EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000004962 (Gene tree)
Gene ID: 108234349
Gene Symbol: upf1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 8747 bases
Position: chrLWHD01000026.1:618772-627518
Accession: 108234349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000006632	UPF1_Zn_bind	PF09416.10	1.5e-74	1	1
ENSKMAP00000006602	UPF1_Zn_bind	PF09416.10	1.5e-74	1	1
ENSKMAP00000006632	ResIII	PF04851.15	2.8e-05	1	1
ENSKMAP00000006602	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000006710	-	3542	XM_017413486	ENSKMAP00000006602	1101 (aa)	XP_017268975	UPI0007F8A02E
ENSKMAT00000006740	-	3273	-	ENSKMAP00000006632	1090 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000004962's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000004962's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000004962	upf1	100	92.596	ENSG00000005007	UPF1	100	92.685	Homo_sapiens
ENSKMAG00000004962	upf1	100	92.857	ENSAPOG00000023773	upf1	100	92.857	Acanthochromis_polyacanthus
ENSKMAG00000004962	upf1	100	98.819	ENSAPOG00000010916	-	100	98.819	Acanthochromis_polyacanthus
ENSKMAG00000004962	upf1	100	91.925	ENSAMEG00000011474	UPF1	100	92.014	Ailuropoda_melanoleuca
ENSKMAG00000004962	upf1	100	93.006	ENSACIG00000019949	upf1	100	93.006	Amphilophus_citrinellus
ENSKMAG00000004962	upf1	93	98.053	ENSACIG00000010985	-	100	98.053	Amphilophus_citrinellus
ENSKMAG00000004962	upf1	100	92.371	ENSAOCG00000018519	upf1	100	92.832	Amphiprion_ocellaris
ENSKMAG00000004962	upf1	100	98.728	ENSAOCG00000006352	-	100	98.728	Amphiprion_ocellaris
ENSKMAG00000004962	upf1	100	92.371	ENSAPEG00000016344	upf1	100	92.832	Amphiprion_percula
ENSKMAG00000004962	upf1	100	98.638	ENSAPEG00000006292	-	100	98.638	Amphiprion_percula
ENSKMAG00000004962	upf1	100	98.728	ENSATEG00000016606	-	100	98.728	Anabas_testudineus
ENSKMAG00000004962	upf1	100	91.324	ENSATEG00000017867	upf1	100	91.719	Anabas_testudineus
ENSKMAG00000004962	upf1	95	93.939	ENSAPLG00000009175	UPF1	100	93.939	Anas_platyrhynchos
ENSKMAG00000004962	upf1	95	92.593	ENSANAG00000024107	UPF1	95	92.593	Aotus_nancymaae
ENSKMAG00000004962	upf1	100	98.457	ENSACLG00000022630	-	100	98.457	Astatotilapia_calliptera
ENSKMAG00000004962	upf1	100	92.916	ENSACLG00000007181	upf1	100	92.916	Astatotilapia_calliptera
ENSKMAG00000004962	upf1	100	94.379	ENSAMXG00000042187	upf1	100	93.926	Astyanax_mexicanus
ENSKMAG00000004962	upf1	100	91.940	ENSBTAG00000020922	UPF1	100	92.028	Bos_taurus
ENSKMAG00000004962	upf1	97	49.493	WBGene00004880	smg-2	99	49.267	Caenorhabditis_elegans
ENSKMAG00000004962	upf1	100	91.696	ENSCJAG00000019627	UPF1	100	91.784	Callithrix_jacchus
ENSKMAG00000004962	upf1	100	91.696	ENSCAFG00000014578	UPF1	100	91.784	Canis_familiaris
ENSKMAG00000004962	upf1	100	92.596	ENSCAFG00020012347	UPF1	100	92.685	Canis_lupus_dingo
ENSKMAG00000004962	upf1	100	92.844	ENSCHIG00000011018	UPF1	100	92.934	Capra_hircus
ENSKMAG00000004962	upf1	95	93.732	ENSTSYG00000008877	UPF1	98	93.732	Carlito_syrichta
ENSKMAG00000004962	upf1	96	92.958	ENSCAPG00000005758	UPF1	95	93.637	Cavia_aperea
ENSKMAG00000004962	upf1	100	92.812	ENSCPOG00000025463	UPF1	100	92.812	Cavia_porcellus
ENSKMAG00000004962	upf1	100	92.596	ENSCCAG00000032175	UPF1	100	92.685	Cebus_capucinus
ENSKMAG00000004962	upf1	94	94.179	ENSCATG00000040306	UPF1	97	94.179	Cercocebus_atys
ENSKMAG00000004962	upf1	95	93.922	ENSCLAG00000004037	UPF1	99	93.922	Chinchilla_lanigera
ENSKMAG00000004962	upf1	100	92.596	ENSCSAG00000005276	UPF1	100	92.685	Chlorocebus_sabaeus
ENSKMAG00000004962	upf1	100	92.646	ENSCPBG00000012513	UPF1	100	92.646	Chrysemys_picta_bellii
ENSKMAG00000004962	upf1	77	79.391	ENSCING00000021399	-	99	78.429	Ciona_intestinalis
ENSKMAG00000004962	upf1	99	72.956	ENSCSAVG00000006533	-	99	73.226	Ciona_savignyi
ENSKMAG00000004962	upf1	95	93.922	ENSCANG00000029819	UPF1	97	93.922	Colobus_angolensis_palliatus
ENSKMAG00000004962	upf1	100	92.384	ENSCGRG00001021067	Upf1	100	92.473	Cricetulus_griseus_chok1gshd
ENSKMAG00000004962	upf1	95	93.257	ENSCGRG00000013480	Upf1	98	93.257	Cricetulus_griseus_crigri
ENSKMAG00000004962	upf1	100	87.851	ENSCSEG00000017239	upf1	100	87.523	Cynoglossus_semilaevis
ENSKMAG00000004962	upf1	100	97.820	ENSCSEG00000016159	-	100	97.820	Cynoglossus_semilaevis
ENSKMAG00000004962	upf1	100	98.728	ENSCVAG00000010561	upf1	100	98.728	Cyprinodon_variegatus
ENSKMAG00000004962	upf1	100	93.926	ENSDARG00000016302	upf1	100	94.198	Danio_rerio
ENSKMAG00000004962	upf1	95	91.453	ENSDORG00000009984	Upf1	95	91.453	Dipodomys_ordii
ENSKMAG00000004962	upf1	86	71.324	FBgn0030354	Upf1	81	70.954	Drosophila_melanogaster
ENSKMAG00000004962	upf1	55	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSKMAG00000004962	upf1	100	92.755	ENSEASG00005006549	UPF1	100	92.844	Equus_asinus_asinus
ENSKMAG00000004962	upf1	100	92.755	ENSECAG00000010639	UPF1	100	92.844	Equus_caballus
ENSKMAG00000004962	upf1	100	92.148	ENSELUG00000020917	upf1	100	91.787	Esox_lucius
ENSKMAG00000004962	upf1	100	94.950	ENSELUG00000012916	-	100	94.950	Esox_lucius
ENSKMAG00000004962	upf1	100	91.608	ENSFCAG00000009757	UPF1	100	91.696	Felis_catus
ENSKMAG00000004962	upf1	95	94.471	ENSFALG00000009312	UPF1	96	94.471	Ficedula_albicollis
ENSKMAG00000004962	upf1	95	93.827	ENSFDAG00000014816	UPF1	99	93.827	Fukomys_damarensis
ENSKMAG00000004962	upf1	100	89.257	ENSFHEG00000006428	upf1	100	88.909	Fundulus_heteroclitus
ENSKMAG00000004962	upf1	87	98.556	ENSFHEG00000016276	-	96	98.556	Fundulus_heteroclitus
ENSKMAG00000004962	upf1	100	94.519	ENSGMOG00000007541	upf1	100	94.519	Gadus_morhua
ENSKMAG00000004962	upf1	100	92.583	ENSGALG00000003220	UPF1	100	92.583	Gallus_gallus
ENSKMAG00000004962	upf1	64	92.556	ENSGAFG00000015443	-	88	92.050	Gambusia_affinis
ENSKMAG00000004962	upf1	100	98.728	ENSGAFG00000004831	upf1	100	98.728	Gambusia_affinis
ENSKMAG00000004962	upf1	100	93.153	ENSGAGG00000022217	UPF1	100	93.243	Gopherus_agassizii
ENSKMAG00000004962	upf1	95	94.914	ENSGGOG00000002608	UPF1	99	94.914	Gorilla_gorilla
ENSKMAG00000004962	upf1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSKMAG00000004962	upf1	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSKMAG00000004962	upf1	100	91.431	ENSHGLG00000010900	UPF1	100	91.519	Heterocephalus_glaber_female
ENSKMAG00000004962	upf1	95	92.023	ENSHGLG00100005904	UPF1	96	92.023	Heterocephalus_glaber_male
ENSKMAG00000004962	upf1	100	97.641	ENSHCOG00000008918	upf1	100	97.641	Hippocampus_comes
ENSKMAG00000004962	upf1	100	94.379	ENSIPUG00000005108	UPF1	100	93.926	Ictalurus_punctatus
ENSKMAG00000004962	upf1	100	92.596	ENSSTOG00000009196	UPF1	100	92.685	Ictidomys_tridecemlineatus
ENSKMAG00000004962	upf1	100	91.467	ENSJJAG00000023151	Upf1	100	91.556	Jaculus_jaculus
ENSKMAG00000004962	upf1	100	98.004	ENSLBEG00000027848	-	100	98.004	Labrus_bergylta
ENSKMAG00000004962	upf1	100	91.308	ENSLBEG00000014862	upf1	100	91.935	Labrus_bergylta
ENSKMAG00000004962	upf1	63	94.556	ENSLACG00000008482	UPF1	100	94.556	Latimeria_chalumnae
ENSKMAG00000004962	upf1	100	95.550	ENSLOCG00000002072	upf1	100	95.550	Lepisosteus_oculatus
ENSKMAG00000004962	upf1	100	91.239	ENSLAFG00000014963	UPF1	100	91.327	Loxodonta_africana
ENSKMAG00000004962	upf1	100	92.349	ENSMFAG00000037748	UPF1	100	92.438	Macaca_fascicularis
ENSKMAG00000004962	upf1	100	92.103	ENSMMUG00000023286	UPF1	100	92.192	Macaca_mulatta
ENSKMAG00000004962	upf1	100	92.349	ENSMNEG00000000046	UPF1	100	92.438	Macaca_nemestrina
ENSKMAG00000004962	upf1	95	93.922	ENSMLEG00000028404	UPF1	99	93.922	Mandrillus_leucophaeus
ENSKMAG00000004962	upf1	100	98.185	ENSMAMG00000006231	-	100	98.185	Mastacembelus_armatus
ENSKMAG00000004962	upf1	100	91.592	ENSMAMG00000006229	upf1	100	92.218	Mastacembelus_armatus
ENSKMAG00000004962	upf1	100	91.914	ENSMZEG00005003489	upf1	100	92.183	Maylandia_zebra
ENSKMAG00000004962	upf1	100	98.457	ENSMZEG00005016386	-	100	98.457	Maylandia_zebra
ENSKMAG00000004962	upf1	95	93.454	ENSMGAG00000004745	UPF1	100	93.454	Meleagris_gallopavo
ENSKMAG00000004962	upf1	95	93.257	ENSMAUG00000011398	Upf1	95	93.257	Mesocricetus_auratus
ENSKMAG00000004962	upf1	100	92.507	ENSMICG00000001659	UPF1	100	92.596	Microcebus_murinus
ENSKMAG00000004962	upf1	100	91.482	ENSMOCG00000005699	Upf1	100	91.659	Microtus_ochrogaster
ENSKMAG00000004962	upf1	100	91.826	ENSMMOG00000007881	upf1	100	92.196	Mola_mola
ENSKMAG00000004962	upf1	95	96.172	ENSMMOG00000007537	-	99	96.172	Mola_mola
ENSKMAG00000004962	upf1	100	91.278	ENSMODG00000003689	UPF1	100	91.454	Monodelphis_domestica
ENSKMAG00000004962	upf1	100	92.007	ENSMALG00000000144	upf1	100	92.120	Monopterus_albus
ENSKMAG00000004962	upf1	100	96.652	ENSMALG00000018100	-	100	96.652	Monopterus_albus
ENSKMAG00000004962	upf1	100	92.294	MGP_CAROLIEiJ_G0031142	Upf1	100	92.384	Mus_caroli
ENSKMAG00000004962	upf1	100	92.294	ENSMUSG00000058301	Upf1	100	92.384	Mus_musculus
ENSKMAG00000004962	upf1	100	92.294	MGP_PahariEiJ_G0021607	Upf1	100	92.384	Mus_pahari
ENSKMAG00000004962	upf1	100	92.294	MGP_SPRETEiJ_G0032260	Upf1	100	92.384	Mus_spretus
ENSKMAG00000004962	upf1	100	92.596	ENSMPUG00000015516	UPF1	100	92.685	Mustela_putorius_furo
ENSKMAG00000004962	upf1	99	92.390	ENSMLUG00000012122	UPF1	99	92.480	Myotis_lucifugus
ENSKMAG00000004962	upf1	100	91.150	ENSNGAG00000024107	Upf1	100	91.239	Nannospalax_galili
ENSKMAG00000004962	upf1	100	91.099	ENSNBRG00000000670	upf1	100	91.099	Neolamprologus_brichardi
ENSKMAG00000004962	upf1	100	94.838	ENSNBRG00000022069	-	100	97.282	Neolamprologus_brichardi
ENSKMAG00000004962	upf1	95	88.129	ENSNLEG00000006062	UPF1	99	88.129	Nomascus_leucogenys
ENSKMAG00000004962	upf1	83	88.867	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSKMAG00000004962	upf1	95	87.716	ENSOPRG00000014018	UPF1	99	87.716	Ochotona_princeps
ENSKMAG00000004962	upf1	100	92.806	ENSODEG00000012426	UPF1	100	92.806	Octodon_degus
ENSKMAG00000004962	upf1	100	98.548	ENSONIG00000012729	-	100	98.548	Oreochromis_niloticus
ENSKMAG00000004962	upf1	100	92.093	ENSONIG00000010452	upf1	100	92.363	Oreochromis_niloticus
ENSKMAG00000004962	upf1	100	91.416	ENSOANG00000004568	UPF1	100	91.327	Ornithorhynchus_anatinus
ENSKMAG00000004962	upf1	100	97.820	ENSORLG00000008453	upf1	100	97.820	Oryzias_latipes
ENSKMAG00000004962	upf1	100	97.731	ENSORLG00020014758	upf1	100	97.731	Oryzias_latipes_hni
ENSKMAG00000004962	upf1	100	97.731	ENSORLG00015010165	upf1	100	97.731	Oryzias_latipes_hsok
ENSKMAG00000004962	upf1	100	98.093	ENSOMEG00000003665	upf1	100	98.093	Oryzias_melastigma
ENSKMAG00000004962	upf1	100	92.685	ENSOGAG00000012866	UPF1	100	92.774	Otolemur_garnettii
ENSKMAG00000004962	upf1	96	90.901	ENSOARG00000010739	UPF1	100	90.901	Ovis_aries
ENSKMAG00000004962	upf1	95	93.922	ENSPPAG00000043884	UPF1	96	93.922	Pan_paniscus
ENSKMAG00000004962	upf1	100	91.608	ENSPPRG00000023470	UPF1	100	91.696	Panthera_pardus
ENSKMAG00000004962	upf1	95	92.625	ENSPTIG00000010159	UPF1	99	92.625	Panthera_tigris_altaica
ENSKMAG00000004962	upf1	100	92.349	ENSPTRG00000010721	UPF1	100	92.438	Pan_troglodytes
ENSKMAG00000004962	upf1	100	92.349	ENSPANG00000008847	UPF1	100	92.438	Papio_anubis
ENSKMAG00000004962	upf1	91	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSKMAG00000004962	upf1	70	93.481	ENSPSIG00000009491	UPF1	100	93.481	Pelodiscus_sinensis
ENSKMAG00000004962	upf1	100	91.131	ENSPMGG00000017327	upf1	100	91.312	Periophthalmus_magnuspinnatus
ENSKMAG00000004962	upf1	100	91.482	ENSPEMG00000001085	Upf1	100	91.571	Peromyscus_maniculatus_bairdii
ENSKMAG00000004962	upf1	100	87.477	ENSPMAG00000001206	upf1	100	87.477	Petromyzon_marinus
ENSKMAG00000004962	upf1	100	92.679	ENSPCIG00000006156	UPF1	100	92.768	Phascolarctos_cinereus
ENSKMAG00000004962	upf1	100	90.999	ENSPLAG00000018155	-	100	90.314	Poecilia_latipinna
ENSKMAG00000004962	upf1	100	98.819	ENSPLAG00000016232	-	100	98.819	Poecilia_latipinna
ENSKMAG00000004962	upf1	100	91.568	ENSPMEG00000011443	-	100	91.190	Poecilia_mexicana
ENSKMAG00000004962	upf1	100	98.730	ENSPMEG00000016319	-	100	98.730	Poecilia_mexicana
ENSKMAG00000004962	upf1	100	98.547	ENSPREG00000011247	-	100	98.547	Poecilia_reticulata
ENSKMAG00000004962	upf1	100	91.375	ENSPREG00000009940	upf1	100	90.787	Poecilia_reticulata
ENSKMAG00000004962	upf1	100	87.779	ENSPPYG00000009752	UPF1	100	87.422	Pongo_abelii
ENSKMAG00000004962	upf1	70	98.653	ENSPCAG00000012962	UPF1	68	98.653	Procavia_capensis
ENSKMAG00000004962	upf1	100	92.096	ENSPCOG00000023813	UPF1	100	92.185	Propithecus_coquereli
ENSKMAG00000004962	upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSKMAG00000004962	upf1	100	91.914	ENSPNYG00000003694	upf1	100	92.183	Pundamilia_nyererei
ENSKMAG00000004962	upf1	100	98.367	ENSPNYG00000016731	-	100	98.367	Pundamilia_nyererei
ENSKMAG00000004962	upf1	100	94.107	ENSPNAG00000025614	upf1	100	93.654	Pygocentrus_nattereri
ENSKMAG00000004962	upf1	100	92.294	ENSRNOG00000020134	Upf1	100	92.384	Rattus_norvegicus
ENSKMAG00000004962	upf1	95	91.548	ENSRBIG00000013894	UPF1	98	94.754	Rhinopithecus_bieti
ENSKMAG00000004962	upf1	95	93.922	ENSRROG00000040935	UPF1	98	94.754	Rhinopithecus_roxellana
ENSKMAG00000004962	upf1	72	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSKMAG00000004962	upf1	94	94.179	ENSSBOG00000023632	UPF1	96	94.179	Saimiri_boliviensis_boliviensis
ENSKMAG00000004962	upf1	95	93.649	ENSSHAG00000010499	UPF1	100	93.649	Sarcophilus_harrisii
ENSKMAG00000004962	upf1	100	95.372	ENSSFOG00015021095	upf1	100	95.372	Scleropages_formosus
ENSKMAG00000004962	upf1	100	98.367	ENSSMAG00000021018	-	100	98.367	Scophthalmus_maximus
ENSKMAG00000004962	upf1	100	90.950	ENSSMAG00000005055	upf1	100	91.756	Scophthalmus_maximus
ENSKMAG00000004962	upf1	100	91.592	ENSSDUG00000013320	upf1	100	92.308	Seriola_dumerili
ENSKMAG00000004962	upf1	100	98.820	ENSSDUG00000009629	-	100	98.820	Seriola_dumerili
ENSKMAG00000004962	upf1	100	98.820	ENSSLDG00000006878	-	100	98.820	Seriola_lalandi_dorsalis
ENSKMAG00000004962	upf1	100	92.419	ENSSLDG00000020868	upf1	100	92.780	Seriola_lalandi_dorsalis
ENSKMAG00000004962	upf1	100	92.986	ENSSPUG00000010538	UPF1	100	93.076	Sphenodon_punctatus
ENSKMAG00000004962	upf1	100	98.456	ENSSPAG00000011521	-	100	98.456	Stegastes_partitus
ENSKMAG00000004962	upf1	100	90.580	ENSSPAG00000000003	upf1	100	90.645	Stegastes_partitus
ENSKMAG00000004962	upf1	100	92.755	ENSSSCG00000039301	UPF1	99	94.732	Sus_scrofa
ENSKMAG00000004962	upf1	82	86.702	ENSTGUG00000001057	UPF1	100	90.828	Taeniopygia_guttata
ENSKMAG00000004962	upf1	100	92.015	ENSTRUG00000000150	upf1	100	92.196	Takifugu_rubripes
ENSKMAG00000004962	upf1	100	96.730	ENSTRUG00000005131	-	100	96.730	Takifugu_rubripes
ENSKMAG00000004962	upf1	100	89.267	ENSTTRG00000011544	UPF1	100	89.267	Tursiops_truncatus
ENSKMAG00000004962	upf1	100	92.507	ENSUAMG00000007093	UPF1	100	92.596	Ursus_americanus
ENSKMAG00000004962	upf1	95	94.732	ENSUMAG00000006652	UPF1	99	95.238	Ursus_maritimus
ENSKMAG00000004962	upf1	100	92.596	ENSVVUG00000007797	UPF1	100	92.685	Vulpes_vulpes
ENSKMAG00000004962	upf1	100	79.912	ENSXETG00000013602	upf1	100	79.912	Xenopus_tropicalis
ENSKMAG00000004962	upf1	94	98.740	ENSXCOG00000005764	-	100	98.740	Xiphophorus_couchianus
ENSKMAG00000004962	upf1	97	91.165	ENSXCOG00000015275	-	96	91.165	Xiphophorus_couchianus
ENSKMAG00000004962	upf1	100	98.548	ENSXMAG00000002540	-	100	98.548	Xiphophorus_maculatus
ENSKMAG00000004962	upf1	100	91.371	ENSXMAG00000001703	-	100	91.371	Xiphophorus_maculatus