EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000003016 (Gene tree)
Gene ID: 108236488
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 4125 bases
Position: chrLWHD01000040.1:1258573-1262697
Accession: 108236488
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000003958	LSM	PF01423.22	2.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000004036	-	1881	XM_017417155	ENSKMAP00000003958	133 (aa)	XP_017272644	UPI0007F8A429

Gene Model

Click here to download ENSKMAG00000003016's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000003016's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000003016	lsm1	100	84.211	ENSG00000175324	LSM1	100	84.211	Homo_sapiens
ENSKMAG00000003016	lsm1	100	98.496	ENSAPOG00000010833	lsm1	100	98.496	Acanthochromis_polyacanthus
ENSKMAG00000003016	lsm1	100	84.211	ENSAMEG00000011141	LSM1	100	84.211	Ailuropoda_melanoleuca
ENSKMAG00000003016	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSKMAG00000003016	lsm1	100	98.496	ENSAOCG00000017096	lsm1	100	98.496	Amphiprion_ocellaris
ENSKMAG00000003016	lsm1	100	98.496	ENSAOCG00000017997	-	100	98.496	Amphiprion_ocellaris
ENSKMAG00000003016	lsm1	100	98.496	ENSAPEG00000011669	lsm1	100	98.496	Amphiprion_percula
ENSKMAG00000003016	lsm1	100	100.000	ENSATEG00000022266	lsm1	100	100.000	Anabas_testudineus
ENSKMAG00000003016	lsm1	100	84.211	ENSANAG00000027785	LSM1	100	84.211	Aotus_nancymaae
ENSKMAG00000003016	lsm1	100	99.248	ENSACLG00000011400	lsm1	100	99.248	Astatotilapia_calliptera
ENSKMAG00000003016	lsm1	100	83.459	ENSAMXG00000005441	lsm1	100	83.459	Astyanax_mexicanus
ENSKMAG00000003016	lsm1	100	83.459	ENSBTAG00000001612	LSM1	100	83.459	Bos_taurus
ENSKMAG00000003016	lsm1	87	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSKMAG00000003016	lsm1	100	83.459	ENSCJAG00000048015	LSM1	100	83.459	Callithrix_jacchus
ENSKMAG00000003016	lsm1	100	84.211	ENSCAFG00000006113	LSM1	100	84.211	Canis_familiaris
ENSKMAG00000003016	lsm1	100	84.211	ENSCAFG00020001822	LSM1	100	84.211	Canis_lupus_dingo
ENSKMAG00000003016	lsm1	100	84.211	ENSCHIG00000013194	LSM1	100	84.211	Capra_hircus
ENSKMAG00000003016	lsm1	100	84.211	ENSTSYG00000010394	LSM1	100	84.211	Carlito_syrichta
ENSKMAG00000003016	lsm1	100	84.211	ENSCPOG00000032671	LSM1	100	84.211	Cavia_porcellus
ENSKMAG00000003016	lsm1	100	84.211	ENSCCAG00000037171	LSM1	100	84.211	Cebus_capucinus
ENSKMAG00000003016	lsm1	100	84.211	ENSCATG00000020377	LSM1	100	84.211	Cercocebus_atys
ENSKMAG00000003016	lsm1	100	82.707	ENSCLAG00000001137	LSM1	100	82.707	Chinchilla_lanigera
ENSKMAG00000003016	lsm1	100	84.211	ENSCSAG00000015485	LSM1	100	84.211	Chlorocebus_sabaeus
ENSKMAG00000003016	lsm1	100	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSKMAG00000003016	lsm1	95	79.528	ENSCPBG00000006569	LSM1	86	79.528	Chrysemys_picta_bellii
ENSKMAG00000003016	lsm1	99	62.879	ENSCING00000013536	-	100	62.121	Ciona_intestinalis
ENSKMAG00000003016	lsm1	100	84.211	ENSCANG00000019173	LSM1	100	84.211	Colobus_angolensis_palliatus
ENSKMAG00000003016	lsm1	100	83.459	ENSCGRG00001024560	-	100	83.459	Cricetulus_griseus_chok1gshd
ENSKMAG00000003016	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSKMAG00000003016	lsm1	100	83.459	ENSCGRG00000006554	-	100	83.459	Cricetulus_griseus_crigri
ENSKMAG00000003016	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSKMAG00000003016	lsm1	100	96.992	ENSCSEG00000008319	lsm1	92	96.992	Cynoglossus_semilaevis
ENSKMAG00000003016	lsm1	100	99.248	ENSCSEG00000010570	lsm1	92	99.248	Cynoglossus_semilaevis
ENSKMAG00000003016	lsm1	100	98.496	ENSCVAG00000003871	lsm1	100	98.496	Cyprinodon_variegatus
ENSKMAG00000003016	lsm1	100	82.707	ENSDARG00000043177	lsm1	100	82.707	Danio_rerio
ENSKMAG00000003016	lsm1	89	65.546	ENSDNOG00000046620	-	100	65.546	Dasypus_novemcinctus
ENSKMAG00000003016	lsm1	100	84.211	ENSDNOG00000046387	-	100	84.211	Dasypus_novemcinctus
ENSKMAG00000003016	lsm1	99	79.545	ENSDNOG00000030989	-	99	79.545	Dasypus_novemcinctus
ENSKMAG00000003016	lsm1	100	83.459	ENSDNOG00000032911	-	100	83.459	Dasypus_novemcinctus
ENSKMAG00000003016	lsm1	100	84.211	ENSDORG00000028172	Lsm1	100	84.211	Dipodomys_ordii
ENSKMAG00000003016	lsm1	93	58.871	FBgn0261067	LSm1	91	58.871	Drosophila_melanogaster
ENSKMAG00000003016	lsm1	100	82.707	ENSEASG00005016677	LSM1	100	82.707	Equus_asinus_asinus
ENSKMAG00000003016	lsm1	100	82.707	ENSECAG00000010461	LSM1	100	82.707	Equus_caballus
ENSKMAG00000003016	lsm1	100	63.158	ENSEEUG00000015181	LSM1	100	63.158	Erinaceus_europaeus
ENSKMAG00000003016	lsm1	100	94.737	ENSELUG00000002322	lsm1	100	94.737	Esox_lucius
ENSKMAG00000003016	lsm1	100	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSKMAG00000003016	lsm1	100	84.211	ENSFCAG00000039335	LSM1	100	84.211	Felis_catus
ENSKMAG00000003016	lsm1	89	83.051	ENSFALG00000006723	LSM1	100	83.051	Ficedula_albicollis
ENSKMAG00000003016	lsm1	100	84.211	ENSFDAG00000007658	LSM1	100	84.211	Fukomys_damarensis
ENSKMAG00000003016	lsm1	100	98.496	ENSFHEG00000009556	lsm1	100	98.496	Fundulus_heteroclitus
ENSKMAG00000003016	lsm1	100	96.992	ENSGMOG00000016651	lsm1	98	96.992	Gadus_morhua
ENSKMAG00000003016	lsm1	100	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSKMAG00000003016	lsm1	100	98.496	ENSGAFG00000011355	lsm1	100	98.496	Gambusia_affinis
ENSKMAG00000003016	lsm1	100	97.744	ENSGACG00000011763	lsm1	98	97.744	Gasterosteus_aculeatus
ENSKMAG00000003016	lsm1	100	85.714	ENSGAGG00000024065	LSM1	100	85.714	Gopherus_agassizii
ENSKMAG00000003016	lsm1	100	84.211	ENSGGOG00000022658	LSM1	100	84.211	Gorilla_gorilla
ENSKMAG00000003016	lsm1	100	99.248	ENSHBUG00000010897	lsm1	100	99.248	Haplochromis_burtoni
ENSKMAG00000003016	lsm1	100	84.211	ENSHGLG00000005711	LSM1	100	84.211	Heterocephalus_glaber_female
ENSKMAG00000003016	lsm1	100	68.421	ENSHGLG00000017574	-	100	68.421	Heterocephalus_glaber_female
ENSKMAG00000003016	lsm1	100	68.421	ENSHGLG00100012152	-	100	68.421	Heterocephalus_glaber_male
ENSKMAG00000003016	lsm1	100	84.211	ENSHGLG00100017660	LSM1	100	84.211	Heterocephalus_glaber_male
ENSKMAG00000003016	lsm1	100	97.744	ENSHCOG00000017233	lsm1	100	97.744	Hippocampus_comes
ENSKMAG00000003016	lsm1	100	81.955	ENSIPUG00000002312	LSM1	100	81.955	Ictalurus_punctatus
ENSKMAG00000003016	lsm1	62	87.952	ENSSTOG00000026870	LSM1	100	87.952	Ictidomys_tridecemlineatus
ENSKMAG00000003016	lsm1	100	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSKMAG00000003016	lsm1	100	99.248	ENSLBEG00000022352	lsm1	100	99.248	Labrus_bergylta
ENSKMAG00000003016	lsm1	90	81.667	ENSLACG00000010947	LSM1	99	81.667	Latimeria_chalumnae
ENSKMAG00000003016	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSKMAG00000003016	lsm1	100	84.211	ENSLAFG00000003534	LSM1	100	84.211	Loxodonta_africana
ENSKMAG00000003016	lsm1	100	84.211	ENSMFAG00000032661	LSM1	100	84.211	Macaca_fascicularis
ENSKMAG00000003016	lsm1	100	84.211	ENSMLEG00000034535	LSM1	100	84.211	Mandrillus_leucophaeus
ENSKMAG00000003016	lsm1	100	99.248	ENSMAMG00000007464	lsm1	100	99.248	Mastacembelus_armatus
ENSKMAG00000003016	lsm1	100	99.248	ENSMZEG00005010321	lsm1	100	99.248	Maylandia_zebra
ENSKMAG00000003016	lsm1	100	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSKMAG00000003016	lsm1	100	84.211	ENSMICG00000030726	LSM1	100	84.211	Microcebus_murinus
ENSKMAG00000003016	lsm1	100	83.459	ENSMOCG00000022817	Lsm1	100	83.459	Microtus_ochrogaster
ENSKMAG00000003016	lsm1	100	98.496	ENSMMOG00000015466	lsm1	100	98.496	Mola_mola
ENSKMAG00000003016	lsm1	100	84.962	ENSMODG00000010732	-	100	84.962	Monodelphis_domestica
ENSKMAG00000003016	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSKMAG00000003016	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSKMAG00000003016	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	100	84.211	Mus_musculus
ENSKMAG00000003016	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSKMAG00000003016	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSKMAG00000003016	lsm1	100	84.962	ENSMPUG00000009883	LSM1	100	84.962	Mustela_putorius_furo
ENSKMAG00000003016	lsm1	100	84.211	ENSMLUG00000003734	LSM1	100	84.211	Myotis_lucifugus
ENSKMAG00000003016	lsm1	100	83.459	ENSNGAG00000003753	Lsm1	100	83.459	Nannospalax_galili
ENSKMAG00000003016	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSKMAG00000003016	lsm1	100	84.211	ENSNLEG00000029390	LSM1	100	84.211	Nomascus_leucogenys
ENSKMAG00000003016	lsm1	100	84.962	ENSMEUG00000014077	LSM1	100	84.962	Notamacropus_eugenii
ENSKMAG00000003016	lsm1	88	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSKMAG00000003016	lsm1	100	84.211	ENSODEG00000004834	LSM1	100	84.211	Octodon_degus
ENSKMAG00000003016	lsm1	100	99.248	ENSONIG00000010782	lsm1	100	99.248	Oreochromis_niloticus
ENSKMAG00000003016	lsm1	100	84.962	ENSOANG00000003256	LSM1	100	84.962	Ornithorhynchus_anatinus
ENSKMAG00000003016	lsm1	100	84.211	ENSOCUG00000015399	LSM1	100	84.211	Oryctolagus_cuniculus
ENSKMAG00000003016	lsm1	100	98.496	ENSORLG00000030288	lsm1	100	98.496	Oryzias_latipes
ENSKMAG00000003016	lsm1	100	98.496	ENSORLG00020003941	lsm1	100	98.496	Oryzias_latipes_hni
ENSKMAG00000003016	lsm1	100	96.992	ENSORLG00020006213	-	86	96.992	Oryzias_latipes_hni
ENSKMAG00000003016	lsm1	100	98.496	ENSORLG00015018350	lsm1	100	98.496	Oryzias_latipes_hsok
ENSKMAG00000003016	lsm1	100	98.496	ENSOMEG00000012454	lsm1	100	98.496	Oryzias_melastigma
ENSKMAG00000003016	lsm1	100	84.211	ENSOGAG00000015161	LSM1	100	84.211	Otolemur_garnettii
ENSKMAG00000003016	lsm1	100	84.211	ENSOARG00000001317	LSM1	100	84.211	Ovis_aries
ENSKMAG00000003016	lsm1	100	84.211	ENSPPAG00000032279	LSM1	100	84.211	Pan_paniscus
ENSKMAG00000003016	lsm1	100	84.211	ENSPPRG00000014172	-	100	84.211	Panthera_pardus
ENSKMAG00000003016	lsm1	100	84.211	ENSPTIG00000010289	LSM1	100	84.211	Panthera_tigris_altaica
ENSKMAG00000003016	lsm1	100	84.211	ENSPTRG00000020169	LSM1	100	84.211	Pan_troglodytes
ENSKMAG00000003016	lsm1	100	84.211	ENSPANG00000008814	LSM1	100	84.211	Papio_anubis
ENSKMAG00000003016	lsm1	100	87.218	ENSPKIG00000001839	lsm1	100	87.218	Paramormyrops_kingsleyae
ENSKMAG00000003016	lsm1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSKMAG00000003016	lsm1	97	80.620	ENSPSIG00000012563	LSM1	98	80.620	Pelodiscus_sinensis
ENSKMAG00000003016	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSKMAG00000003016	lsm1	85	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSKMAG00000003016	lsm1	100	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSKMAG00000003016	lsm1	100	98.496	ENSPFOG00000016029	lsm1	100	98.496	Poecilia_formosa
ENSKMAG00000003016	lsm1	100	98.496	ENSPLAG00000007879	lsm1	100	98.496	Poecilia_latipinna
ENSKMAG00000003016	lsm1	100	98.496	ENSPMEG00000023550	lsm1	100	98.496	Poecilia_mexicana
ENSKMAG00000003016	lsm1	100	98.496	ENSPREG00000009574	lsm1	100	98.496	Poecilia_reticulata
ENSKMAG00000003016	lsm1	100	84.211	ENSPPYG00000018521	LSM1	100	84.211	Pongo_abelii
ENSKMAG00000003016	lsm1	100	84.211	ENSPCOG00000020901	-	100	84.211	Propithecus_coquereli
ENSKMAG00000003016	lsm1	100	84.211	ENSPVAG00000006016	LSM1	100	84.211	Pteropus_vampyrus
ENSKMAG00000003016	lsm1	100	99.248	ENSPNYG00000018067	lsm1	100	99.248	Pundamilia_nyererei
ENSKMAG00000003016	lsm1	100	82.707	ENSPNAG00000013707	lsm1	100	82.707	Pygocentrus_nattereri
ENSKMAG00000003016	lsm1	100	82.707	ENSRNOG00000015375	Lsm1	100	82.707	Rattus_norvegicus
ENSKMAG00000003016	lsm1	100	84.211	ENSRBIG00000027449	LSM1	100	84.211	Rhinopithecus_bieti
ENSKMAG00000003016	lsm1	100	84.211	ENSRROG00000036074	LSM1	100	84.211	Rhinopithecus_roxellana
ENSKMAG00000003016	lsm1	80	44.248	YJL124C	LSM1	66	44.248	Saccharomyces_cerevisiae
ENSKMAG00000003016	lsm1	100	84.962	ENSSHAG00000017260	LSM1	100	84.962	Sarcophilus_harrisii
ENSKMAG00000003016	lsm1	100	86.466	ENSSFOG00015019528	lsm1	100	86.466	Scleropages_formosus
ENSKMAG00000003016	lsm1	100	100.000	ENSSMAG00000004930	lsm1	100	100.000	Scophthalmus_maximus
ENSKMAG00000003016	lsm1	100	98.496	ENSSDUG00000021823	lsm1	100	98.496	Seriola_dumerili
ENSKMAG00000003016	lsm1	100	98.496	ENSSLDG00000012154	lsm1	100	98.496	Seriola_lalandi_dorsalis
ENSKMAG00000003016	lsm1	100	85.714	ENSSPUG00000014878	LSM1	100	85.714	Sphenodon_punctatus
ENSKMAG00000003016	lsm1	100	99.248	ENSSPAG00000020548	lsm1	100	99.248	Stegastes_partitus
ENSKMAG00000003016	lsm1	100	84.211	ENSSSCG00000039058	LSM1	100	84.211	Sus_scrofa
ENSKMAG00000003016	lsm1	100	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSKMAG00000003016	lsm1	100	95.489	ENSTRUG00000025239	lsm1	100	95.489	Takifugu_rubripes
ENSKMAG00000003016	lsm1	100	92.481	ENSTNIG00000004055	lsm1	100	92.481	Tetraodon_nigroviridis
ENSKMAG00000003016	lsm1	88	82.051	ENSTBEG00000015884	LSM1	100	82.051	Tupaia_belangeri
ENSKMAG00000003016	lsm1	100	84.211	ENSTTRG00000004482	LSM1	100	84.211	Tursiops_truncatus
ENSKMAG00000003016	lsm1	100	84.211	ENSUAMG00000004103	LSM1	100	84.211	Ursus_americanus
ENSKMAG00000003016	lsm1	100	84.211	ENSUMAG00000009132	LSM1	100	84.211	Ursus_maritimus
ENSKMAG00000003016	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSKMAG00000003016	lsm1	61	64.198	ENSVVUG00000014880	-	86	64.198	Vulpes_vulpes
ENSKMAG00000003016	lsm1	100	84.211	ENSVVUG00000020191	LSM1	100	84.211	Vulpes_vulpes
ENSKMAG00000003016	lsm1	100	80.292	ENSXETG00000009004	lsm1	100	80.292	Xenopus_tropicalis
ENSKMAG00000003016	lsm1	100	96.992	ENSXCOG00000015631	lsm1	100	96.992	Xiphophorus_couchianus
ENSKMAG00000003016	lsm1	100	96.992	ENSXMAG00000026637	lsm1	100	96.992	Xiphophorus_maculatus