EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000004900 (Gene tree)
Gene ID: 108228776
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 10718 bases
Position: chrLWHD01001543.1:5538-16255
Accession: 108228776
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000006508	EST1	PF10374.9	2e-21	1	1
ENSKMAP00000006508	EST1_DNA_bind	PF10373.9	9.4e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000006616	-	3243	XM_017404390	ENSKMAP00000006508	1080 (aa)	XP_017259879	-

Gene Model

Click here to download ENSKMAG00000004900's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000004900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000004900	smg7	97	70.500	ENSG00000116698	SMG7	72	93.182	Homo_sapiens
ENSKMAG00000004900	smg7	90	83.756	ENSAPOG00000009611	smg7	95	83.756	Acanthochromis_polyacanthus
ENSKMAG00000004900	smg7	100	61.984	ENSAMEG00000002357	SMG7	97	61.316	Ailuropoda_melanoleuca
ENSKMAG00000004900	smg7	99	78.088	ENSACIG00000015152	smg7	100	78.179	Amphilophus_citrinellus
ENSKMAG00000004900	smg7	99	90.196	ENSAOCG00000013538	smg7	91	90.196	Amphiprion_ocellaris
ENSKMAG00000004900	smg7	100	83.007	ENSAPEG00000007851	smg7	91	90.196	Amphiprion_percula
ENSKMAG00000004900	smg7	100	81.656	ENSATEG00000006931	smg7	97	82.012	Anabas_testudineus
ENSKMAG00000004900	smg7	100	61.248	ENSAPLG00000015811	SMG7	97	61.033	Anas_platyrhynchos
ENSKMAG00000004900	smg7	96	71.500	ENSACAG00000014989	SMG7	88	72.000	Anolis_carolinensis
ENSKMAG00000004900	smg7	100	62.292	ENSANAG00000028114	SMG7	72	93.182	Aotus_nancymaae
ENSKMAG00000004900	smg7	98	85.644	ENSACLG00000022079	smg7	97	80.071	Astatotilapia_calliptera
ENSKMAG00000004900	smg7	100	70.599	ENSAMXG00000020809	smg7	97	70.599	Astyanax_mexicanus
ENSKMAG00000004900	smg7	100	62.511	ENSBTAG00000008003	SMG7	97	62.248	Bos_taurus
ENSKMAG00000004900	smg7	96	70.500	ENSCJAG00000005135	SMG7	72	93.182	Callithrix_jacchus
ENSKMAG00000004900	smg7	100	58.749	ENSCAFG00000013276	SMG7	95	57.917	Canis_familiaris
ENSKMAG00000004900	smg7	100	62.084	ENSCAFG00020015475	SMG7	72	93.182	Canis_lupus_dingo
ENSKMAG00000004900	smg7	100	59.492	ENSCHIG00000018192	SMG7	97	59.237	Capra_hircus
ENSKMAG00000004900	smg7	97	70.000	ENSTSYG00000002667	SMG7	78	84.211	Carlito_syrichta
ENSKMAG00000004900	smg7	100	58.833	ENSCPOG00000008906	SMG7	97	58.002	Cavia_porcellus
ENSKMAG00000004900	smg7	100	62.467	ENSCCAG00000028596	SMG7	72	93.182	Cebus_capucinus
ENSKMAG00000004900	smg7	97	70.500	ENSCATG00000011063	SMG7	72	93.182	Cercocebus_atys
ENSKMAG00000004900	smg7	96	70.000	ENSCLAG00000010751	SMG7	97	62.072	Chinchilla_lanigera
ENSKMAG00000004900	smg7	97	71.000	ENSCSAG00000012654	SMG7	87	71.000	Chlorocebus_sabaeus
ENSKMAG00000004900	smg7	91	64.242	ENSCHOG00000010522	SMG7	86	64.242	Choloepus_hoffmanni
ENSKMAG00000004900	smg7	96	70.000	ENSCPBG00000015724	SMG7	97	62.226	Chrysemys_picta_bellii
ENSKMAG00000004900	smg7	96	70.500	ENSCANG00000015680	SMG7	72	93.182	Colobus_angolensis_palliatus
ENSKMAG00000004900	smg7	97	69.000	ENSCGRG00001013705	Smg7	90	69.000	Cricetulus_griseus_chok1gshd
ENSKMAG00000004900	smg7	97	69.000	ENSCGRG00000018401	Smg7	98	61.491	Cricetulus_griseus_crigri
ENSKMAG00000004900	smg7	100	80.889	ENSCVAG00000011842	smg7	93	89.109	Cyprinodon_variegatus
ENSKMAG00000004900	smg7	100	70.777	ENSDARG00000060767	smg7	97	70.688	Danio_rerio
ENSKMAG00000004900	smg7	100	58.586	ENSDORG00000007331	Smg7	97	58.206	Dipodomys_ordii
ENSKMAG00000004900	smg7	97	54.688	ENSETEG00000002654	SMG7	89	65.644	Echinops_telfairi
ENSKMAG00000004900	smg7	100	59.175	ENSEASG00005006524	SMG7	97	58.953	Equus_asinus_asinus
ENSKMAG00000004900	smg7	93	79.935	ENSECAG00000004313	SMG7	94	79.100	Equus_caballus
ENSKMAG00000004900	smg7	94	66.258	ENSEEUG00000002024	SMG7	91	58.304	Erinaceus_europaeus
ENSKMAG00000004900	smg7	100	69.140	ENSELUG00000010293	smg7	94	74.928	Esox_lucius
ENSKMAG00000004900	smg7	100	60.847	ENSFCAG00000010900	SMG7	99	59.243	Felis_catus
ENSKMAG00000004900	smg7	100	59.037	ENSFDAG00000012121	SMG7	98	58.559	Fukomys_damarensis
ENSKMAG00000004900	smg7	100	80.573	ENSFHEG00000011073	smg7	97	80.304	Fundulus_heteroclitus
ENSKMAG00000004900	smg7	88	73.861	ENSGMOG00000004916	smg7	87	73.663	Gadus_morhua
ENSKMAG00000004900	smg7	100	61.437	ENSGALG00000004667	SMG7	97	61.559	Gallus_gallus
ENSKMAG00000004900	smg7	100	79.946	ENSGAFG00000019000	smg7	97	79.821	Gambusia_affinis
ENSKMAG00000004900	smg7	97	75.207	ENSGACG00000001634	smg7	97	74.317	Gasterosteus_aculeatus
ENSKMAG00000004900	smg7	97	70.000	ENSGGOG00000002342	SMG7	93	70.000	Gorilla_gorilla
ENSKMAG00000004900	smg7	98	86.139	ENSHBUG00000003726	smg7	91	86.139	Haplochromis_burtoni
ENSKMAG00000004900	smg7	100	62.424	ENSHGLG00000009353	SMG7	97	62.335	Heterocephalus_glaber_female
ENSKMAG00000004900	smg7	96	59.000	ENSHGLG00100004878	-	88	57.277	Heterocephalus_glaber_male
ENSKMAG00000004900	smg7	100	62.337	ENSHGLG00100009637	-	97	62.248	Heterocephalus_glaber_male
ENSKMAG00000004900	smg7	99	78.431	ENSIPUG00000016997	smg7	91	78.431	Ictalurus_punctatus
ENSKMAG00000004900	smg7	97	70.500	ENSSTOG00000000401	SMG7	90	70.500	Ictidomys_tridecemlineatus
ENSKMAG00000004900	smg7	96	70.000	ENSJJAG00000012351	Smg7	97	58.489	Jaculus_jaculus
ENSKMAG00000004900	smg7	100	81.210	ENSLBEG00000002983	smg7	97	81.662	Labrus_bergylta
ENSKMAG00000004900	smg7	54	71.547	ENSLBEG00000005220	-	75	70.383	Labrus_bergylta
ENSKMAG00000004900	smg7	97	72.500	ENSLACG00000000972	SMG7	97	62.261	Latimeria_chalumnae
ENSKMAG00000004900	smg7	98	75.362	ENSLOCG00000002010	smg7	90	75.362	Lepisosteus_oculatus
ENSKMAG00000004900	smg7	97	69.500	ENSLAFG00000008186	SMG7	89	69.500	Loxodonta_africana
ENSKMAG00000004900	smg7	97	70.500	ENSMFAG00000031653	SMG7	72	93.182	Macaca_fascicularis
ENSKMAG00000004900	smg7	97	70.500	ENSMMUG00000018458	SMG7	97	62.423	Macaca_mulatta
ENSKMAG00000004900	smg7	96	70.500	ENSMNEG00000034798	SMG7	72	93.182	Macaca_nemestrina
ENSKMAG00000004900	smg7	97	70.500	ENSMLEG00000037170	SMG7	93	70.500	Mandrillus_leucophaeus
ENSKMAG00000004900	smg7	86	83.871	ENSMAMG00000018733	smg7	82	79.918	Mastacembelus_armatus
ENSKMAG00000004900	smg7	98	85.644	ENSMZEG00005015247	smg7	97	80.071	Maylandia_zebra
ENSKMAG00000004900	smg7	99	61.194	ENSMGAG00000001561	SMG7	97	61.228	Meleagris_gallopavo
ENSKMAG00000004900	smg7	97	70.000	ENSMAUG00000019484	Smg7	90	70.000	Mesocricetus_auratus
ENSKMAG00000004900	smg7	97	70.000	ENSMICG00000007145	SMG7	69	93.182	Microcebus_murinus
ENSKMAG00000004900	smg7	97	69.000	ENSMOCG00000020748	Smg7	90	69.000	Microtus_ochrogaster
ENSKMAG00000004900	smg7	100	78.237	ENSMMOG00000001524	smg7	97	77.968	Mola_mola
ENSKMAG00000004900	smg7	92	62.239	ENSMODG00000007139	SMG7	96	62.095	Monodelphis_domestica
ENSKMAG00000004900	smg7	100	81.737	ENSMALG00000000061	smg7	91	81.932	Monopterus_albus
ENSKMAG00000004900	smg7	97	69.500	MGP_CAROLIEiJ_G0014704	Smg7	90	69.500	Mus_caroli
ENSKMAG00000004900	smg7	97	69.500	ENSMUSG00000042772	Smg7	90	69.500	Mus_musculus
ENSKMAG00000004900	smg7	97	69.500	MGP_PahariEiJ_G0027940	Smg7	90	69.500	Mus_pahari
ENSKMAG00000004900	smg7	97	69.500	MGP_SPRETEiJ_G0015511	Smg7	90	69.500	Mus_spretus
ENSKMAG00000004900	smg7	100	58.390	ENSMPUG00000011732	SMG7	96	57.748	Mustela_putorius_furo
ENSKMAG00000004900	smg7	100	59.068	ENSMLUG00000015417	SMG7	97	58.814	Myotis_lucifugus
ENSKMAG00000004900	smg7	97	67.500	ENSNGAG00000009836	Smg7	97	60.789	Nannospalax_galili
ENSKMAG00000004900	smg7	100	76.655	ENSNBRG00000024343	smg7	98	76.122	Neolamprologus_brichardi
ENSKMAG00000004900	smg7	97	70.500	ENSNLEG00000018018	SMG7	93	70.500	Nomascus_leucogenys
ENSKMAG00000004900	smg7	56	98.571	ENSMEUG00000004681	SMG7	64	98.571	Notamacropus_eugenii
ENSKMAG00000004900	smg7	97	54.354	ENSOPRG00000013942	SMG7	93	54.756	Ochotona_princeps
ENSKMAG00000004900	smg7	100	62.162	ENSODEG00000010390	SMG7	97	62.072	Octodon_degus
ENSKMAG00000004900	smg7	100	81.339	ENSONIG00000000277	smg7	97	80.250	Oreochromis_niloticus
ENSKMAG00000004900	smg7	97	69.500	ENSOANG00000000994	SMG7	91	70.000	Ornithorhynchus_anatinus
ENSKMAG00000004900	smg7	100	56.889	ENSOCUG00000005887	SMG7	90	56.805	Oryctolagus_cuniculus
ENSKMAG00000004900	smg7	100	75.856	ENSORLG00000007314	smg7	97	75.586	Oryzias_latipes
ENSKMAG00000004900	smg7	100	75.946	ENSORLG00020015779	smg7	97	75.676	Oryzias_latipes_hni
ENSKMAG00000004900	smg7	100	75.946	ENSORLG00015012289	smg7	97	75.586	Oryzias_latipes_hsok
ENSKMAG00000004900	smg7	100	72.845	ENSOMEG00000002328	smg7	97	72.328	Oryzias_melastigma
ENSKMAG00000004900	smg7	94	65.031	ENSOGAG00000003107	SMG7	84	65.031	Otolemur_garnettii
ENSKMAG00000004900	smg7	100	61.728	ENSOARG00000001352	SMG7	99	61.464	Ovis_aries
ENSKMAG00000004900	smg7	96	70.500	ENSPPAG00000031619	SMG7	72	93.182	Pan_paniscus
ENSKMAG00000004900	smg7	100	62.160	ENSPPRG00000011222	SMG7	97	61.491	Panthera_pardus
ENSKMAG00000004900	smg7	99	59.643	ENSPTIG00000007242	SMG7	100	58.998	Panthera_tigris_altaica
ENSKMAG00000004900	smg7	96	70.500	ENSPTRG00000001764	SMG7	72	93.182	Pan_troglodytes
ENSKMAG00000004900	smg7	97	70.500	ENSPANG00000004520	SMG7	97	62.423	Papio_anubis
ENSKMAG00000004900	smg7	100	64.960	ENSPKIG00000007242	smg7	97	65.049	Paramormyrops_kingsleyae
ENSKMAG00000004900	smg7	96	70.000	ENSPSIG00000012201	SMG7	99	61.276	Pelodiscus_sinensis
ENSKMAG00000004900	smg7	74	49.574	ENSPMGG00000021833	smg7	97	49.082	Periophthalmus_magnuspinnatus
ENSKMAG00000004900	smg7	97	69.500	ENSPEMG00000011315	Smg7	90	69.500	Peromyscus_maniculatus_bairdii
ENSKMAG00000004900	smg7	97	72.000	ENSPCIG00000003786	SMG7	71	95.312	Phascolarctos_cinereus
ENSKMAG00000004900	smg7	100	78.590	ENSPFOG00000019219	smg7	97	78.504	Poecilia_formosa
ENSKMAG00000004900	smg7	100	81.794	ENSPLAG00000001446	smg7	97	81.794	Poecilia_latipinna
ENSKMAG00000004900	smg7	97	81.262	ENSPMEG00000005218	smg7	97	81.169	Poecilia_mexicana
ENSKMAG00000004900	smg7	87	75.645	ENSPREG00000019039	smg7	88	74.923	Poecilia_reticulata
ENSKMAG00000004900	smg7	100	62.511	ENSPPYG00000000427	SMG7	97	62.423	Pongo_abelii
ENSKMAG00000004900	smg7	81	64.967	ENSPCAG00000008360	SMG7	85	64.523	Procavia_capensis
ENSKMAG00000004900	smg7	97	70.500	ENSPCOG00000011996	SMG7	65	93.182	Propithecus_coquereli
ENSKMAG00000004900	smg7	88	73.786	ENSPVAG00000000851	SMG7	80	68.966	Pteropus_vampyrus
ENSKMAG00000004900	smg7	98	86.500	ENSPNYG00000007643	smg7	91	86.500	Pundamilia_nyererei
ENSKMAG00000004900	smg7	100	70.667	ENSPNAG00000011374	smg7	91	77.670	Pygocentrus_nattereri
ENSKMAG00000004900	smg7	97	69.154	ENSRNOG00000027962	Smg7	93	69.154	Rattus_norvegicus
ENSKMAG00000004900	smg7	97	70.500	ENSRBIG00000036316	SMG7	93	70.500	Rhinopithecus_bieti
ENSKMAG00000004900	smg7	97	70.500	ENSRROG00000035719	SMG7	93	70.500	Rhinopithecus_roxellana
ENSKMAG00000004900	smg7	96	70.000	ENSSBOG00000023454	SMG7	72	93.182	Saimiri_boliviensis_boliviensis
ENSKMAG00000004900	smg7	100	62.555	ENSSHAG00000013147	SMG7	97	62.368	Sarcophilus_harrisii
ENSKMAG00000004900	smg7	96	78.462	ENSSFOG00015017252	smg7	98	68.218	Scleropages_formosus
ENSKMAG00000004900	smg7	100	79.155	ENSSMAG00000006067	smg7	100	76.965	Scophthalmus_maximus
ENSKMAG00000004900	smg7	100	82.447	ENSSDUG00000017543	smg7	97	82.801	Seriola_dumerili
ENSKMAG00000004900	smg7	100	61.674	ENSSPUG00000002064	SMG7	97	61.322	Sphenodon_punctatus
ENSKMAG00000004900	smg7	100	82.406	ENSSPAG00000008733	smg7	97	81.688	Stegastes_partitus
ENSKMAG00000004900	smg7	100	61.464	ENSSSCG00000015558	SMG7	97	61.199	Sus_scrofa
ENSKMAG00000004900	smg7	100	61.930	ENSTGUG00000003928	SMG7	98	61.963	Taeniopygia_guttata
ENSKMAG00000004900	smg7	100	66.442	ENSTNIG00000002802	smg7	97	65.850	Tetraodon_nigroviridis
ENSKMAG00000004900	smg7	74	65.644	ENSTBEG00000003220	SMG7	58	65.031	Tupaia_belangeri
ENSKMAG00000004900	smg7	97	58.355	ENSTTRG00000014778	SMG7	91	58.093	Tursiops_truncatus
ENSKMAG00000004900	smg7	99	60.657	ENSUAMG00000017473	SMG7	100	59.982	Ursus_americanus
ENSKMAG00000004900	smg7	96	70.000	ENSUMAG00000016389	SMG7	100	59.982	Ursus_maritimus
ENSKMAG00000004900	smg7	100	60.847	ENSVVUG00000008976	SMG7	97	60.176	Vulpes_vulpes
ENSKMAG00000004900	smg7	100	56.342	ENSXETG00000012528	smg7	97	56.514	Xenopus_tropicalis
ENSKMAG00000004900	smg7	100	81.272	ENSXMAG00000007123	smg7	97	80.914	Xiphophorus_maculatus