516	Microcebus_murinus
ENSKMAG00000002400	sf3a1	98	84.635	ENSMOCG00000008438	Sf3a1	100	82.893	Microtus_ochrogaster
ENSKMAG00000002400	sf3a1	100	88.168	ENSMMOG00000015588	sf3a1	99	88.295	Mola_mola
ENSKMAG00000002400	sf3a1	99	82.905	ENSMODG00000009270	SF3A1	100	83.249	Monodelphis_domestica
ENSKMAG00000002400	sf3a1	100	92.005	ENSMALG00000000148	sf3a1	100	92.386	Monopterus_albus
ENSKMAG00000002400	sf3a1	98	84.845	MGP_CAROLIEiJ_G0016029	Sf3a1	99	83.081	Mus_caroli
ENSKMAG00000002400	sf3a1	98	84.845	ENSMUSG00000002129	Sf3a1	99	83.081	Mus_musculus
ENSKMAG00000002400	sf3a1	98	84.715	MGP_PahariEiJ_G0016862	Sf3a1	99	83.081	Mus_pahari
ENSKMAG00000002400	sf3a1	98	84.845	MGP_SPRETEiJ_G0016870	Sf3a1	99	83.081	Mus_spretus
ENSKMAG00000002400	sf3a1	98	83.984	ENSMPUG00000013144	SF3A1	100	82.642	Mustela_putorius_furo
ENSKMAG00000002400	sf3a1	99	83.954	ENSMLUG00000002139	SF3A1	100	82.767	Myotis_lucifugus
ENSKMAG00000002400	sf3a1	98	84.635	ENSNGAG00000016977	Sf3a1	100	82.642	Nannospalax_galili
ENSKMAG00000002400	sf3a1	100	92.513	ENSNBRG00000016642	sf3a1	100	91.751	Neolamprologus_brichardi
ENSKMAG00000002400	sf3a1	98	84.896	ENSNLEG00000003686	SF3A1	100	82.893	Nomascus_leucogenys
ENSKMAG00000002400	sf3a1	94	75.339	ENSMEUG00000008741	SF3A1	100	74.770	Notamacropus_eugenii
ENSKMAG00000002400	sf3a1	98	84.994	ENSOPRG00000016636	SF3A1	100	83.417	Ochotona_princeps
ENSKMAG00000002400	sf3a1	98	84.436	ENSODEG00000002571	SF3A1	100	82.872	Octodon_degus
ENSKMAG00000002400	sf3a1	100	93.639	ENSONIG00000010848	sf3a1	100	92.875	Oreochromis_niloticus
ENSKMAG00000002400	sf3a1	98	84.067	ENSOCUG00000007633	SF3A1	100	82.767	Oryctolagus_cuniculus
ENSKMAG00000002400	sf3a1	96	91.368	ENSORLG00000013050	sf3a1	99	90.837	Oryzias_latipes
ENSKMAG00000002400	sf3a1	96	91.368	ENSORLG00020003236	sf3a1	95	90.837	Oryzias_latipes_hni
ENSKMAG00000002400	sf3a1	100	91.603	ENSORLG00015017411	sf3a1	100	91.094	Oryzias_latipes_hsok
ENSKMAG00000002400	sf3a1	100	91.730	ENSOMEG00000013362	sf3a1	100	91.094	Oryzias_melastigma
ENSKMAG00000002400	sf3a1	98	84.635	ENSOGAG00000012931	SF3A1	100	82.642	Otolemur_garnettii
ENSKMAG00000002400	sf3a1	98	83.594	ENSOARG00000006849	SF3A1	100	81.761	Ovis_aries
ENSKMAG00000002400	sf3a1	98	83.984	ENSPPAG00000041790	SF3A1	100	82.013	Pan_paniscus
ENSKMAG00000002400	sf3a1	98	84.635	ENSPPRG00000004391	SF3A1	100	82.642	Panthera_pardus
ENSKMAG00000002400	sf3a1	98	84.505	ENSPTIG00000000844	SF3A1	99	84.375	Panthera_tigris_altaica
ENSKMAG00000002400	sf3a1	98	84.896	ENSPTRG00000014240	SF3A1	100	82.893	Pan_troglodytes
ENSKMAG00000002400	sf3a1	98	84.896	ENSPANG00000020772	SF3A1	100	82.893	Papio_anubis
ENSKMAG00000002400	sf3a1	78	93.407	ENSPSIG00000012803	SF3A1	98	93.407	Pelodiscus_sinensis
ENSKMAG00000002400	sf3a1	97	88.497	ENSPMGG00000023096	sf3a1	100	89.412	Periophthalmus_magnuspinnatus
ENSKMAG00000002400	sf3a1	97	85.263	ENSPEMG00000009494	Sf3a1	100	82.642	Peromyscus_maniculatus_bairdii
ENSKMAG00000002400	sf3a1	69	77.555	ENSPMAG00000007139	-	100	74.324	Petromyzon_marinus
ENSKMAG00000002400	sf3a1	98	83.528	ENSPCIG00000022692	SF3A1	100	82.746	Phascolarctos_cinereus
ENSKMAG00000002400	sf3a1	100	83.079	ENSPFOG00000016768	sf3a1	100	83.079	Poecilia_formosa
ENSKMAG00000002400	sf3a1	100	93.901	ENSPLAG00000017268	sf3a1	100	93.901	Poecilia_latipinna
ENSKMAG00000002400	sf3a1	96	93.684	ENSPMEG00000019811	sf3a1	100	93.534	Poecilia_mexicana
ENSKMAG00000002400	sf3a1	100	93.774	ENSPREG00000010347	sf3a1	100	93.774	Poecilia_reticulata
ENSKMAG00000002400	sf3a1	98	84.896	ENSPPYG00000011707	SF3A1	100	82.893	Pongo_abelii
ENSKMAG00000002400	sf3a1	58	84.711	ENSPCAG00000003266	SF3A1	57	84.711	Procavia_capensis
ENSKMAG00000002400	sf3a1	98	84.505	ENSPCOG00000026630	SF3A1	100	82.516	Propithecus_coquereli
ENSKMAG00000002400	sf3a1	95	85.007	ENSPVAG00000017719	SF3A1	94	84.471	Pteropus_vampyrus
ENSKMAG00000002400	sf3a1	100	93.130	ENSPNYG00000018706	sf3a1	100	92.366	Pundamilia_nyererei
ENSKMAG00000002400	sf3a1	99	87.898	ENSPNAG00000003721	sf3a1	99	87.771	Pygocentrus_nattereri
ENSKMAG00000002400	sf3a1	98	84.605	ENSRNOG00000005218	Sf3a1	99	82.702	Rattus_norvegicus
ENSKMAG00000002400	sf3a1	98	84.896	ENSRBIG00000032167	SF3A1	100	82.893	Rhinopithecus_bieti
ENSKMAG00000002400	sf3a1	98	84.896	ENSRROG00000044908	SF3A1	100	82.893	Rhinopithecus_roxellana
ENSKMAG00000002400	sf3a1	94	84.898	ENSSBOG00000021960	SF3A1	98	84.511	Saimiri_boliviensis_boliviensis
ENSKMAG00000002400	sf3a1	100	79.771	ENSSHAG00000003666	SF3A1	99	81.043	Sarcophilus_harrisii
ENSKMAG00000002400	sf3a1	100	88.116	ENSSFOG00015004579	sf3a1	100	88.622	Scleropages_formosus
ENSKMAG00000002400	sf3a1	100	89.567	ENSSMAG00000004275	sf3a1	100	89.186	Scophthalmus_maximus
ENSKMAG00000002400	sf3a1	100	93.130	ENSSDUG00000022219	sf3a1	100	92.494	Seriola_dumerili
ENSKMAG00000002400	sf3a1	100	93.130	ENSSLDG00000012642	sf3a1	100	92.494	Seriola_lalandi_dorsalis
ENSKMAG00000002400	sf3a1	98	80.983	ENSSARG00000005960	SF3A1	99	80.854	Sorex_araneus
ENSKMAG00000002400	sf3a1	97	83.896	ENSSPUG00000018863	SF3A1	100	82.565	Sphenodon_punctatus
ENSKMAG00000002400	sf3a1	100	93.257	ENSSPAG00000011856	sf3a1	100	92.494	Stegastes_partitus
ENSKMAG00000002400	sf3a1	98	84.375	ENSSSCG00000010002	SF3A1	100	83.019	Sus_scrofa
ENSKMAG00000002400	sf3a1	96	83.816	ENSTGUG00000010547	SF3A1	99	83.724	Taeniopygia_guttata
ENSKMAG00000002400	sf3a1	100	88.168	ENSTRUG00000006118	sf3a1	100	87.277	Takifugu_rubripes
ENSKMAG00000002400	sf3a1	62	87.361	ENSTNIG00000005713	sf3a1	89	86.726	Tetraodon_nigroviridis
ENSKMAG00000002400	sf3a1	98	78.385	ENSTBEG00000012771	SF3A1	100	76.604	Tupaia_belangeri
ENSKMAG00000002400	sf3a1	98	84.005	ENSTTRG00000001535	SF3A1	100	82.161	Tursiops_truncatus
ENSKMAG00000002400	sf3a1	99	81.876	ENSUAMG00000006750	SF3A1	99	81.749	Ursus_americanus
ENSKMAG00000002400	sf3a1	100	82.642	ENSUMAG00000016665	SF3A1	99	83.419	Ursus_maritimus
ENSKMAG00000002400	sf3a1	98	84.505	ENSVVUG00000003075	SF3A1	100	82.516	Vulpes_vulpes
ENSKMAG00000002400	sf3a1	100	78.652	ENSXETG00000016144	sf3a1	96	83.065	Xenopus_tropicalis
ENSKMAG00000002400	sf3a1	100	93.266	ENSXCOG00000015653	sf3a1	100	93.266	Xiphophorus_couchianus
ENSKMAG00000002400	sf3a1	100	93.520	ENSXMAG00000002753	sf3a1	100	93.520	Xiphophorus_maculatus