EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000002806 (Gene tree)
Gene ID
108249674
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Plus strand
Length
4895 bases
Position
chrLWHD01000478.1:136950-141844
Accession
108249674
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000003680CPSF73-100_CPF11718.81e-5111
ENSKMAP00000003680Beta-CaspPF10996.81.1e-3311
ENSKMAP00000003680Lactamase_BPF00753.272.5e-1811
ENSKMAP00000003680RMMBLPF07521.121.6e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000003751-2317XM_017439212ENSKMAP00000003680686 (aa)XP_017294701UPI0007F87E9C
Gene Model
Click here to download ENSKMAG00000002806's gene model file
Pathways
Pathway IDPathway NameSource
kmr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000002806's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000002806cpsf36539.427ENSKMAG00000003315ints117439.427
ENSKMAG00000002806cpsf39986.337ENSKMAG00000007317CPSF39986.337
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000002806cpsf39884.831ENSG00000119203CPSF310097.794Homo_sapiens
ENSKMAG00000002806cpsf310094.315ENSAPOG00000022087cpsf310094.315Acanthochromis_polyacanthus
ENSKMAG00000002806cpsf37495.661ENSAPOG00000012241CPSF39195.661Acanthochromis_polyacanthus
ENSKMAG00000002806cpsf39884.831ENSAMEG00000008493CPSF39984.831Ailuropoda_melanoleuca
ENSKMAG00000002806cpsf39184.420ENSACIG00000023663CPSF39978.665Amphilophus_citrinellus
ENSKMAG00000002806cpsf39189.617ENSACIG00000009846cpsf310082.969Amphilophus_citrinellus
ENSKMAG00000002806cpsf310094.606ENSAOCG00000022056cpsf310094.606Amphiprion_ocellaris
ENSKMAG00000002806cpsf310086.812ENSAOCG00000010077CPSF310086.812Amphiprion_ocellaris
ENSKMAG00000002806cpsf310094.606ENSAPEG00000019526cpsf310094.606Amphiprion_percula
ENSKMAG00000002806cpsf310086.812ENSAPEG00000021167CPSF310086.812Amphiprion_percula
ENSKMAG00000002806cpsf39982.994ENSATEG00000014525CPSF39982.994Anabas_testudineus
ENSKMAG00000002806cpsf39993.567ENSATEG00000003959cpsf39993.567Anabas_testudineus
ENSKMAG00000002806cpsf39784.179ENSAPLG00000006941CPSF39884.179Anas_platyrhynchos
ENSKMAG00000002806cpsf39282.334ENSACAG00000001759CPSF39982.334Anolis_carolinensis
ENSKMAG00000002806cpsf39880.000ENSANAG00000031254CPSF39980.480Aotus_nancymaae
ENSKMAG00000002806cpsf39184.738ENSACLG00000018846CPSF39978.665Astatotilapia_calliptera
ENSKMAG00000002806cpsf39794.260ENSACLG00000014484cpsf39994.260Astatotilapia_calliptera
ENSKMAG00000002806cpsf39986.628ENSAMXG00000004786cpsf39986.628Astyanax_mexicanus
ENSKMAG00000002806cpsf39884.831ENSBTAG00000019735CPSF39984.831Bos_taurus
ENSKMAG00000002806cpsf39057.256WBGene00013460cpsf-38957.256Caenorhabditis_elegans
ENSKMAG00000002806cpsf39884.683ENSCJAG00000006276CPSF39984.683Callithrix_jacchus
ENSKMAG00000002806cpsf39884.831ENSCAFG00000003375CPSF39584.831Canis_familiaris
ENSKMAG00000002806cpsf39087.682ENSCAFG00020026799CPSF39987.682Canis_lupus_dingo
ENSKMAG00000002806cpsf39884.831ENSCHIG00000013973CPSF39984.831Capra_hircus
ENSKMAG00000002806cpsf39884.706ENSTSYG00000002967CPSF39984.706Carlito_syrichta
ENSKMAG00000002806cpsf39684.962ENSCAPG00000013851CPSF39984.962Cavia_aperea
ENSKMAG00000002806cpsf39885.125ENSCPOG00000011299CPSF39985.125Cavia_porcellus
ENSKMAG00000002806cpsf39884.683ENSCCAG00000036730CPSF39984.683Cebus_capucinus
ENSKMAG00000002806cpsf39882.500ENSCATG00000014770CPSF39990.328Cercocebus_atys
ENSKMAG00000002806cpsf39885.125ENSCLAG00000002727CPSF39985.125Chinchilla_lanigera
ENSKMAG00000002806cpsf39877.025ENSCSAG00000007125CPSF39977.025Chlorocebus_sabaeus
ENSKMAG00000002806cpsf385100.000ENSCHOG00000000180CPSF38560.739Choloepus_hoffmanni
ENSKMAG00000002806cpsf39984.325ENSCPBG00000014074CPSF39984.325Chrysemys_picta_bellii
ENSKMAG00000002806cpsf39868.035ENSCING00000007214-9768.035Ciona_intestinalis
ENSKMAG00000002806cpsf39874.708ENSCANG00000034435CPSF39974.708Colobus_angolensis_palliatus
ENSKMAG00000002806cpsf39884.412ENSCGRG00001013134Cpsf39984.412Cricetulus_griseus_chok1gshd
ENSKMAG00000002806cpsf39884.412ENSCGRG00000018319Cpsf39984.412Cricetulus_griseus_crigri
ENSKMAG00000002806cpsf39985.631ENSCSEG00000002021CPSF39985.631Cynoglossus_semilaevis
ENSKMAG00000002806cpsf39986.483ENSCVAG00000015067CPSF39986.483Cyprinodon_variegatus
ENSKMAG00000002806cpsf310086.522ENSDARG00000027649cpsf310086.522Danio_rerio
ENSKMAG00000002806cpsf39883.554ENSDNOG00000008940CPSF39583.554Dasypus_novemcinctus
ENSKMAG00000002806cpsf39486.287ENSDORG00000014263Cpsf39986.287Dipodomys_ordii
ENSKMAG00000002806cpsf39965.836FBgn0261065Cpsf739965.836Drosophila_melanogaster
ENSKMAG00000002806cpsf39473.920ENSETEG00000003893CPSF39973.920Echinops_telfairi
ENSKMAG00000002806cpsf39974.576ENSEBUG00000009018cpsf39974.576Eptatretus_burgeri
ENSKMAG00000002806cpsf39884.831ENSEASG00005003970CPSF39984.831Equus_asinus_asinus
ENSKMAG00000002806cpsf39884.831ENSECAG00000019911CPSF39690.034Equus_caballus
ENSKMAG00000002806cpsf39870.294ENSEEUG00000015422CPSF39970.294Erinaceus_europaeus
ENSKMAG00000002806cpsf39989.260ENSELUG00000013775cpsf39989.260Esox_lucius
ENSKMAG00000002806cpsf39884.831ENSFCAG00000007852CPSF39984.831Felis_catus
ENSKMAG00000002806cpsf39483.771ENSFALG00000006572CPSF310083.771Ficedula_albicollis
ENSKMAG00000002806cpsf39884.412ENSFDAG00000006317CPSF39984.412Fukomys_damarensis
ENSKMAG00000002806cpsf310094.461ENSFHEG00000014774cpsf310094.461Fundulus_heteroclitus
ENSKMAG00000002806cpsf35866.505ENSFHEG00000012186CPSF310066.505Fundulus_heteroclitus
ENSKMAG00000002806cpsf310089.405ENSGMOG00000003157cpsf310089.405Gadus_morhua
ENSKMAG00000002806cpsf39984.325ENSGALG00000016424CPSF39984.325Gallus_gallus
ENSKMAG00000002806cpsf39792.160ENSGAFG00000019449cpsf310085.714Gambusia_affinis
ENSKMAG00000002806cpsf310087.101ENSGAFG00000008016CPSF310087.101Gambusia_affinis
ENSKMAG00000002806cpsf36779.015ENSGAGG00000025583CPSF39379.015Gopherus_agassizii
ENSKMAG00000002806cpsf39882.590ENSGGOG00000001757CPSF39196.559Gorilla_gorilla
ENSKMAG00000002806cpsf35878.272ENSHBUG00000014332CPSF310078.272Haplochromis_burtoni
ENSKMAG00000002806cpsf310094.023ENSHBUG00000001188cpsf310094.023Haplochromis_burtoni
ENSKMAG00000002806cpsf39884.831ENSHGLG00000000666CPSF39884.831Heterocephalus_glaber_female
ENSKMAG00000002806cpsf39884.831ENSHGLG00100007765CPSF39884.831Heterocephalus_glaber_male
ENSKMAG00000002806cpsf39986.047ENSHCOG00000015957CPSF39986.047Hippocampus_comes
ENSKMAG00000002806cpsf39991.959ENSHCOG00000007251cpsf39991.959Hippocampus_comes
ENSKMAG00000002806cpsf39986.919ENSIPUG00000023488cpsf39986.919Ictalurus_punctatus
ENSKMAG00000002806cpsf39884.118ENSSTOG00000004476CPSF39984.118Ictidomys_tridecemlineatus
ENSKMAG00000002806cpsf39984.164ENSJJAG00000023415Cpsf39984.164Jaculus_jaculus
ENSKMAG00000002806cpsf39985.088ENSLBEG00000020569cpsf39685.088Labrus_bergylta
ENSKMAG00000002806cpsf39687.976ENSLBEG00000013492CPSF39987.976Labrus_bergylta
ENSKMAG00000002806cpsf35488.441ENSLBEG00000015018-9988.441Labrus_bergylta
ENSKMAG00000002806cpsf39979.420ENSLACG00000008308CPSF39979.420Latimeria_chalumnae
ENSKMAG00000002806cpsf310087.013ENSLOCG00000016823cpsf310087.013Lepisosteus_oculatus
ENSKMAG00000002806cpsf39883.628ENSLAFG00000009467CPSF39983.628Loxodonta_africana
ENSKMAG00000002806cpsf39884.683ENSMFAG00000001339CPSF39493.555Macaca_fascicularis
ENSKMAG00000002806cpsf39384.031ENSMMUG00000018038CPSF39293.555Macaca_mulatta
ENSKMAG00000002806cpsf39096.400ENSMNEG00000039447CPSF39996.400Macaca_nemestrina
ENSKMAG00000002806cpsf39884.831ENSMLEG00000026825CPSF39296.146Mandrillus_leucophaeus
ENSKMAG00000002806cpsf39184.286ENSMAMG00000008835CPSF39978.551Mastacembelus_armatus
ENSKMAG00000002806cpsf310091.837ENSMAMG00000003076cpsf310091.837Mastacembelus_armatus
ENSKMAG00000002806cpsf310094.023ENSMZEG00005014358cpsf310094.023Maylandia_zebra
ENSKMAG00000002806cpsf310086.667ENSMZEG00005006258CPSF310086.667Maylandia_zebra
ENSKMAG00000002806cpsf39784.258ENSMGAG00000013995CPSF310084.258Meleagris_gallopavo
ENSKMAG00000002806cpsf35474.064ENSMAUG00000000166Cpsf39974.064Mesocricetus_auratus
ENSKMAG00000002806cpsf39879.619ENSMICG00000002363CPSF39979.619Microcebus_murinus
ENSKMAG00000002806cpsf39881.805ENSMOCG00000020067Cpsf39981.805Microtus_ochrogaster
ENSKMAG00000002806cpsf39385.335ENSMMOG00000018212CPSF39885.335Mola_mola
ENSKMAG00000002806cpsf38070.238ENSMMOG00000011923CPSF38476.786Mola_mola
ENSKMAG00000002806cpsf39882.824ENSMODG00000014703CPSF39982.824Monodelphis_domestica
ENSKMAG00000002806cpsf310093.003ENSMALG00000016416cpsf310093.003Monopterus_albus
ENSKMAG00000002806cpsf39282.835ENSMALG00000011474CPSF39982.835Monopterus_albus
ENSKMAG00000002806cpsf39884.706MGP_CAROLIEiJ_G0017640Cpsf39984.706Mus_caroli
ENSKMAG00000002806cpsf39884.706ENSMUSG00000054309Cpsf39696.610Mus_musculus
ENSKMAG00000002806cpsf39884.559MGP_PahariEiJ_G0029397Cpsf39984.559Mus_pahari
ENSKMAG00000002806cpsf39884.706MGP_SPRETEiJ_G0018481Cpsf39984.706Mus_spretus
ENSKMAG00000002806cpsf39984.728ENSMPUG00000013213CPSF39984.728Mustela_putorius_furo
ENSKMAG00000002806cpsf39884.728ENSMLUG00000010636CPSF39984.728Myotis_lucifugus
ENSKMAG00000002806cpsf39884.559ENSNGAG00000019836Cpsf39984.559Nannospalax_galili
ENSKMAG00000002806cpsf310093.878ENSNBRG00000004770cpsf310093.878Neolamprologus_brichardi
ENSKMAG00000002806cpsf39184.738ENSNBRG00000010525CPSF39978.665Neolamprologus_brichardi
ENSKMAG00000002806cpsf39884.683ENSNLEG00000013359CPSF39196.352Nomascus_leucogenys
ENSKMAG00000002806cpsf39854.345ENSMEUG00000013117-9954.345Notamacropus_eugenii
ENSKMAG00000002806cpsf39976.065ENSOPRG00000008902CPSF39976.065Ochotona_princeps
ENSKMAG00000002806cpsf39885.272ENSODEG00000003129CPSF39985.272Octodon_degus
ENSKMAG00000002806cpsf310094.169ENSONIG00000018812cpsf310094.169Oreochromis_niloticus
ENSKMAG00000002806cpsf38182.028ENSOANG00000008577CPSF39982.028Ornithorhynchus_anatinus
ENSKMAG00000002806cpsf39884.706ENSOCUG00000003728CPSF39984.706Oryctolagus_cuniculus
ENSKMAG00000002806cpsf310092.128ENSORLG00000018854cpsf310092.128Oryzias_latipes
ENSKMAG00000002806cpsf310092.274ENSORLG00020013331cpsf310092.274Oryzias_latipes_hni
ENSKMAG00000002806cpsf310092.128ENSORLG00015011017cpsf310092.128Oryzias_latipes_hsok
ENSKMAG00000002806cpsf310092.274ENSOMEG00000010647cpsf39692.274Oryzias_melastigma
ENSKMAG00000002806cpsf39875.000ENSOGAG00000001680CPSF39975.000Otolemur_garnettii
ENSKMAG00000002806cpsf39884.831ENSOARG00000015073CPSF39984.831Ovis_aries
ENSKMAG00000002806cpsf39884.831ENSPPAG00000042457CPSF39196.352Pan_paniscus
ENSKMAG00000002806cpsf39884.831ENSPPRG00000016790CPSF39984.853Panthera_pardus
ENSKMAG00000002806cpsf39884.956ENSPTIG00000003920CPSF39985.103Panthera_tigris_altaica
ENSKMAG00000002806cpsf39884.831ENSPTRG00000011638CPSF39196.352Pan_troglodytes
ENSKMAG00000002806cpsf39884.831ENSPANG00000016798CPSF39493.555Papio_anubis
ENSKMAG00000002806cpsf310087.826ENSPKIG00000023646cpsf310087.826Paramormyrops_kingsleyae
ENSKMAG00000002806cpsf39983.016ENSPSIG00000016144CPSF310083.016Pelodiscus_sinensis
ENSKMAG00000002806cpsf35879.012ENSPMGG00000015311CPSF310079.012Periophthalmus_magnuspinnatus
ENSKMAG00000002806cpsf38290.653ENSPMGG00000006141-10078.426Periophthalmus_magnuspinnatus
ENSKMAG00000002806cpsf39884.536ENSPEMG00000017668Cpsf39984.683Peromyscus_maniculatus_bairdii
ENSKMAG00000002806cpsf37988.398ENSPMAG00000004841cpsf39988.398Petromyzon_marinus
ENSKMAG00000002806cpsf39683.910ENSPCIG00000009823CPSF39884.663Phascolarctos_cinereus
ENSKMAG00000002806cpsf310094.461ENSPFOG00000015922cpsf310094.461Poecilia_formosa
ENSKMAG00000002806cpsf310086.667ENSPFOG00000010418-10086.667Poecilia_formosa
ENSKMAG00000002806cpsf310094.461ENSPLAG00000000882cpsf310094.461Poecilia_latipinna
ENSKMAG00000002806cpsf35879.506ENSPLAG00000021300-10079.506Poecilia_latipinna
ENSKMAG00000002806cpsf310094.461ENSPMEG00000018309cpsf310094.461Poecilia_mexicana
ENSKMAG00000002806cpsf310081.159ENSPREG00000004482CPSF310081.159Poecilia_reticulata
ENSKMAG00000002806cpsf39792.160ENSPREG00000014875cpsf310085.714Poecilia_reticulata
ENSKMAG00000002806cpsf39880.560ENSPPYG00000012666CPSF39980.560Pongo_abelii
ENSKMAG00000002806cpsf38464.717ENSPCAG00000015042CPSF38964.717Procavia_capensis
ENSKMAG00000002806cpsf38688.214ENSPCOG00000023016CPSF39788.214Propithecus_coquereli
ENSKMAG00000002806cpsf39984.728ENSPVAG00000005324CPSF39984.728Pteropus_vampyrus
ENSKMAG00000002806cpsf310094.023ENSPNYG00000004405cpsf310094.023Pundamilia_nyererei
ENSKMAG00000002806cpsf37990.590ENSPNYG00000021047CPSF39183.056Pundamilia_nyererei
ENSKMAG00000002806cpsf39987.209ENSPNAG00000023060cpsf39987.209Pygocentrus_nattereri
ENSKMAG00000002806cpsf39884.706ENSRNOG00000052418Cpsf39984.706Rattus_norvegicus
ENSKMAG00000002806cpsf39880.265ENSRBIG00000041615CPSF39981.085Rhinopithecus_bieti
ENSKMAG00000002806cpsf39884.831ENSRROG00000033792CPSF39984.831Rhinopithecus_roxellana
ENSKMAG00000002806cpsf39239.919YLR277CYSH19439.919Saccharomyces_cerevisiae
ENSKMAG00000002806cpsf39681.504ENSSBOG00000027263CPSF39781.504Saimiri_boliviensis_boliviensis
ENSKMAG00000002806cpsf39884.118ENSSHAG00000007024CPSF39984.118Sarcophilus_harrisii
ENSKMAG00000002806cpsf310087.826ENSSFOG00015002108cpsf310087.826Scleropages_formosus
ENSKMAG00000002806cpsf39687.367ENSSMAG00000020534CPSF39787.367Scophthalmus_maximus
ENSKMAG00000002806cpsf310092.711ENSSDUG00000002828cpsf39792.711Seriola_dumerili
ENSKMAG00000002806cpsf310086.667ENSSDUG00000018498CPSF310086.667Seriola_dumerili
ENSKMAG00000002806cpsf310086.667ENSSLDG00000005234CPSF310086.667Seriola_lalandi_dorsalis
ENSKMAG00000002806cpsf310092.420ENSSLDG00000008469cpsf39792.420Seriola_lalandi_dorsalis
ENSKMAG00000002806cpsf38882.298ENSSARG00000005186CPSF38982.298Sorex_araneus
ENSKMAG00000002806cpsf39682.960ENSSPUG00000015525CPSF39782.960Sphenodon_punctatus
ENSKMAG00000002806cpsf310094.461ENSSPAG00000018579cpsf310094.461Stegastes_partitus
ENSKMAG00000002806cpsf310086.232ENSSPAG00000002906CPSF310086.232Stegastes_partitus
ENSKMAG00000002806cpsf39884.831ENSSSCG00000020799CPSF39984.831Sus_scrofa
ENSKMAG00000002806cpsf39984.064ENSTGUG00000013016CPSF310084.064Taeniopygia_guttata
ENSKMAG00000002806cpsf35871.358ENSTRUG00000013905CPSF39971.358Takifugu_rubripes
ENSKMAG00000002806cpsf39991.387ENSTRUG00000007030cpsf39891.387Takifugu_rubripes
ENSKMAG00000002806cpsf38490.083ENSTBEG00000002707CPSF38490.083Tupaia_belangeri
ENSKMAG00000002806cpsf38673.236ENSTTRG00000000861CPSF38773.236Tursiops_truncatus
ENSKMAG00000002806cpsf39585.802ENSUAMG00000007535CPSF39485.802Ursus_americanus
ENSKMAG00000002806cpsf39384.186ENSUMAG00000003676CPSF39489.606Ursus_maritimus
ENSKMAG00000002806cpsf39284.858ENSVPAG00000008041CPSF310084.858Vicugna_pacos
ENSKMAG00000002806cpsf39884.831ENSVVUG00000002194CPSF39984.831Vulpes_vulpes
ENSKMAG00000002806cpsf39983.623ENSXETG00000008263cpsf39983.623Xenopus_tropicalis
ENSKMAG00000002806cpsf35477.688ENSXCOG00000000957-8777.688Xiphophorus_couchianus
ENSKMAG00000002806cpsf310093.586ENSXCOG00000019695cpsf310093.586Xiphophorus_couchianus
ENSKMAG00000002806cpsf310094.169ENSXMAG00000009784cpsf310094.169Xiphophorus_maculatus
ENSKMAG00000002806cpsf310086.957ENSXMAG00000027291CPSF310086.957Xiphophorus_maculatus

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