EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000003904 (Gene tree)
Gene ID: 108241708
Gene Symbol: thoc1
Alias: p84
Full Name: THO complex 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 5105 bases
Position: chrLWHD01000089.1:778744-783848
Accession: 108241708
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000005225	efThoc1	PF11957.8	4.2e-143	1	1
ENSKMAP00000005254	efThoc1	PF11957.8	2.1e-128	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000005346	-	1953	-	ENSKMAP00000005254	650 (aa)	-	-
ENSKMAT00000005317	-	2150	XM_017426068	ENSKMAP00000005225	653 (aa)	XP_017281557	UPI0007F9374A

Gene Model

Click here to download ENSKMAG00000003904's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000003904's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000003904	thoc1	99	71.689	ENSG00000079134	THOC1	99	77.574	Homo_sapiens
ENSKMAG00000003904	thoc1	99	71.994	ENSAMEG00000006645	THOC1	99	71.994	Ailuropoda_melanoleuca
ENSKMAG00000003904	thoc1	94	89.739	ENSACIG00000019392	thoc1	95	89.739	Amphilophus_citrinellus
ENSKMAG00000003904	thoc1	100	87.920	ENSAOCG00000008391	thoc1	100	87.920	Amphiprion_ocellaris
ENSKMAG00000003904	thoc1	100	93.425	ENSAPEG00000001093	thoc1	100	93.425	Amphiprion_percula
ENSKMAG00000003904	thoc1	99	92.496	ENSATEG00000004783	thoc1	99	92.496	Anabas_testudineus
ENSKMAG00000003904	thoc1	99	69.725	ENSAPLG00000016149	THOC1	98	69.725	Anas_platyrhynchos
ENSKMAG00000003904	thoc1	99	71.494	ENSACAG00000008307	THOC1	97	70.884	Anolis_carolinensis
ENSKMAG00000003904	thoc1	99	71.084	ENSANAG00000033200	THOC1	99	71.084	Aotus_nancymaae
ENSKMAG00000003904	thoc1	100	90.979	ENSACLG00000016836	thoc1	100	90.979	Astatotilapia_calliptera
ENSKMAG00000003904	thoc1	94	75.478	ENSAMXG00000014708	thoc1	98	74.801	Astyanax_mexicanus
ENSKMAG00000003904	thoc1	99	72.298	ENSBTAG00000019215	THOC1	99	72.298	Bos_taurus
ENSKMAG00000003904	thoc1	69	35.358	WBGene00020172	thoc-1	69	35.546	Caenorhabditis_elegans
ENSKMAG00000003904	thoc1	99	71.842	ENSCJAG00000020450	THOC1	99	71.842	Callithrix_jacchus
ENSKMAG00000003904	thoc1	99	72.146	ENSCAFG00000018324	THOC1	99	72.146	Canis_familiaris
ENSKMAG00000003904	thoc1	99	72.146	ENSCAFG00020017894	THOC1	99	72.146	Canis_lupus_dingo
ENSKMAG00000003904	thoc1	99	72.298	ENSCHIG00000015399	THOC1	99	73.167	Capra_hircus
ENSKMAG00000003904	thoc1	99	71.689	ENSTSYG00000010585	THOC1	99	71.689	Carlito_syrichta
ENSKMAG00000003904	thoc1	95	55.714	ENSCAPG00000016270	THOC1	98	55.714	Cavia_aperea
ENSKMAG00000003904	thoc1	99	71.233	ENSCPOG00000000959	THOC1	99	71.233	Cavia_porcellus
ENSKMAG00000003904	thoc1	99	71.842	ENSCCAG00000025766	THOC1	99	71.842	Cebus_capucinus
ENSKMAG00000003904	thoc1	99	69.863	ENSCATG00000028180	THOC1	96	75.434	Cercocebus_atys
ENSKMAG00000003904	thoc1	97	72.699	ENSCLAG00000009117	THOC1	99	72.699	Chinchilla_lanigera
ENSKMAG00000003904	thoc1	99	71.842	ENSCSAG00000017631	THOC1	99	71.842	Chlorocebus_sabaeus
ENSKMAG00000003904	thoc1	80	74.590	ENSCHOG00000010609	THOC1	79	74.590	Choloepus_hoffmanni
ENSKMAG00000003904	thoc1	99	71.933	ENSCPBG00000027558	THOC1	99	71.933	Chrysemys_picta_bellii
ENSKMAG00000003904	thoc1	74	47.166	ENSCING00000007663	-	99	47.166	Ciona_intestinalis
ENSKMAG00000003904	thoc1	94	47.068	ENSCSAVG00000010649	-	100	47.068	Ciona_savignyi
ENSKMAG00000003904	thoc1	99	71.689	ENSCANG00000034265	THOC1	96	76.023	Colobus_angolensis_palliatus
ENSKMAG00000003904	thoc1	99	71.121	ENSCGRG00001016464	Thoc1	98	71.121	Cricetulus_griseus_chok1gshd
ENSKMAG00000003904	thoc1	98	71.163	ENSCGRG00000010269	-	99	71.969	Cricetulus_griseus_crigri
ENSKMAG00000003904	thoc1	89	59.455	ENSCGRG00000003390	-	97	59.044	Cricetulus_griseus_crigri
ENSKMAG00000003904	thoc1	99	86.778	ENSCSEG00000012486	thoc1	99	87.460	Cynoglossus_semilaevis
ENSKMAG00000003904	thoc1	100	91.437	ENSCVAG00000020600	thoc1	100	91.437	Cyprinodon_variegatus
ENSKMAG00000003904	thoc1	99	81.902	ENSDARG00000088246	thoc1	99	81.902	Danio_rerio
ENSKMAG00000003904	thoc1	99	71.799	ENSDNOG00000019217	THOC1	99	71.799	Dasypus_novemcinctus
ENSKMAG00000003904	thoc1	97	68.819	ENSDORG00000008060	Thoc1	98	67.823	Dipodomys_ordii
ENSKMAG00000003904	thoc1	99	36.377	FBgn0037382	Hpr1	76	39.964	Drosophila_melanogaster
ENSKMAG00000003904	thoc1	90	55.272	ENSETEG00000004165	THOC1	98	55.272	Echinops_telfairi
ENSKMAG00000003904	thoc1	92	62.417	ENSEBUG00000005998	thoc1	98	63.350	Eptatretus_burgeri
ENSKMAG00000003904	thoc1	99	72.104	ENSEASG00005002549	THOC1	95	72.104	Equus_asinus_asinus
ENSKMAG00000003904	thoc1	99	72.146	ENSECAG00000009267	THOC1	89	72.146	Equus_caballus
ENSKMAG00000003904	thoc1	79	59.574	ENSEEUG00000012214	-	81	59.574	Erinaceus_europaeus
ENSKMAG00000003904	thoc1	100	85.236	ENSELUG00000023277	thoc1	100	85.236	Esox_lucius
ENSKMAG00000003904	thoc1	99	72.451	ENSFCAG00000022454	THOC1	86	72.451	Felis_catus
ENSKMAG00000003904	thoc1	97	72.031	ENSFALG00000006205	THOC1	99	72.031	Ficedula_albicollis
ENSKMAG00000003904	thoc1	99	71.957	ENSFDAG00000006842	THOC1	99	71.957	Fukomys_damarensis
ENSKMAG00000003904	thoc1	100	92.049	ENSFHEG00000008841	thoc1	100	92.049	Fundulus_heteroclitus
ENSKMAG00000003904	thoc1	99	86.656	ENSGMOG00000011486	thoc1	99	86.656	Gadus_morhua
ENSKMAG00000003904	thoc1	99	71.933	ENSGALG00000014915	THOC1	99	70.152	Gallus_gallus
ENSKMAG00000003904	thoc1	100	90.979	ENSGAFG00000021464	thoc1	100	90.979	Gambusia_affinis
ENSKMAG00000003904	thoc1	100	90.826	ENSGACG00000017361	thoc1	100	90.826	Gasterosteus_aculeatus
ENSKMAG00000003904	thoc1	99	72.282	ENSGAGG00000021230	-	97	72.282	Gopherus_agassizii
ENSKMAG00000003904	thoc1	99	71.842	ENSGGOG00000003013	THOC1	99	71.842	Gorilla_gorilla
ENSKMAG00000003904	thoc1	100	91.284	ENSHBUG00000009096	thoc1	100	91.284	Haplochromis_burtoni
ENSKMAG00000003904	thoc1	99	72.298	ENSHGLG00000003712	-	99	72.298	Heterocephalus_glaber_female
ENSKMAG00000003904	thoc1	70	65.990	ENSHGLG00000009264	-	99	65.990	Heterocephalus_glaber_female
ENSKMAG00000003904	thoc1	99	72.146	ENSHGLG00100003570	THOC1	99	72.146	Heterocephalus_glaber_male
ENSKMAG00000003904	thoc1	77	59.278	ENSHGLG00100002225	-	99	59.278	Heterocephalus_glaber_male
ENSKMAG00000003904	thoc1	91	80.566	ENSIPUG00000005306	thoc1	100	79.434	Ictalurus_punctatus
ENSKMAG00000003904	thoc1	99	71.994	ENSSTOG00000006484	THOC1	99	71.994	Ictidomys_tridecemlineatus
ENSKMAG00000003904	thoc1	52	73.099	ENSJJAG00000014893	-	96	72.674	Jaculus_jaculus
ENSKMAG00000003904	thoc1	100	91.896	ENSLBEG00000020372	thoc1	98	91.896	Labrus_bergylta
ENSKMAG00000003904	thoc1	99	72.546	ENSLACG00000014869	THOC1	99	72.239	Latimeria_chalumnae
ENSKMAG00000003904	thoc1	100	82.953	ENSLOCG00000002097	thoc1	99	82.648	Lepisosteus_oculatus
ENSKMAG00000003904	thoc1	99	71.842	ENSLAFG00000009585	THOC1	99	71.842	Loxodonta_africana
ENSKMAG00000003904	thoc1	99	71.842	ENSMFAG00000041520	THOC1	99	71.842	Macaca_fascicularis
ENSKMAG00000003904	thoc1	99	71.842	ENSMMUG00000004662	THOC1	99	71.842	Macaca_mulatta
ENSKMAG00000003904	thoc1	99	71.842	ENSMNEG00000040177	THOC1	99	71.842	Macaca_nemestrina
ENSKMAG00000003904	thoc1	99	71.842	ENSMLEG00000034201	THOC1	99	71.842	Mandrillus_leucophaeus
ENSKMAG00000003904	thoc1	96	89.952	ENSMAMG00000016747	thoc1	100	89.952	Mastacembelus_armatus
ENSKMAG00000003904	thoc1	100	90.979	ENSMZEG00005024609	thoc1	100	90.979	Maylandia_zebra
ENSKMAG00000003904	thoc1	97	72.100	ENSMGAG00000009811	THOC1	99	71.160	Meleagris_gallopavo
ENSKMAG00000003904	thoc1	99	70.968	ENSMAUG00000010272	Thoc1	98	70.968	Mesocricetus_auratus
ENSKMAG00000003904	thoc1	99	71.994	ENSMICG00000027200	THOC1	99	71.994	Microcebus_murinus
ENSKMAG00000003904	thoc1	99	70.200	ENSMOCG00000014536	-	85	70.200	Microtus_ochrogaster
ENSKMAG00000003904	thoc1	99	62.212	ENSMOCG00000014924	-	95	61.846	Microtus_ochrogaster
ENSKMAG00000003904	thoc1	93	90.686	ENSMMOG00000011772	thoc1	100	90.686	Mola_mola
ENSKMAG00000003904	thoc1	99	70.015	ENSMODG00000021482	THOC1	98	70.015	Monodelphis_domestica
ENSKMAG00000003904	thoc1	99	90.505	ENSMALG00000021872	thoc1	99	90.505	Monopterus_albus
ENSKMAG00000003904	thoc1	99	70.661	MGP_CAROLIEiJ_G0021989	Thoc1	98	70.661	Mus_caroli
ENSKMAG00000003904	thoc1	99	70.814	ENSMUSG00000024287	Thoc1	98	70.814	Mus_musculus
ENSKMAG00000003904	thoc1	99	70.814	MGP_PahariEiJ_G0018726	Thoc1	98	70.814	Mus_pahari
ENSKMAG00000003904	thoc1	99	70.814	MGP_SPRETEiJ_G0022905	Thoc1	98	70.814	Mus_spretus
ENSKMAG00000003904	thoc1	99	71.994	ENSMPUG00000005448	THOC1	99	71.994	Mustela_putorius_furo
ENSKMAG00000003904	thoc1	90	65.604	ENSMLUG00000027965	-	99	64.765	Myotis_lucifugus
ENSKMAG00000003904	thoc1	61	64.912	ENSMLUG00000024912	-	100	64.160	Myotis_lucifugus
ENSKMAG00000003904	thoc1	99	71.233	ENSMLUG00000004090	-	99	71.233	Myotis_lucifugus
ENSKMAG00000003904	thoc1	99	71.537	ENSNGAG00000001401	-	99	71.537	Nannospalax_galili
ENSKMAG00000003904	thoc1	97	57.300	ENSNGAG00000008061	-	97	57.300	Nannospalax_galili
ENSKMAG00000003904	thoc1	98	89.028	ENSNBRG00000005991	thoc1	97	89.028	Neolamprologus_brichardi
ENSKMAG00000003904	thoc1	99	71.842	ENSNLEG00000006835	THOC1	99	71.842	Nomascus_leucogenys
ENSKMAG00000003904	thoc1	89	73.876	ENSMEUG00000009756	THOC1	82	73.876	Notamacropus_eugenii
ENSKMAG00000003904	thoc1	99	57.991	ENSOPRG00000001108	THOC1	99	57.991	Ochotona_princeps
ENSKMAG00000003904	thoc1	99	66.819	ENSODEG00000006623	THOC1	99	66.819	Octodon_degus
ENSKMAG00000003904	thoc1	100	91.437	ENSONIG00000009440	thoc1	99	91.437	Oreochromis_niloticus
ENSKMAG00000003904	thoc1	99	71.994	ENSOCUG00000011601	THOC1	99	71.994	Oryctolagus_cuniculus
ENSKMAG00000003904	thoc1	100	91.743	ENSORLG00000017629	thoc1	100	91.743	Oryzias_latipes
ENSKMAG00000003904	thoc1	100	91.896	ENSORLG00020007567	thoc1	100	91.896	Oryzias_latipes_hni
ENSKMAG00000003904	thoc1	100	91.896	ENSORLG00015007356	thoc1	100	91.896	Oryzias_latipes_hsok
ENSKMAG00000003904	thoc1	100	89.893	ENSOMEG00000008200	thoc1	100	90.673	Oryzias_melastigma
ENSKMAG00000003904	thoc1	99	68.798	ENSOGAG00000000470	THOC1	99	68.798	Otolemur_garnettii
ENSKMAG00000003904	thoc1	98	72.685	ENSOARG00000009238	THOC1	97	72.685	Ovis_aries
ENSKMAG00000003904	thoc1	99	71.842	ENSPPAG00000031812	THOC1	99	71.842	Pan_paniscus
ENSKMAG00000003904	thoc1	99	71.842	ENSPPRG00000023794	THOC1	96	76.744	Panthera_pardus
ENSKMAG00000003904	thoc1	99	71.842	ENSPTIG00000007469	THOC1	96	76.744	Panthera_tigris_altaica
ENSKMAG00000003904	thoc1	99	70.934	ENSPTRG00000009816	THOC1	99	70.934	Pan_troglodytes
ENSKMAG00000003904	thoc1	99	70.953	ENSPANG00000008665	THOC1	99	70.953	Papio_anubis
ENSKMAG00000003904	thoc1	100	81.193	ENSPKIG00000005906	thoc1	100	81.804	Paramormyrops_kingsleyae
ENSKMAG00000003904	thoc1	81	74.432	ENSPSIG00000007691	THOC1	97	74.432	Pelodiscus_sinensis
ENSKMAG00000003904	thoc1	94	84.677	ENSPMGG00000008279	thoc1	95	84.677	Periophthalmus_magnuspinnatus
ENSKMAG00000003904	thoc1	99	70.968	ENSPEMG00000021789	Thoc1	98	70.968	Peromyscus_maniculatus_bairdii
ENSKMAG00000003904	thoc1	74	70.961	ENSPCIG00000026942	THOC1	97	70.961	Phascolarctos_cinereus
ENSKMAG00000003904	thoc1	99	90.658	ENSPFOG00000011673	thoc1	100	90.520	Poecilia_formosa
ENSKMAG00000003904	thoc1	100	90.520	ENSPLAG00000019648	thoc1	100	90.520	Poecilia_latipinna
ENSKMAG00000003904	thoc1	99	90.812	ENSPMEG00000007083	thoc1	100	90.673	Poecilia_mexicana
ENSKMAG00000003904	thoc1	100	91.437	ENSPREG00000006719	thoc1	100	91.437	Poecilia_reticulata
ENSKMAG00000003904	thoc1	74	74.897	ENSPPYG00000009049	-	98	74.897	Pongo_abelii
ENSKMAG00000003904	thoc1	99	63.623	ENSPCAG00000005320	THOC1	91	72.878	Procavia_capensis
ENSKMAG00000003904	thoc1	99	71.233	ENSPCOG00000009234	THOC1	99	71.233	Propithecus_coquereli
ENSKMAG00000003904	thoc1	99	70.472	ENSPVAG00000004007	THOC1	99	70.472	Pteropus_vampyrus
ENSKMAG00000003904	thoc1	100	91.284	ENSPNYG00000019152	thoc1	100	91.284	Pundamilia_nyererei
ENSKMAG00000003904	thoc1	100	82.416	ENSPNAG00000023390	thoc1	100	82.110	Pygocentrus_nattereri
ENSKMAG00000003904	thoc1	88	53.913	ENSRNOG00000015332	Thoc1	94	58.993	Rattus_norvegicus
ENSKMAG00000003904	thoc1	99	71.084	ENSRBIG00000033738	THOC1	99	73.310	Rhinopithecus_bieti
ENSKMAG00000003904	thoc1	99	71.842	ENSRROG00000044988	THOC1	96	76.023	Rhinopithecus_roxellana
ENSKMAG00000003904	thoc1	99	71.537	ENSSBOG00000016556	THOC1	99	71.537	Saimiri_boliviensis_boliviensis
ENSKMAG00000003904	thoc1	99	70.968	ENSSHAG00000014829	THOC1	98	70.968	Sarcophilus_harrisii
ENSKMAG00000003904	thoc1	100	85.321	ENSSFOG00015021527	thoc1	100	85.321	Scleropages_formosus
ENSKMAG00000003904	thoc1	100	87.805	ENSSMAG00000018465	thoc1	99	87.805	Scophthalmus_maximus
ENSKMAG00000003904	thoc1	99	92.649	ENSSDUG00000016810	thoc1	100	92.508	Seriola_dumerili
ENSKMAG00000003904	thoc1	99	92.343	ENSSLDG00000015555	thoc1	100	92.202	Seriola_lalandi_dorsalis
ENSKMAG00000003904	thoc1	88	71.429	ENSSARG00000006910	THOC1	87	71.705	Sorex_araneus
ENSKMAG00000003904	thoc1	98	70.451	ENSSPUG00000007238	THOC1	98	70.154	Sphenodon_punctatus
ENSKMAG00000003904	thoc1	99	87.634	ENSSPAG00000018847	thoc1	99	87.500	Stegastes_partitus
ENSKMAG00000003904	thoc1	99	72.146	ENSSSCG00000025653	THOC1	93	72.146	Sus_scrofa
ENSKMAG00000003904	thoc1	99	72.393	ENSTGUG00000010204	THOC1	99	72.393	Taeniopygia_guttata
ENSKMAG00000003904	thoc1	99	89.587	ENSTRUG00000013518	thoc1	99	89.587	Takifugu_rubripes
ENSKMAG00000003904	thoc1	99	89.433	ENSTNIG00000008473	thoc1	99	89.433	Tetraodon_nigroviridis
ENSKMAG00000003904	thoc1	99	64.840	ENSTBEG00000016920	THOC1	99	64.840	Tupaia_belangeri
ENSKMAG00000003904	thoc1	99	66.210	ENSTTRG00000016664	THOC1	99	66.210	Tursiops_truncatus
ENSKMAG00000003904	thoc1	99	72.146	ENSUAMG00000002527	THOC1	99	72.784	Ursus_americanus
ENSKMAG00000003904	thoc1	99	72.146	ENSUMAG00000019693	THOC1	99	72.146	Ursus_maritimus
ENSKMAG00000003904	thoc1	68	65.672	ENSVPAG00000003726	-	67	66.390	Vicugna_pacos
ENSKMAG00000003904	thoc1	99	72.146	ENSVVUG00000004384	THOC1	99	72.146	Vulpes_vulpes
ENSKMAG00000003904	thoc1	99	70.274	ENSXETG00000003155	thoc1	97	70.274	Xenopus_tropicalis
ENSKMAG00000003904	thoc1	94	85.831	ENSXCOG00000016085	thoc1	89	85.831	Xiphophorus_couchianus
ENSKMAG00000003904	thoc1	100	90.826	ENSXMAG00000002353	thoc1	100	90.826	Xiphophorus_maculatus