EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000003481 (Gene tree)
Gene ID: 108241580
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 18768 bases
Position: chrLWHD01000003.1:4581906-4600673
Accession: 108241580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	1	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	2	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	3	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	4	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	5	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	6	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	7	8
ENSKMAP00000004690	PUF	PF00806.19	1.8e-69	8	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	1	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	2	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	3	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	4	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	5	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	6	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	7	8
ENSKMAP00000004656	PUF	PF00806.19	1.9e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000004777	-	3480	-	ENSKMAP00000004690	1159 (aa)	-	-
ENSKMAT00000004742	-	5871	XM_017425855	ENSKMAP00000004656	1163 (aa)	XP_017281344	UPI0007F9201D

Gene Model

Click here to download ENSKMAG00000003481's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000003481's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000003481	pum1	94	90.361	ENSG00000134644	PUM1	98	90.843	Homo_sapiens
ENSKMAG00000003481	pum1	100	98.452	ENSAPOG00000021632	pum1	100	98.554	Acanthochromis_polyacanthus
ENSKMAG00000003481	pum1	100	75.825	ENSAMEG00000017656	PUM1	97	73.967	Ailuropoda_melanoleuca
ENSKMAG00000003481	pum1	100	97.764	ENSACIG00000021013	pum1	100	97.764	Amphilophus_citrinellus
ENSKMAG00000003481	pum1	100	98.452	ENSAOCG00000003944	pum1	100	98.554	Amphiprion_ocellaris
ENSKMAG00000003481	pum1	100	98.452	ENSAPEG00000014550	pum1	100	98.554	Amphiprion_percula
ENSKMAG00000003481	pum1	100	98.194	ENSATEG00000016004	pum1	100	98.554	Anabas_testudineus
ENSKMAG00000003481	pum1	100	76.783	ENSAPLG00000009351	PUM1	100	74.751	Anas_platyrhynchos
ENSKMAG00000003481	pum1	100	76.076	ENSACAG00000000682	PUM1	98	75.828	Anolis_carolinensis
ENSKMAG00000003481	pum1	100	75.723	ENSANAG00000027865	PUM1	100	80.322	Aotus_nancymaae
ENSKMAG00000003481	pum1	92	98.028	ENSACLG00000019354	pum1	100	98.028	Astatotilapia_calliptera
ENSKMAG00000003481	pum1	100	82.034	ENSAMXG00000020607	pum1	96	81.780	Astyanax_mexicanus
ENSKMAG00000003481	pum1	100	75.950	ENSBTAG00000018979	PUM1	100	80.593	Bos_taurus
ENSKMAG00000003481	pum1	100	76.053	ENSCJAG00000006035	PUM1	100	80.446	Callithrix_jacchus
ENSKMAG00000003481	pum1	93	77.838	ENSCAFG00020024616	PUM1	98	80.569	Canis_lupus_dingo
ENSKMAG00000003481	pum1	100	75.950	ENSCHIG00000012952	PUM1	100	75.887	Capra_hircus
ENSKMAG00000003481	pum1	100	75.805	ENSTSYG00000008868	PUM1	100	81.687	Carlito_syrichta
ENSKMAG00000003481	pum1	100	75.640	ENSCPOG00000031613	PUM1	100	80.198	Cavia_porcellus
ENSKMAG00000003481	pum1	94	90.843	ENSCATG00000017991	PUM1	93	91.325	Cercocebus_atys
ENSKMAG00000003481	pum1	94	90.120	ENSCLAG00000007662	PUM1	100	81.314	Chinchilla_lanigera
ENSKMAG00000003481	pum1	100	74.877	ENSCSAG00000001028	PUM1	100	73.033	Chlorocebus_sabaeus
ENSKMAG00000003481	pum1	93	65.541	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSKMAG00000003481	pum1	100	76.266	ENSCPBG00000009288	PUM1	100	80.817	Chrysemys_picta_bellii
ENSKMAG00000003481	pum1	94	90.361	ENSCANG00000042606	PUM1	100	90.843	Colobus_angolensis_palliatus
ENSKMAG00000003481	pum1	100	75.021	ENSCGRG00001024949	Pum1	100	82.077	Cricetulus_griseus_chok1gshd
ENSKMAG00000003481	pum1	100	75.021	ENSCGRG00000014197	Pum1	100	82.077	Cricetulus_griseus_crigri
ENSKMAG00000003481	pum1	92	96.157	ENSCSEG00000015981	pum1	100	96.157	Cynoglossus_semilaevis
ENSKMAG00000003481	pum1	100	97.334	ENSCVAG00000007043	pum1	100	97.334	Cyprinodon_variegatus
ENSKMAG00000003481	pum1	100	83.489	ENSDARG00000099256	pum1	100	81.017	Danio_rerio
ENSKMAG00000003481	pum1	100	76.301	ENSDNOG00000010939	PUM1	100	74.524	Dasypus_novemcinctus
ENSKMAG00000003481	pum1	90	72.526	ENSETEG00000004355	PUM1	87	70.934	Echinops_telfairi
ENSKMAG00000003481	pum1	100	75.950	ENSEASG00005010813	PUM1	100	74.007	Equus_asinus_asinus
ENSKMAG00000003481	pum1	100	75.805	ENSECAG00000021369	PUM1	100	73.863	Equus_caballus
ENSKMAG00000003481	pum1	76	90.000	ENSEEUG00000003871	PUM1	74	90.444	Erinaceus_europaeus
ENSKMAG00000003481	pum1	100	88.481	ENSELUG00000002409	pum1	100	90.678	Esox_lucius
ENSKMAG00000003481	pum1	100	75.970	ENSFCAG00000010374	PUM1	100	80.569	Felis_catus
ENSKMAG00000003481	pum1	100	76.151	ENSFALG00000001214	PUM1	97	74.300	Ficedula_albicollis
ENSKMAG00000003481	pum1	100	75.640	ENSFDAG00000011319	PUM1	100	80.198	Fukomys_damarensis
ENSKMAG00000003481	pum1	96	89.738	ENSGALG00000042598	PUM1	99	89.738	Gallus_gallus
ENSKMAG00000003481	pum1	100	98.022	ENSGAFG00000015617	pum1	100	99.036	Gambusia_affinis
ENSKMAG00000003481	pum1	99	96.207	ENSGACG00000005717	pum1	100	96.207	Gasterosteus_aculeatus
ENSKMAG00000003481	pum1	96	89.940	ENSGAGG00000001290	PUM1	99	89.940	Gopherus_agassizii
ENSKMAG00000003481	pum1	94	90.361	ENSGGOG00000011983	PUM1	100	90.843	Gorilla_gorilla
ENSKMAG00000003481	pum1	100	98.108	ENSHBUG00000018718	pum1	100	98.108	Haplochromis_burtoni
ENSKMAG00000003481	pum1	100	75.557	ENSHGLG00000013819	Pum1	100	80.074	Heterocephalus_glaber_female
ENSKMAG00000003481	pum1	100	75.557	ENSHGLG00100008621	Pum1	100	80.074	Heterocephalus_glaber_male
ENSKMAG00000003481	pum1	92	89.869	ENSHCOG00000005149	pum1	100	88.555	Hippocampus_comes
ENSKMAG00000003481	pum1	100	81.382	ENSIPUG00000020421	pum1	100	80.876	Ictalurus_punctatus
ENSKMAG00000003481	pum1	100	75.950	ENSSTOG00000010757	PUM1	100	80.446	Ictidomys_tridecemlineatus
ENSKMAG00000003481	pum1	100	75.950	ENSJJAG00000000530	Pum1	100	80.569	Jaculus_jaculus
ENSKMAG00000003481	pum1	100	96.819	ENSLBEG00000002527	pum1	100	96.819	Labrus_bergylta
ENSKMAG00000003481	pum1	100	75.725	ENSLACG00000017188	PUM1	99	72.780	Latimeria_chalumnae
ENSKMAG00000003481	pum1	100	81.500	ENSLOCG00000005210	pum1	99	80.583	Lepisosteus_oculatus
ENSKMAG00000003481	pum1	100	76.183	ENSLAFG00000003178	PUM1	100	74.564	Loxodonta_africana
ENSKMAG00000003481	pum1	94	90.843	ENSMFAG00000010291	PUM1	100	91.325	Macaca_fascicularis
ENSKMAG00000003481	pum1	94	90.361	ENSMMUG00000013520	PUM1	100	90.843	Macaca_mulatta
ENSKMAG00000003481	pum1	94	90.361	ENSMNEG00000034639	PUM1	100	90.843	Macaca_nemestrina
ENSKMAG00000003481	pum1	94	90.361	ENSMLEG00000038743	PUM1	100	90.843	Mandrillus_leucophaeus
ENSKMAG00000003481	pum1	100	97.764	ENSMAMG00000011606	pum1	100	97.764	Mastacembelus_armatus
ENSKMAG00000003481	pum1	100	98.108	ENSMZEG00005005834	pum1	100	98.108	Maylandia_zebra
ENSKMAG00000003481	pum1	100	76.694	ENSMGAG00000000724	PUM1	100	76.722	Meleagris_gallopavo
ENSKMAG00000003481	pum1	100	75.765	ENSMAUG00000022090	Pum1	100	82.426	Mesocricetus_auratus
ENSKMAG00000003481	pum1	94	89.423	ENSMICG00000012213	-	99	72.388	Microcebus_murinus
ENSKMAG00000003481	pum1	94	90.361	ENSMICG00000007713	-	100	80.322	Microcebus_murinus
ENSKMAG00000003481	pum1	100	75.207	ENSMOCG00000015463	Pum1	100	82.200	Microtus_ochrogaster
ENSKMAG00000003481	pum1	85	97.831	ENSMMOG00000019817	pum1	100	71.759	Mola_mola
ENSKMAG00000003481	pum1	100	75.973	ENSMODG00000017067	PUM1	100	74.191	Monodelphis_domestica
ENSKMAG00000003481	pum1	85	98.554	ENSMALG00000016399	pum1	100	98.554	Monopterus_albus
ENSKMAG00000003481	pum1	100	74.876	MGP_CAROLIEiJ_G0026549	Pum1	100	80.074	Mus_caroli
ENSKMAG00000003481	pum1	100	74.876	ENSMUSG00000028580	Pum1	100	79.950	Mus_musculus
ENSKMAG00000003481	pum1	100	74.793	MGP_PahariEiJ_G0028881	Pum1	100	79.950	Mus_pahari
ENSKMAG00000003481	pum1	100	75.372	MGP_SPRETEiJ_G0027529	Pum1	100	79.950	Mus_spretus
ENSKMAG00000003481	pum1	100	76.033	ENSMPUG00000015454	PUM1	100	74.007	Mustela_putorius_furo
ENSKMAG00000003481	pum1	100	75.805	ENSMLUG00000006490	PUM1	100	73.780	Myotis_lucifugus
ENSKMAG00000003481	pum1	100	75.868	ENSNGAG00000002378	Pum1	100	80.446	Nannospalax_galili
ENSKMAG00000003481	pum1	79	98.125	ENSNBRG00000010689	pum1	100	98.125	Neolamprologus_brichardi
ENSKMAG00000003481	pum1	94	87.229	ENSNLEG00000001151	PUM1	100	78.960	Nomascus_leucogenys
ENSKMAG00000003481	pum1	73	78.276	ENSMEUG00000000976	-	67	80.038	Notamacropus_eugenii
ENSKMAG00000003481	pum1	81	90.654	ENSOPRG00000001776	PUM1	70	90.654	Ochotona_princeps
ENSKMAG00000003481	pum1	100	75.702	ENSODEG00000003465	PUM1	100	80.198	Octodon_degus
ENSKMAG00000003481	pum1	100	98.452	ENSONIG00000002290	pum1	100	98.452	Oreochromis_niloticus
ENSKMAG00000003481	pum1	85	63.333	ENSOANG00000004902	-	100	61.437	Ornithorhynchus_anatinus
ENSKMAG00000003481	pum1	99	75.848	ENSOCUG00000008641	PUM1	99	73.902	Oryctolagus_cuniculus
ENSKMAG00000003481	pum1	100	97.087	ENSORLG00000011482	pum1	100	97.087	Oryzias_latipes
ENSKMAG00000003481	pum1	100	97.087	ENSORLG00020019461	pum1	100	97.087	Oryzias_latipes_hni
ENSKMAG00000003481	pum1	100	97.087	ENSORLG00015011375	pum1	100	97.087	Oryzias_latipes_hsok
ENSKMAG00000003481	pum1	87	98.313	ENSOMEG00000009312	pum1	100	98.313	Oryzias_melastigma
ENSKMAG00000003481	pum1	100	73.322	ENSOGAG00000011063	PUM1	100	71.452	Otolemur_garnettii
ENSKMAG00000003481	pum1	100	75.392	ENSOARG00000001899	PUM1	100	73.532	Ovis_aries
ENSKMAG00000003481	pum1	94	90.361	ENSPPAG00000044003	PUM1	100	90.843	Pan_paniscus
ENSKMAG00000003481	pum1	100	76.033	ENSPPRG00000001370	PUM1	100	80.569	Panthera_pardus
ENSKMAG00000003481	pum1	100	75.868	ENSPTIG00000010798	PUM1	100	80.817	Panthera_tigris_altaica
ENSKMAG00000003481	pum1	94	90.361	ENSPTRG00000000453	PUM1	100	90.843	Pan_troglodytes
ENSKMAG00000003481	pum1	94	90.843	ENSPANG00000016338	PUM1	100	91.325	Papio_anubis
ENSKMAG00000003481	pum1	95	92.289	ENSPKIG00000010578	pum1	100	76.853	Paramormyrops_kingsleyae
ENSKMAG00000003481	pum1	100	76.680	ENSPSIG00000014118	PUM1	100	74.586	Pelodiscus_sinensis
ENSKMAG00000003481	pum1	79	97.458	ENSPMGG00000005836	pum1	100	97.458	Periophthalmus_magnuspinnatus
ENSKMAG00000003481	pum1	100	75.765	ENSPEMG00000010009	Pum1	100	82.426	Peromyscus_maniculatus_bairdii
ENSKMAG00000003481	pum1	94	91.325	ENSPCIG00000014151	PUM1	100	91.084	Phascolarctos_cinereus
ENSKMAG00000003481	pum1	95	97.125	ENSPFOG00000007289	pum1	99	97.994	Poecilia_formosa
ENSKMAG00000003481	pum1	100	94.649	ENSPLAG00000007256	pum1	100	97.672	Poecilia_latipinna
ENSKMAG00000003481	pum1	92	97.199	ENSPMEG00000019543	pum1	99	97.199	Poecilia_mexicana
ENSKMAG00000003481	pum1	100	97.936	ENSPREG00000005195	pum1	100	97.936	Poecilia_reticulata
ENSKMAG00000003481	pum1	100	74.473	ENSPPYG00000001621	PUM1	100	72.646	Pongo_abelii
ENSKMAG00000003481	pum1	76	92.593	ENSPCAG00000001979	PUM1	73	92.593	Procavia_capensis
ENSKMAG00000003481	pum1	94	90.361	ENSPCOG00000004398	PUM1	100	80.322	Propithecus_coquereli
ENSKMAG00000003481	pum1	100	74.111	ENSPVAG00000005207	PUM1	97	72.245	Pteropus_vampyrus
ENSKMAG00000003481	pum1	100	98.194	ENSPNYG00000009518	pum1	100	98.194	Pundamilia_nyererei
ENSKMAG00000003481	pum1	100	82.458	ENSPNAG00000026728	pum1	100	82.248	Pygocentrus_nattereri
ENSKMAG00000003481	pum1	100	74.959	ENSRNOG00000011709	Pum1	100	73.675	Rattus_norvegicus
ENSKMAG00000003481	pum1	94	90.843	ENSRBIG00000042521	PUM1	100	91.325	Rhinopithecus_bieti
ENSKMAG00000003481	pum1	94	90.361	ENSRROG00000020156	PUM1	100	90.843	Rhinopithecus_roxellana
ENSKMAG00000003481	pum1	100	75.970	ENSSBOG00000032037	PUM1	100	80.446	Saimiri_boliviensis_boliviensis
ENSKMAG00000003481	pum1	100	76.056	ENSSHAG00000010918	PUM1	100	74.274	Sarcophilus_harrisii
ENSKMAG00000003481	pum1	100	96.733	ENSSMAG00000010918	pum1	100	98.554	Scophthalmus_maximus
ENSKMAG00000003481	pum1	100	98.366	ENSSDUG00000009021	pum1	100	98.366	Seriola_dumerili
ENSKMAG00000003481	pum1	94	98.413	ENSSLDG00000009667	pum1	100	98.413	Seriola_lalandi_dorsalis
ENSKMAG00000003481	pum1	94	79.222	ENSSARG00000003055	PUM1	91	76.726	Sorex_araneus
ENSKMAG00000003481	pum1	100	76.529	ENSSPUG00000006267	PUM1	100	74.503	Sphenodon_punctatus
ENSKMAG00000003481	pum1	100	98.538	ENSSPAG00000016636	pum1	100	98.554	Stegastes_partitus
ENSKMAG00000003481	pum1	100	88.330	ENSSSCG00000003591	PUM1	95	88.732	Sus_scrofa
ENSKMAG00000003481	pum1	100	97.248	ENSTRUG00000013121	pum1	100	98.250	Takifugu_rubripes
ENSKMAG00000003481	pum1	100	96.410	ENSTNIG00000016983	pum1	99	96.410	Tetraodon_nigroviridis
ENSKMAG00000003481	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSKMAG00000003481	pum1	93	78.617	ENSTTRG00000007436	PUM1	88	76.481	Tursiops_truncatus
ENSKMAG00000003481	pum1	99	74.141	ENSUAMG00000018262	-	100	72.101	Ursus_americanus
ENSKMAG00000003481	pum1	92	83.086	ENSVPAG00000005902	PUM1	92	80.941	Vicugna_pacos
ENSKMAG00000003481	pum1	100	75.888	ENSVVUG00000014631	PUM1	100	75.808	Vulpes_vulpes
ENSKMAG00000003481	pum1	100	72.585	ENSXETG00000012904	pum1	99	71.299	Xenopus_tropicalis
ENSKMAG00000003481	pum1	100	97.506	ENSXMAG00000002945	pum1	100	97.778	Xiphophorus_maculatus