EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000004381 (Gene tree)
Gene ID: 108232515
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 5760 bases
Position: chrLWHD01000016.1:3664198-3669957
Accession: 108232515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000005765	Smg4_UPF3	PF03467.15	8.3e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000005865	-	2397	XM_017410376	ENSKMAP00000005765	464 (aa)	XP_017265865	UPI0007F934C2

Gene Model

Click here to download ENSKMAG00000004381's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000004381's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000004381	upf3a	88	56.813	ENSG00000169062	UPF3A	91	57.044	Homo_sapiens
ENSKMAG00000004381	upf3a	100	94.181	ENSAPOG00000013484	upf3a	100	94.181	Acanthochromis_polyacanthus
ENSKMAG00000004381	upf3a	88	57.442	ENSAMEG00000004259	UPF3A	94	56.381	Ailuropoda_melanoleuca
ENSKMAG00000004381	upf3a	98	89.099	ENSACIG00000020468	upf3a	99	89.099	Amphilophus_citrinellus
ENSKMAG00000004381	upf3a	62	60.526	ENSAOCG00000000706	upf3b	94	53.196	Amphiprion_ocellaris
ENSKMAG00000004381	upf3a	100	94.828	ENSAOCG00000020784	upf3a	100	94.828	Amphiprion_ocellaris
ENSKMAG00000004381	upf3a	100	94.828	ENSAPEG00000003519	upf3a	100	94.828	Amphiprion_percula
ENSKMAG00000004381	upf3a	100	92.672	ENSATEG00000005843	upf3a	100	92.672	Anabas_testudineus
ENSKMAG00000004381	upf3a	82	67.424	ENSACAG00000001540	UPF3A	94	67.424	Anolis_carolinensis
ENSKMAG00000004381	upf3a	92	53.564	ENSANAG00000021713	UPF3A	98	53.191	Aotus_nancymaae
ENSKMAG00000004381	upf3a	83	46.635	ENSANAG00000025598	-	71	66.667	Aotus_nancymaae
ENSKMAG00000004381	upf3a	82	51.961	ENSANAG00000021894	-	77	69.697	Aotus_nancymaae
ENSKMAG00000004381	upf3a	100	90.041	ENSACLG00000026274	upf3a	100	90.041	Astatotilapia_calliptera
ENSKMAG00000004381	upf3a	99	80.994	ENSAMXG00000002608	upf3a	100	80.994	Astyanax_mexicanus
ENSKMAG00000004381	upf3a	82	51.961	ENSCJAG00000004975	UPF3B	77	69.091	Callithrix_jacchus
ENSKMAG00000004381	upf3a	91	55.405	ENSCJAG00000019102	UPF3A	92	55.631	Callithrix_jacchus
ENSKMAG00000004381	upf3a	91	54.267	ENSCAFG00000006504	UPF3A	98	52.298	Canis_familiaris
ENSKMAG00000004381	upf3a	91	54.585	ENSCAFG00020014268	UPF3A	96	52.620	Canis_lupus_dingo
ENSKMAG00000004381	upf3a	84	46.569	ENSCAFG00020004074	UPF3B	70	71.233	Canis_lupus_dingo
ENSKMAG00000004381	upf3a	82	45.952	ENSCHIG00000018011	-	53	70.122	Capra_hircus
ENSKMAG00000004381	upf3a	88	54.503	ENSCHIG00000008682	UPF3A	85	54.503	Capra_hircus
ENSKMAG00000004381	upf3a	82	51.589	ENSTSYG00000014690	UPF3B	76	64.706	Carlito_syrichta
ENSKMAG00000004381	upf3a	75	53.989	ENSTSYG00000001918	UPF3A	99	53.723	Carlito_syrichta
ENSKMAG00000004381	upf3a	76	57.065	ENSCPOG00000006824	UPF3A	85	57.065	Cavia_porcellus
ENSKMAG00000004381	upf3a	92	55.224	ENSCCAG00000018406	UPF3A	99	55.021	Cebus_capucinus
ENSKMAG00000004381	upf3a	81	38.601	ENSCCAG00000029813	-	52	58.861	Cebus_capucinus
ENSKMAG00000004381	upf3a	91	56.570	ENSCATG00000029733	UPF3A	93	58.124	Cercocebus_atys
ENSKMAG00000004381	upf3a	91	55.973	ENSCSAG00000017388	UPF3A	93	57.500	Chlorocebus_sabaeus
ENSKMAG00000004381	upf3a	80	59.249	ENSCGRG00001017387	Upf3a	87	58.445	Cricetulus_griseus_chok1gshd
ENSKMAG00000004381	upf3a	80	59.249	ENSCGRG00000001468	Upf3a	87	58.445	Cricetulus_griseus_crigri
ENSKMAG00000004381	upf3a	99	89.417	ENSCSEG00000005106	upf3a	99	89.417	Cynoglossus_semilaevis
ENSKMAG00000004381	upf3a	100	88.172	ENSCVAG00000022333	upf3a	100	88.172	Cyprinodon_variegatus
ENSKMAG00000004381	upf3a	84	41.892	ENSCVAG00000005030	upf3b	89	42.615	Cyprinodon_variegatus
ENSKMAG00000004381	upf3a	99	79.310	ENSDARG00000069297	upf3a	100	79.310	Danio_rerio
ENSKMAG00000004381	upf3a	80	61.869	ENSDNOG00000034391	UPF3A	89	61.869	Dasypus_novemcinctus
ENSKMAG00000004381	upf3a	90	52.735	ENSETEG00000010110	UPF3A	94	52.954	Echinops_telfairi
ENSKMAG00000004381	upf3a	82	48.750	ENSEASG00005012919	UPF3B	69	68.116	Equus_asinus_asinus
ENSKMAG00000004381	upf3a	90	55.580	ENSEASG00005021884	UPF3A	93	55.580	Equus_asinus_asinus
ENSKMAG00000004381	upf3a	82	48.750	ENSECAG00000016947	UPF3B	69	61.429	Equus_caballus
ENSKMAG00000004381	upf3a	88	56.751	ENSECAG00000017141	UPF3A	93	55.361	Equus_caballus
ENSKMAG00000004381	upf3a	98	82.468	ENSELUG00000011050	upf3a	99	82.289	Esox_lucius
ENSKMAG00000004381	upf3a	88	58.486	ENSFCAG00000014602	UPF3A	92	57.528	Felis_catus
ENSKMAG00000004381	upf3a	69	79.755	ENSGMOG00000019615	upf3a	100	77.745	Gadus_morhua
ENSKMAG00000004381	upf3a	100	89.677	ENSGAFG00000021170	upf3a	100	89.677	Gambusia_affinis
ENSKMAG00000004381	upf3a	85	44.844	ENSGAFG00000000829	upf3b	91	44.131	Gambusia_affinis
ENSKMAG00000004381	upf3a	79	50.374	ENSGACG00000017435	upf3b	62	69.643	Gasterosteus_aculeatus
ENSKMAG00000004381	upf3a	69	82.243	ENSGACG00000001972	upf3a	100	82.243	Gasterosteus_aculeatus
ENSKMAG00000004381	upf3a	80	48.936	ENSGGOG00000041219	-	87	45.692	Gorilla_gorilla
ENSKMAG00000004381	upf3a	81	48.320	ENSGGOG00000043074	-	82	46.056	Gorilla_gorilla
ENSKMAG00000004381	upf3a	88	57.547	ENSGGOG00000015428	UPF3A	91	57.275	Gorilla_gorilla
ENSKMAG00000004381	upf3a	100	93.319	ENSHBUG00000011325	upf3a	99	93.521	Haplochromis_burtoni
ENSKMAG00000004381	upf3a	82	53.807	ENSHGLG00000001544	UPF3A	93	54.061	Heterocephalus_glaber_female
ENSKMAG00000004381	upf3a	82	53.807	ENSHGLG00100013244	UPF3A	93	54.061	Heterocephalus_glaber_male
ENSKMAG00000004381	upf3a	94	80.499	ENSHCOG00000013985	upf3a	94	80.952	Hippocampus_comes
ENSKMAG00000004381	upf3a	99	79.310	ENSIPUG00000023450	upf3a	100	79.310	Ictalurus_punctatus
ENSKMAG00000004381	upf3a	98	86.184	ENSLBEG00000021570	upf3a	100	85.371	Labrus_bergylta
ENSKMAG00000004381	upf3a	60	42.815	ENSLACG00000006645	UPF3A	67	87.500	Latimeria_chalumnae
ENSKMAG00000004381	upf3a	97	74.130	ENSLOCG00000002665	upf3a	98	74.130	Lepisosteus_oculatus
ENSKMAG00000004381	upf3a	91	55.034	ENSMFAG00000045016	UPF3A	93	55.505	Macaca_fascicularis
ENSKMAG00000004381	upf3a	89	56.279	ENSMMUG00000007449	UPF3A	90	58.213	Macaca_mulatta
ENSKMAG00000004381	upf3a	81	60.892	ENSMNEG00000036402	UPF3A	80	60.622	Macaca_nemestrina
ENSKMAG00000004381	upf3a	81	60.367	ENSMLEG00000014726	UPF3A	91	59.744	Mandrillus_leucophaeus
ENSKMAG00000004381	upf3a	100	88.958	ENSMAMG00000018364	upf3a	100	88.958	Mastacembelus_armatus
ENSKMAG00000004381	upf3a	100	90.041	ENSMZEG00005021571	upf3a	100	90.041	Maylandia_zebra
ENSKMAG00000004381	upf3a	85	64.146	ENSMGAG00000014837	UPF3A	99	64.146	Meleagris_gallopavo
ENSKMAG00000004381	upf3a	58	67.870	ENSMOCG00000000550	Upf3a	56	69.849	Microtus_ochrogaster
ENSKMAG00000004381	upf3a	100	86.694	ENSMMOG00000019751	upf3a	100	86.694	Mola_mola
ENSKMAG00000004381	upf3a	85	66.748	ENSMODG00000003159	UPF3A	95	67.726	Monodelphis_domestica
ENSKMAG00000004381	upf3a	81	58.915	MGP_CAROLIEiJ_G0030848	Upf3a	91	56.158	Mus_caroli
ENSKMAG00000004381	upf3a	82	58.291	ENSMUSG00000038398	Upf3a	92	57.500	Mus_musculus
ENSKMAG00000004381	upf3a	80	61.214	MGP_PahariEiJ_G0021311	Upf3a	87	60.367	Mus_pahari
ENSKMAG00000004381	upf3a	82	58.291	MGP_SPRETEiJ_G0031958	Upf3a	92	58.291	Mus_spretus
ENSKMAG00000004381	upf3a	91	55.556	ENSMPUG00000009139	UPF3A	94	54.684	Mustela_putorius_furo
ENSKMAG00000004381	upf3a	80	61.282	ENSMLUG00000015905	UPF3A	92	61.538	Myotis_lucifugus
ENSKMAG00000004381	upf3a	84	55.335	ENSNGAG00000019314	Upf3a	95	55.335	Nannospalax_galili
ENSKMAG00000004381	upf3a	100	93.534	ENSNBRG00000000828	upf3a	100	93.534	Neolamprologus_brichardi
ENSKMAG00000004381	upf3a	90	57.309	ENSNLEG00000007563	UPF3A	92	57.273	Nomascus_leucogenys
ENSKMAG00000004381	upf3a	83	50.121	ENSODEG00000002186	-	50	54.717	Octodon_degus
ENSKMAG00000004381	upf3a	100	92.719	ENSONIG00000006817	upf3a	100	92.719	Oreochromis_niloticus
ENSKMAG00000004381	upf3a	77	56.403	ENSOANG00000006985	-	95	56.948	Ornithorhynchus_anatinus
ENSKMAG00000004381	upf3a	100	85.684	ENSORLG00000010911	upf3a	100	85.684	Oryzias_latipes
ENSKMAG00000004381	upf3a	100	84.914	ENSORLG00020014317	upf3a	100	84.914	Oryzias_latipes_hni
ENSKMAG00000004381	upf3a	86	41.629	ENSORLG00020003758	upf3b	53	67.320	Oryzias_latipes_hni
ENSKMAG00000004381	upf3a	100	85.776	ENSORLG00015017339	upf3a	58	85.776	Oryzias_latipes_hsok
ENSKMAG00000004381	upf3a	100	88.147	ENSOMEG00000014425	upf3a	100	88.147	Oryzias_melastigma
ENSKMAG00000004381	upf3a	74	61.264	ENSOGAG00000004788	UPF3A	88	59.673	Otolemur_garnettii
ENSKMAG00000004381	upf3a	83	57.500	ENSOARG00000009004	UPF3A	84	57.500	Ovis_aries
ENSKMAG00000004381	upf3a	88	56.351	ENSPPAG00000042267	UPF3A	91	57.044	Pan_paniscus
ENSKMAG00000004381	upf3a	88	58.257	ENSPPRG00000025062	UPF3A	92	57.303	Panthera_pardus
ENSKMAG00000004381	upf3a	88	56.351	ENSPTRG00000006073	UPF3A	91	57.044	Pan_troglodytes
ENSKMAG00000004381	upf3a	82	47.120	ENSPTRG00000041187	-	87	43.864	Pan_troglodytes
ENSKMAG00000004381	upf3a	82	44.246	ENSPTRG00000051640	-	87	42.455	Pan_troglodytes
ENSKMAG00000004381	upf3a	82	47.382	ENSPTRG00000041835	-	87	43.717	Pan_troglodytes
ENSKMAG00000004381	upf3a	90	57.432	ENSPANG00000004346	UPF3A	93	58.352	Papio_anubis
ENSKMAG00000004381	upf3a	88	75.604	ENSPKIG00000004422	upf3a	94	70.870	Paramormyrops_kingsleyae
ENSKMAG00000004381	upf3a	89	50.783	ENSPKIG00000019226	upf3b	88	68.750	Paramormyrops_kingsleyae
ENSKMAG00000004381	upf3a	83	68.514	ENSPSIG00000007468	UPF3A	96	68.514	Pelodiscus_sinensis
ENSKMAG00000004381	upf3a	100	82.062	ENSPMGG00000012696	upf3a	100	82.062	Periophthalmus_magnuspinnatus
ENSKMAG00000004381	upf3a	80	59.946	ENSPEMG00000019968	-	87	59.946	Peromyscus_maniculatus_bairdii
ENSKMAG00000004381	upf3a	73	70.044	ENSPCIG00000019590	-	90	68.599	Phascolarctos_cinereus
ENSKMAG00000004381	upf3a	100	90.302	ENSPFOG00000013222	upf3a	100	90.302	Poecilia_formosa
ENSKMAG00000004381	upf3a	98	89.083	ENSPLAG00000011960	upf3a	100	89.083	Poecilia_latipinna
ENSKMAG00000004381	upf3a	100	86.157	ENSPMEG00000000836	upf3a	100	86.157	Poecilia_mexicana
ENSKMAG00000004381	upf3a	90	56.264	ENSPPYG00000005536	UPF3A	92	56.492	Pongo_abelii
ENSKMAG00000004381	upf3a	57	60.674	ENSPCAG00000013124	UPF3A	57	60.370	Procavia_capensis
ENSKMAG00000004381	upf3a	85	46.081	ENSPCOG00000021960	UPF3B	51	70.122	Propithecus_coquereli
ENSKMAG00000004381	upf3a	82	57.908	ENSPVAG00000005656	UPF3A	81	57.908	Pteropus_vampyrus
ENSKMAG00000004381	upf3a	100	90.041	ENSPNYG00000011289	upf3a	100	90.041	Pundamilia_nyererei
ENSKMAG00000004381	upf3a	99	80.562	ENSPNAG00000019532	upf3a	100	80.562	Pygocentrus_nattereri
ENSKMAG00000004381	upf3a	83	51.185	ENSPNAG00000021528	upf3b	54	73.006	Pygocentrus_nattereri
ENSKMAG00000004381	upf3a	71	62.952	ENSRNOG00000017397	Upf3a	81	62.952	Rattus_norvegicus
ENSKMAG00000004381	upf3a	84	59.694	ENSRBIG00000034007	UPF3A	91	58.911	Rhinopithecus_bieti
ENSKMAG00000004381	upf3a	81	60.526	ENSRROG00000012212	UPF3A	83	59.897	Rhinopithecus_roxellana
ENSKMAG00000004381	upf3a	82	51.961	ENSSBOG00000019740	UPF3B	78	70.552	Saimiri_boliviensis_boliviensis
ENSKMAG00000004381	upf3a	75	56.825	ENSSBOG00000029989	UPF3A	92	50.450	Saimiri_boliviensis_boliviensis
ENSKMAG00000004381	upf3a	85	66.748	ENSSHAG00000009895	UPF3A	96	67.726	Sarcophilus_harrisii
ENSKMAG00000004381	upf3a	99	70.043	ENSSFOG00015021851	upf3a	100	70.043	Scleropages_formosus
ENSKMAG00000004381	upf3a	52	66.932	ENSSMAG00000012913	upf3b	53	73.006	Scophthalmus_maximus
ENSKMAG00000004381	upf3a	100	82.520	ENSSMAG00000003858	upf3a	100	83.740	Scophthalmus_maximus
ENSKMAG00000004381	upf3a	100	90.417	ENSSDUG00000009680	upf3a	100	90.417	Seriola_dumerili
ENSKMAG00000004381	upf3a	100	93.534	ENSSLDG00000009700	upf3a	100	93.534	Seriola_lalandi_dorsalis
ENSKMAG00000004381	upf3a	79	49.086	ENSSARG00000007262	UPF3A	92	47.781	Sorex_araneus
ENSKMAG00000004381	upf3a	100	94.397	ENSSPAG00000007938	upf3a	100	94.397	Stegastes_partitus
ENSKMAG00000004381	upf3a	81	58.312	ENSSSCG00000024679	UPF3A	78	58.312	Sus_scrofa
ENSKMAG00000004381	upf3a	82	68.434	ENSTGUG00000009493	UPF3A	99	68.434	Taeniopygia_guttata
ENSKMAG00000004381	upf3a	98	83.956	ENSTRUG00000012730	upf3a	99	83.772	Takifugu_rubripes
ENSKMAG00000004381	upf3a	83	76.203	ENSTNIG00000014973	upf3a	100	75.696	Tetraodon_nigroviridis
ENSKMAG00000004381	upf3a	72	55.714	ENSTTRG00000015414	UPF3A	73	56.000	Tursiops_truncatus
ENSKMAG00000004381	upf3a	82	46.633	ENSUAMG00000024565	UPF3B	69	66.667	Ursus_americanus
ENSKMAG00000004381	upf3a	81	58.869	ENSVPAG00000003525	UPF3A	95	58.869	Vicugna_pacos
ENSKMAG00000004381	upf3a	83	56.675	ENSVVUG00000013538	UPF3A	87	53.089	Vulpes_vulpes
ENSKMAG00000004381	upf3a	84	46.569	ENSVVUG00000011594	UPF3B	81	67.816	Vulpes_vulpes
ENSKMAG00000004381	upf3a	81	46.867	ENSXETG00000007440	upf3b	71	71.779	Xenopus_tropicalis
ENSKMAG00000004381	upf3a	90	55.944	ENSXETG00000002572	upf3a	100	55.944	Xenopus_tropicalis
ENSKMAG00000004381	upf3a	85	43.914	ENSXMAG00000013680	upf3b	91	43.662	Xiphophorus_maculatus
ENSKMAG00000004381	upf3a	100	90.323	ENSXMAG00000013452	upf3a	100	90.323	Xiphophorus_maculatus