EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000004009 (Gene tree)
Gene ID: 108238829
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 12638 bases
Position: chrLWHD01000058.1:1258922-1271559
Accession: 108238829
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000005323	SF3b1	PF08920.10	3.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000005415	-	5064	XM_017421140	ENSKMAP00000005323	1318 (aa)	XP_017276629	UPI0007F8CC37

Gene Model

Click here to download ENSKMAG00000004009's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000004009's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000004009	sf3b1	100	93.030	ENSG00000115524	SF3B1	100	93.106	Homo_sapiens
ENSKMAG00000004009	sf3b1	100	97.800	ENSAPOG00000011894	sf3b1	100	97.800	Acanthochromis_polyacanthus
ENSKMAG00000004009	sf3b1	99	92.912	ENSAMEG00000013809	SF3B1	99	92.988	Ailuropoda_melanoleuca
ENSKMAG00000004009	sf3b1	100	96.813	ENSACIG00000020910	sf3b1	97	96.813	Amphilophus_citrinellus
ENSKMAG00000004009	sf3b1	100	97.800	ENSAOCG00000004478	sf3b1	100	97.800	Amphiprion_ocellaris
ENSKMAG00000004009	sf3b1	100	97.800	ENSAPEG00000012937	sf3b1	100	97.800	Amphiprion_percula
ENSKMAG00000004009	sf3b1	100	97.800	ENSATEG00000020435	sf3b1	100	97.800	Anabas_testudineus
ENSKMAG00000004009	sf3b1	99	93.125	ENSAPLG00000003993	SF3B1	99	93.048	Anas_platyrhynchos
ENSKMAG00000004009	sf3b1	100	92.949	ENSACAG00000009612	SF3B1	100	92.873	Anolis_carolinensis
ENSKMAG00000004009	sf3b1	100	93.030	ENSANAG00000021577	SF3B1	100	94.369	Aotus_nancymaae
ENSKMAG00000004009	sf3b1	100	96.737	ENSACLG00000023470	sf3b1	100	96.737	Astatotilapia_calliptera
ENSKMAG00000004009	sf3b1	100	96.437	ENSAMXG00000002219	sf3b1	100	96.437	Astyanax_mexicanus
ENSKMAG00000004009	sf3b1	100	93.030	ENSBTAG00000008915	SF3B1	100	93.106	Bos_taurus
ENSKMAG00000004009	sf3b1	99	64.044	WBGene00011605	sftb-1	99	64.265	Caenorhabditis_elegans
ENSKMAG00000004009	sf3b1	100	93.030	ENSCJAG00000003902	SF3B1	100	93.106	Callithrix_jacchus
ENSKMAG00000004009	sf3b1	100	93.030	ENSCAFG00000010826	SF3B1	100	93.106	Canis_familiaris
ENSKMAG00000004009	sf3b1	100	93.030	ENSCAFG00020004750	SF3B1	100	93.106	Canis_lupus_dingo
ENSKMAG00000004009	sf3b1	100	93.030	ENSCHIG00000015226	SF3B1	100	93.106	Capra_hircus
ENSKMAG00000004009	sf3b1	100	92.955	ENSTSYG00000009214	SF3B1	100	93.030	Carlito_syrichta
ENSKMAG00000004009	sf3b1	99	92.857	ENSCAPG00000006547	SF3B1	99	92.933	Cavia_aperea
ENSKMAG00000004009	sf3b1	99	92.977	ENSCPOG00000009353	SF3B1	100	93.053	Cavia_porcellus
ENSKMAG00000004009	sf3b1	100	93.030	ENSCCAG00000020506	SF3B1	100	93.106	Cebus_capucinus
ENSKMAG00000004009	sf3b1	100	93.030	ENSCATG00000035735	SF3B1	100	93.106	Cercocebus_atys
ENSKMAG00000004009	sf3b1	99	92.982	ENSCLAG00000014767	SF3B1	99	93.059	Chinchilla_lanigera
ENSKMAG00000004009	sf3b1	100	93.030	ENSCSAG00000011505	SF3B1	100	93.106	Chlorocebus_sabaeus
ENSKMAG00000004009	sf3b1	76	92.360	ENSCHOG00000009860	SF3B1	76	92.360	Choloepus_hoffmanni
ENSKMAG00000004009	sf3b1	100	93.096	ENSCPBG00000021902	SF3B1	99	94.211	Chrysemys_picta_bellii
ENSKMAG00000004009	sf3b1	69	77.717	ENSCING00000002558	-	100	77.826	Ciona_intestinalis
ENSKMAG00000004009	sf3b1	99	80.045	ENSCSAVG00000002559	-	99	80.120	Ciona_savignyi
ENSKMAG00000004009	sf3b1	100	93.030	ENSCANG00000029415	SF3B1	100	93.106	Colobus_angolensis_palliatus
ENSKMAG00000004009	sf3b1	100	93.030	ENSCGRG00001016990	Sf3b1	100	93.106	Cricetulus_griseus_chok1gshd
ENSKMAG00000004009	sf3b1	100	93.030	ENSCGRG00000005301	Sf3b1	100	93.106	Cricetulus_griseus_crigri
ENSKMAG00000004009	sf3b1	100	93.096	ENSCSEG00000003860	sf3b1	100	93.096	Cynoglossus_semilaevis
ENSKMAG00000004009	sf3b1	96	97.553	ENSCVAG00000003680	sf3b1	99	97.553	Cyprinodon_variegatus
ENSKMAG00000004009	sf3b1	100	95.375	ENSDARG00000056138	sf3b1	100	95.375	Danio_rerio
ENSKMAG00000004009	sf3b1	100	92.960	ENSDNOG00000011754	SF3B1	100	93.036	Dasypus_novemcinctus
ENSKMAG00000004009	sf3b1	99	91.069	ENSDORG00000002399	Sf3b1	100	90.992	Dipodomys_ordii
ENSKMAG00000004009	sf3b1	100	75.587	FBgn0031266	Sf3b1	100	75.806	Drosophila_melanogaster
ENSKMAG00000004009	sf3b1	83	91.682	ENSETEG00000009188	SF3B1	100	91.773	Echinops_telfairi
ENSKMAG00000004009	sf3b1	99	85.475	ENSEBUG00000004325	sf3b1	100	88.240	Eptatretus_burgeri
ENSKMAG00000004009	sf3b1	100	92.955	ENSEASG00005020159	SF3B1	98	93.030	Equus_asinus_asinus
ENSKMAG00000004009	sf3b1	100	92.955	ENSECAG00000021657	SF3B1	98	93.030	Equus_caballus
ENSKMAG00000004009	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSKMAG00000004009	sf3b1	100	95.852	ENSELUG00000005977	sf3b1	98	95.852	Esox_lucius
ENSKMAG00000004009	sf3b1	100	93.030	ENSFCAG00000005038	SF3B1	100	93.106	Felis_catus
ENSKMAG00000004009	sf3b1	99	93.048	ENSFALG00000004281	SF3B1	99	92.972	Ficedula_albicollis
ENSKMAG00000004009	sf3b1	100	93.030	ENSFDAG00000017510	SF3B1	100	93.106	Fukomys_damarensis
ENSKMAG00000004009	sf3b1	100	96.967	ENSFHEG00000014333	sf3b1	100	96.967	Fundulus_heteroclitus
ENSKMAG00000004009	sf3b1	100	95.079	ENSGMOG00000006773	sf3b1	100	95.534	Gadus_morhua
ENSKMAG00000004009	sf3b1	100	93.171	ENSGALG00000008038	SF3B1	100	93.096	Gallus_gallus
ENSKMAG00000004009	sf3b1	98	97.844	ENSGAFG00000000704	sf3b1	100	97.844	Gambusia_affinis
ENSKMAG00000004009	sf3b1	100	96.212	ENSGACG00000008839	sf3b1	100	96.212	Gasterosteus_aculeatus
ENSKMAG00000004009	sf3b1	100	92.464	ENSGAGG00000017478	SF3B1	100	92.389	Gopherus_agassizii
ENSKMAG00000004009	sf3b1	99	87.786	ENSGGOG00000009264	SF3B1	99	88.168	Gorilla_gorilla
ENSKMAG00000004009	sf3b1	99	96.809	ENSHBUG00000007705	sf3b1	99	96.809	Haplochromis_burtoni
ENSKMAG00000004009	sf3b1	99	92.982	ENSHGLG00000008285	-	99	93.059	Heterocephalus_glaber_female
ENSKMAG00000004009	sf3b1	99	90.999	ENSHGLG00100005535	-	99	91.076	Heterocephalus_glaber_male
ENSKMAG00000004009	sf3b1	100	96.823	ENSHCOG00000016775	sf3b1	100	96.823	Hippocampus_comes
ENSKMAG00000004009	sf3b1	100	96.282	ENSIPUG00000013171	sf3b1	100	96.282	Ictalurus_punctatus
ENSKMAG00000004009	sf3b1	100	93.030	ENSSTOG00000011034	SF3B1	100	93.106	Ictidomys_tridecemlineatus
ENSKMAG00000004009	sf3b1	99	92.956	ENSJJAG00000010903	Sf3b1	99	93.032	Jaculus_jaculus
ENSKMAG00000004009	sf3b1	100	96.510	ENSLBEG00000022208	sf3b1	100	96.510	Labrus_bergylta
ENSKMAG00000004009	sf3b1	99	90.646	ENSLACG00000014832	SF3B1	99	90.646	Latimeria_chalumnae
ENSKMAG00000004009	sf3b1	100	94.566	ENSLOCG00000003899	sf3b1	100	94.566	Lepisosteus_oculatus
ENSKMAG00000004009	sf3b1	100	93.030	ENSLAFG00000001956	SF3B1	100	93.106	Loxodonta_africana
ENSKMAG00000004009	sf3b1	99	92.982	ENSMMUG00000022430	SF3B1	99	93.059	Macaca_mulatta
ENSKMAG00000004009	sf3b1	100	93.030	ENSMNEG00000042333	SF3B1	100	94.369	Macaca_nemestrina
ENSKMAG00000004009	sf3b1	94	88.325	ENSMLEG00000026141	SF3B1	99	88.437	Mandrillus_leucophaeus
ENSKMAG00000004009	sf3b1	100	97.724	ENSMAMG00000010241	sf3b1	100	97.724	Mastacembelus_armatus
ENSKMAG00000004009	sf3b1	100	96.737	ENSMZEG00005021254	sf3b1	100	96.737	Maylandia_zebra
ENSKMAG00000004009	sf3b1	99	92.513	ENSMGAG00000007017	SF3B1	99	92.437	Meleagris_gallopavo
ENSKMAG00000004009	sf3b1	99	88.787	ENSMAUG00000009071	Sf3b1	99	88.863	Mesocricetus_auratus
ENSKMAG00000004009	sf3b1	100	93.030	ENSMICG00000013879	SF3B1	100	93.106	Microcebus_murinus
ENSKMAG00000004009	sf3b1	99	88.643	ENSMOCG00000000455	Sf3b1	99	88.643	Microtus_ochrogaster
ENSKMAG00000004009	sf3b1	84	96.827	ENSMMOG00000000475	sf3b1	100	96.827	Mola_mola
ENSKMAG00000004009	sf3b1	100	92.500	ENSMODG00000012275	SF3B1	100	92.500	Monodelphis_domestica
ENSKMAG00000004009	sf3b1	100	97.496	ENSMALG00000017211	sf3b1	100	97.496	Monopterus_albus
ENSKMAG00000004009	sf3b1	100	93.030	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.106	Mus_caroli
ENSKMAG00000004009	sf3b1	100	93.030	ENSMUSG00000025982	Sf3b1	100	93.106	Mus_musculus
ENSKMAG00000004009	sf3b1	100	93.030	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.106	Mus_spretus
ENSKMAG00000004009	sf3b1	100	93.030	ENSMPUG00000007799	SF3B1	100	93.106	Mustela_putorius_furo
ENSKMAG00000004009	sf3b1	100	91.894	ENSMLUG00000000840	SF3B1	100	91.970	Myotis_lucifugus
ENSKMAG00000004009	sf3b1	99	92.705	ENSNGAG00000021884	-	100	92.781	Nannospalax_galili
ENSKMAG00000004009	sf3b1	100	92.191	ENSNBRG00000015816	sf3b1	100	92.191	Neolamprologus_brichardi
ENSKMAG00000004009	sf3b1	100	93.030	ENSNLEG00000006861	SF3B1	100	93.106	Nomascus_leucogenys
ENSKMAG00000004009	sf3b1	69	99.717	ENSMEUG00000015848	-	67	99.717	Notamacropus_eugenii
ENSKMAG00000004009	sf3b1	100	80.504	ENSOPRG00000008596	SF3B1	100	80.726	Ochotona_princeps
ENSKMAG00000004009	sf3b1	100	93.030	ENSODEG00000011153	-	100	93.106	Octodon_degus
ENSKMAG00000004009	sf3b1	100	96.737	ENSONIG00000013758	sf3b1	100	96.737	Oreochromis_niloticus
ENSKMAG00000004009	sf3b1	82	95.849	ENSOCUG00000012722	-	96	95.849	Oryctolagus_cuniculus
ENSKMAG00000004009	sf3b1	100	96.889	ENSORLG00000020219	sf3b1	100	96.889	Oryzias_latipes
ENSKMAG00000004009	sf3b1	100	96.889	ENSORLG00020001746	sf3b1	100	96.889	Oryzias_latipes_hni
ENSKMAG00000004009	sf3b1	64	94.923	ENSORLG00015001759	sf3b1	98	94.923	Oryzias_latipes_hsok
ENSKMAG00000004009	sf3b1	100	97.043	ENSOMEG00000019231	sf3b1	100	97.043	Oryzias_melastigma
ENSKMAG00000004009	sf3b1	100	93.030	ENSOARG00000015374	SF3B1	100	93.106	Ovis_aries
ENSKMAG00000004009	sf3b1	100	93.030	ENSPPAG00000035007	SF3B1	100	93.106	Pan_paniscus
ENSKMAG00000004009	sf3b1	100	93.030	ENSPPRG00000009090	SF3B1	100	93.106	Panthera_pardus
ENSKMAG00000004009	sf3b1	100	93.030	ENSPTIG00000021557	SF3B1	100	93.106	Panthera_tigris_altaica
ENSKMAG00000004009	sf3b1	99	85.845	ENSPTRG00000012771	SF3B1	99	85.921	Pan_troglodytes
ENSKMAG00000004009	sf3b1	100	93.030	ENSPANG00000013417	SF3B1	100	93.106	Papio_anubis
ENSKMAG00000004009	sf3b1	100	95.148	ENSPKIG00000000784	sf3b1	100	95.072	Paramormyrops_kingsleyae
ENSKMAG00000004009	sf3b1	99	91.972	ENSPSIG00000017222	SF3B1	98	91.896	Pelodiscus_sinensis
ENSKMAG00000004009	sf3b1	91	96.653	ENSPMGG00000004330	sf3b1	99	96.653	Periophthalmus_magnuspinnatus
ENSKMAG00000004009	sf3b1	99	92.982	ENSPEMG00000010699	Sf3b1	100	93.059	Peromyscus_maniculatus_bairdii
ENSKMAG00000004009	sf3b1	100	88.169	ENSPMAG00000001311	sf3b1	100	88.395	Petromyzon_marinus
ENSKMAG00000004009	sf3b1	100	92.500	ENSPCIG00000010642	SF3B1	100	92.500	Phascolarctos_cinereus
ENSKMAG00000004009	sf3b1	100	97.803	ENSPFOG00000000073	sf3b1	100	97.803	Poecilia_formosa
ENSKMAG00000004009	sf3b1	100	97.877	ENSPLAG00000002293	sf3b1	100	97.877	Poecilia_latipinna
ENSKMAG00000004009	sf3b1	100	97.877	ENSPMEG00000000446	sf3b1	98	97.877	Poecilia_mexicana
ENSKMAG00000004009	sf3b1	100	97.953	ENSPREG00000019652	sf3b1	100	97.953	Poecilia_reticulata
ENSKMAG00000004009	sf3b1	83	96.239	ENSPPYG00000013044	SF3B1	100	96.239	Pongo_abelii
ENSKMAG00000004009	sf3b1	100	92.879	ENSPCAG00000009292	SF3B1	100	92.955	Procavia_capensis
ENSKMAG00000004009	sf3b1	100	93.030	ENSPCOG00000024074	SF3B1	100	93.106	Propithecus_coquereli
ENSKMAG00000004009	sf3b1	100	93.030	ENSPVAG00000008302	SF3B1	100	93.106	Pteropus_vampyrus
ENSKMAG00000004009	sf3b1	100	96.662	ENSPNYG00000014939	sf3b1	100	96.662	Pundamilia_nyererei
ENSKMAG00000004009	sf3b1	100	96.133	ENSPNAG00000008288	sf3b1	100	96.133	Pygocentrus_nattereri
ENSKMAG00000004009	sf3b1	100	93.030	ENSRNOG00000013516	Sf3b1	100	93.106	Rattus_norvegicus
ENSKMAG00000004009	sf3b1	99	89.302	ENSRBIG00000026096	SF3B1	100	89.378	Rhinopithecus_bieti
ENSKMAG00000004009	sf3b1	100	93.030	ENSRROG00000031308	SF3B1	100	93.106	Rhinopithecus_roxellana
ENSKMAG00000004009	sf3b1	100	93.030	ENSSBOG00000020080	SF3B1	100	93.106	Saimiri_boliviensis_boliviensis
ENSKMAG00000004009	sf3b1	100	92.500	ENSSHAG00000017564	SF3B1	100	92.500	Sarcophilus_harrisii
ENSKMAG00000004009	sf3b1	100	95.675	ENSSFOG00015021535	sf3b1	100	95.675	Scleropages_formosus
ENSKMAG00000004009	sf3b1	99	97.420	ENSSMAG00000013977	sf3b1	99	97.420	Scophthalmus_maximus
ENSKMAG00000004009	sf3b1	100	97.648	ENSSDUG00000017422	sf3b1	100	97.648	Seriola_dumerili
ENSKMAG00000004009	sf3b1	100	97.572	ENSSLDG00000019495	sf3b1	100	97.572	Seriola_lalandi_dorsalis
ENSKMAG00000004009	sf3b1	75	98.768	ENSSARG00000007016	SF3B1	76	98.768	Sorex_araneus
ENSKMAG00000004009	sf3b1	100	92.868	ENSSPUG00000000410	SF3B1	100	92.792	Sphenodon_punctatus
ENSKMAG00000004009	sf3b1	100	97.724	ENSSPAG00000010451	sf3b1	99	97.724	Stegastes_partitus
ENSKMAG00000004009	sf3b1	91	92.531	ENSSSCG00000016075	SF3B1	100	94.369	Sus_scrofa
ENSKMAG00000004009	sf3b1	100	93.171	ENSTGUG00000010553	SF3B1	100	93.096	Taeniopygia_guttata
ENSKMAG00000004009	sf3b1	100	97.193	ENSTRUG00000015534	sf3b1	100	97.193	Takifugu_rubripes
ENSKMAG00000004009	sf3b1	84	96.901	ENSTBEG00000008714	SF3B1	93	96.901	Tupaia_belangeri
ENSKMAG00000004009	sf3b1	92	93.300	ENSTTRG00000003414	SF3B1	92	93.300	Tursiops_truncatus
ENSKMAG00000004009	sf3b1	94	82.553	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSKMAG00000004009	sf3b1	100	93.030	ENSUMAG00000020945	SF3B1	100	93.106	Ursus_maritimus
ENSKMAG00000004009	sf3b1	95	93.268	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSKMAG00000004009	sf3b1	100	93.030	ENSVVUG00000025948	SF3B1	95	93.106	Vulpes_vulpes
ENSKMAG00000004009	sf3b1	100	91.364	ENSXETG00000013339	sf3b1	100	91.439	Xenopus_tropicalis
ENSKMAG00000004009	sf3b1	100	93.328	ENSXCOG00000018086	sf3b1	100	93.632	Xiphophorus_couchianus
ENSKMAG00000004009	sf3b1	100	97.726	ENSXMAG00000007369	sf3b1	100	97.726	Xiphophorus_maculatus