EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000005073 (Gene tree)
Gene ID: 108234286
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 2443 bases
Position: chrLWHD01000026.1:638287-640729
Accession: 108234286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000006700	LSM	PF01423.22	1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000006808	-	1309	XM_017413344	ENSKMAP00000006700	144 (aa)	XP_017268833	UPI0007F93988

Gene Model

Click here to download ENSKMAG00000005073's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000005073	lsm4	72	33.010	ENSKMAG00000012493	snrpd3l	56	34.722
ENSKMAG00000005073	lsm4	68	33.333	ENSKMAG00000014909	si:ch73-14h10.2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005073	lsm4	61	97.727	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSKMAG00000005073	lsm4	100	90.728	ENSAPOG00000005643	lsm4	100	87.417	Acanthochromis_polyacanthus
ENSKMAG00000005073	lsm4	60	97.701	ENSAMEG00000011162	LSM4	58	97.647	Ailuropoda_melanoleuca
ENSKMAG00000005073	lsm4	100	92.568	ENSAOCG00000006414	lsm4	100	89.865	Amphiprion_ocellaris
ENSKMAG00000005073	lsm4	100	91.946	ENSAPEG00000006238	lsm4	100	88.591	Amphiprion_percula
ENSKMAG00000005073	lsm4	100	88.816	ENSATEG00000016559	lsm4	100	87.500	Anabas_testudineus
ENSKMAG00000005073	lsm4	61	97.727	ENSANAG00000034659	LSM4	62	97.674	Aotus_nancymaae
ENSKMAG00000005073	lsm4	100	91.837	ENSACLG00000022738	lsm4	100	89.116	Astatotilapia_calliptera
ENSKMAG00000005073	lsm4	100	88.966	ENSAMXG00000016932	lsm4	100	87.586	Astyanax_mexicanus
ENSKMAG00000005073	lsm4	61	97.727	ENSBTAG00000008578	LSM4	62	97.674	Bos_taurus
ENSKMAG00000005073	lsm4	58	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSKMAG00000005073	lsm4	61	97.727	ENSCJAG00000014171	LSM4	62	97.674	Callithrix_jacchus
ENSKMAG00000005073	lsm4	61	97.727	ENSCAFG00000014900	LSM4	56	97.674	Canis_familiaris
ENSKMAG00000005073	lsm4	61	97.727	ENSCAFG00020012137	LSM4	62	97.674	Canis_lupus_dingo
ENSKMAG00000005073	lsm4	60	97.701	ENSCHIG00000010928	LSM4	56	97.647	Capra_hircus
ENSKMAG00000005073	lsm4	61	96.591	ENSTSYG00000030906	LSM4	62	96.512	Carlito_syrichta
ENSKMAG00000005073	lsm4	61	96.591	ENSCAPG00000014140	LSM4	62	96.512	Cavia_aperea
ENSKMAG00000005073	lsm4	61	96.591	ENSCPOG00000024117	LSM4	62	96.512	Cavia_porcellus
ENSKMAG00000005073	lsm4	61	97.727	ENSCCAG00000036308	LSM4	62	97.674	Cebus_capucinus
ENSKMAG00000005073	lsm4	61	97.727	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSKMAG00000005073	lsm4	61	97.727	ENSCLAG00000010828	LSM4	62	97.674	Chinchilla_lanigera
ENSKMAG00000005073	lsm4	61	97.727	ENSCSAG00000005370	LSM4	62	97.674	Chlorocebus_sabaeus
ENSKMAG00000005073	lsm4	61	98.864	ENSCPBG00000012925	LSM4	62	98.837	Chrysemys_picta_bellii
ENSKMAG00000005073	lsm4	60	91.860	ENSCING00000007519	-	68	91.860	Ciona_intestinalis
ENSKMAG00000005073	lsm4	60	91.860	ENSCSAVG00000008596	-	69	91.860	Ciona_savignyi
ENSKMAG00000005073	lsm4	61	97.727	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSKMAG00000005073	lsm4	61	94.318	ENSCGRG00001014436	Lsm4	61	95.238	Cricetulus_griseus_chok1gshd
ENSKMAG00000005073	lsm4	60	94.253	ENSCGRG00000009398	Lsm4	61	95.181	Cricetulus_griseus_crigri
ENSKMAG00000005073	lsm4	100	86.111	ENSCSEG00000016127	lsm4	100	93.056	Cynoglossus_semilaevis
ENSKMAG00000005073	lsm4	90	94.574	ENSCVAG00000021828	lsm4	98	94.574	Cyprinodon_variegatus
ENSKMAG00000005073	lsm4	100	95.139	ENSCVAG00000010601	lsm4	100	95.139	Cyprinodon_variegatus
ENSKMAG00000005073	lsm4	96	85.517	ENSDARG00000023852	lsm4	60	98.837	Danio_rerio
ENSKMAG00000005073	lsm4	61	96.591	ENSDORG00000024225	Lsm4	62	96.512	Dipodomys_ordii
ENSKMAG00000005073	lsm4	73	77.143	FBgn0032240	CG17768	56	87.209	Drosophila_melanogaster
ENSKMAG00000005073	lsm4	51	98.630	ENSETEG00000007762	-	57	98.592	Echinops_telfairi
ENSKMAG00000005073	lsm4	52	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSKMAG00000005073	lsm4	93	91.045	ENSELUG00000012821	lsm4	64	98.824	Esox_lucius
ENSKMAG00000005073	lsm4	61	97.727	ENSFCAG00000040580	LSM4	62	97.674	Felis_catus
ENSKMAG00000005073	lsm4	60	98.851	ENSFALG00000009478	LSM4	62	98.824	Ficedula_albicollis
ENSKMAG00000005073	lsm4	60	97.701	ENSFDAG00000010124	LSM4	62	97.647	Fukomys_damarensis
ENSKMAG00000005073	lsm4	99	78.231	ENSGMOG00000007729	lsm4	58	98.824	Gadus_morhua
ENSKMAG00000005073	lsm4	61	98.864	ENSGALG00000003385	LSM4	62	98.837	Gallus_gallus
ENSKMAG00000005073	lsm4	100	93.056	ENSGAFG00000004903	lsm4	97	90.698	Gambusia_affinis
ENSKMAG00000005073	lsm4	100	83.333	ENSGACG00000008140	lsm4	100	80.667	Gasterosteus_aculeatus
ENSKMAG00000005073	lsm4	61	98.864	ENSGAGG00000017812	LSM4	62	98.837	Gopherus_agassizii
ENSKMAG00000005073	lsm4	61	97.727	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSKMAG00000005073	lsm4	100	92.466	ENSHBUG00000008858	lsm4	80	89.726	Haplochromis_burtoni
ENSKMAG00000005073	lsm4	97	75.887	ENSHGLG00000006568	LSM4	62	97.674	Heterocephalus_glaber_female
ENSKMAG00000005073	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSKMAG00000005073	lsm4	100	93.750	ENSHCOG00000008819	lsm4	100	93.750	Hippocampus_comes
ENSKMAG00000005073	lsm4	100	88.966	ENSIPUG00000005368	Lsm4	100	87.586	Ictalurus_punctatus
ENSKMAG00000005073	lsm4	61	97.727	ENSSTOG00000016494	LSM4	62	97.674	Ictidomys_tridecemlineatus
ENSKMAG00000005073	lsm4	61	95.455	ENSJJAG00000017420	Lsm4	62	95.349	Jaculus_jaculus
ENSKMAG00000005073	lsm4	100	91.275	ENSLBEG00000027930	lsm4	100	91.275	Labrus_bergylta
ENSKMAG00000005073	lsm4	61	98.864	ENSLACG00000015861	LSM4	61	98.837	Latimeria_chalumnae
ENSKMAG00000005073	lsm4	70	96.040	ENSLOCG00000002025	lsm4	61	97.674	Lepisosteus_oculatus
ENSKMAG00000005073	lsm4	60	98.851	ENSLAFG00000017459	LSM4	61	98.824	Loxodonta_africana
ENSKMAG00000005073	lsm4	61	97.727	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSKMAG00000005073	lsm4	61	97.727	ENSMMUG00000004405	LSM4	62	97.674	Macaca_mulatta
ENSKMAG00000005073	lsm4	61	97.727	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSKMAG00000005073	lsm4	61	97.727	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSKMAG00000005073	lsm4	100	93.056	ENSMAMG00000006190	lsm4	100	92.361	Mastacembelus_armatus
ENSKMAG00000005073	lsm4	100	92.466	ENSMZEG00005016420	lsm4	100	89.726	Maylandia_zebra
ENSKMAG00000005073	lsm4	94	75.912	ENSMGAG00000004976	LSM4	61	98.824	Meleagris_gallopavo
ENSKMAG00000005073	lsm4	69	94.949	ENSMICG00000000222	LSM4	62	97.674	Microcebus_murinus
ENSKMAG00000005073	lsm4	61	94.318	ENSMOCG00000020861	Lsm4	61	95.238	Microtus_ochrogaster
ENSKMAG00000005073	lsm4	51	98.630	ENSMODG00000015044	-	57	98.592	Monodelphis_domestica
ENSKMAG00000005073	lsm4	100	95.139	ENSMALG00000018159	lsm4	100	94.444	Monopterus_albus
ENSKMAG00000005073	lsm4	61	94.318	MGP_CAROLIEiJ_G0031158	Lsm4	61	95.238	Mus_caroli
ENSKMAG00000005073	lsm4	61	94.318	ENSMUSG00000031848	Lsm4	81	88.095	Mus_musculus
ENSKMAG00000005073	lsm4	61	94.318	MGP_PahariEiJ_G0021623	Lsm4	61	95.238	Mus_pahari
ENSKMAG00000005073	lsm4	61	94.318	MGP_SPRETEiJ_G0032276	Lsm4	61	95.238	Mus_spretus
ENSKMAG00000005073	lsm4	61	97.727	ENSMPUG00000015589	LSM4	62	97.674	Mustela_putorius_furo
ENSKMAG00000005073	lsm4	60	97.701	ENSMLUG00000004010	LSM4	61	97.647	Myotis_lucifugus
ENSKMAG00000005073	lsm4	61	94.318	ENSNGAG00000008644	Lsm4	62	94.186	Nannospalax_galili
ENSKMAG00000005073	lsm4	75	96.296	ENSNBRG00000022150	lsm4	67	96.296	Neolamprologus_brichardi
ENSKMAG00000005073	lsm4	51	94.521	ENSMEUG00000013229	LSM4	57	94.366	Notamacropus_eugenii
ENSKMAG00000005073	lsm4	86	76.613	ENSOPRG00000005575	LSM4	60	95.775	Ochotona_princeps
ENSKMAG00000005073	lsm4	97	61.702	ENSODEG00000011712	-	98	61.702	Octodon_degus
ENSKMAG00000005073	lsm4	61	97.727	ENSODEG00000020549	-	62	97.674	Octodon_degus
ENSKMAG00000005073	lsm4	61	88.636	ENSODEG00000004519	-	62	88.372	Octodon_degus
ENSKMAG00000005073	lsm4	100	91.837	ENSONIG00000012724	lsm4	100	89.116	Oreochromis_niloticus
ENSKMAG00000005073	lsm4	60	93.407	ENSOANG00000007434	LSM4	77	93.258	Ornithorhynchus_anatinus
ENSKMAG00000005073	lsm4	100	95.139	ENSORLG00000008391	lsm4	100	95.139	Oryzias_latipes
ENSKMAG00000005073	lsm4	100	95.833	ENSORLG00020014829	lsm4	100	95.833	Oryzias_latipes_hni
ENSKMAG00000005073	lsm4	100	95.139	ENSORLG00015010205	lsm4	100	95.139	Oryzias_latipes_hsok
ENSKMAG00000005073	lsm4	100	93.750	ENSOMEG00000003606	lsm4	100	93.750	Oryzias_melastigma
ENSKMAG00000005073	lsm4	68	94.898	ENSOGAG00000027992	LSM4	58	97.647	Otolemur_garnettii
ENSKMAG00000005073	lsm4	60	97.701	ENSOARG00000012553	LSM4	59	97.647	Ovis_aries
ENSKMAG00000005073	lsm4	61	97.727	ENSPPAG00000044045	-	62	97.674	Pan_paniscus
ENSKMAG00000005073	lsm4	61	97.727	ENSPPRG00000018264	LSM4	62	97.674	Panthera_pardus
ENSKMAG00000005073	lsm4	60	97.701	ENSPTIG00000006306	LSM4	62	97.647	Panthera_tigris_altaica
ENSKMAG00000005073	lsm4	61	97.727	ENSPTRG00000031470	LSM4	62	97.674	Pan_troglodytes
ENSKMAG00000005073	lsm4	61	97.727	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSKMAG00000005073	lsm4	100	88.276	ENSPKIG00000006154	lsm4	100	85.517	Paramormyrops_kingsleyae
ENSKMAG00000005073	lsm4	60	98.851	ENSPSIG00000012358	LSM4	62	98.824	Pelodiscus_sinensis
ENSKMAG00000005073	lsm4	96	69.565	ENSPEMG00000001358	Lsm4	61	95.238	Peromyscus_maniculatus_bairdii
ENSKMAG00000005073	lsm4	100	93.056	ENSPFOG00000000570	lsm4	76	93.056	Poecilia_formosa
ENSKMAG00000005073	lsm4	100	93.056	ENSPLAG00000016267	lsm4	100	93.056	Poecilia_latipinna
ENSKMAG00000005073	lsm4	100	93.056	ENSPMEG00000016378	lsm4	100	93.056	Poecilia_mexicana
ENSKMAG00000005073	lsm4	100	93.750	ENSPREG00000011290	lsm4	76	93.750	Poecilia_reticulata
ENSKMAG00000005073	lsm4	61	97.727	ENSPPYG00000009736	LSM4	62	97.674	Pongo_abelii
ENSKMAG00000005073	lsm4	51	98.630	ENSPCAG00000008513	LSM4	57	98.592	Procavia_capensis
ENSKMAG00000005073	lsm4	69	94.949	ENSPCOG00000019837	LSM4	62	97.674	Propithecus_coquereli
ENSKMAG00000005073	lsm4	61	97.727	ENSPVAG00000015383	LSM4	62	97.674	Pteropus_vampyrus
ENSKMAG00000005073	lsm4	100	92.466	ENSPNYG00000016794	lsm4	100	89.726	Pundamilia_nyererei
ENSKMAG00000005073	lsm4	95	91.241	ENSPNAG00000016598	lsm4	63	98.824	Pygocentrus_nattereri
ENSKMAG00000005073	lsm4	61	94.318	ENSRNOG00000019572	Lsm4	61	95.238	Rattus_norvegicus
ENSKMAG00000005073	lsm4	61	97.727	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSKMAG00000005073	lsm4	61	97.727	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSKMAG00000005073	lsm4	58	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSKMAG00000005073	lsm4	51	97.297	ENSSBOG00000022455	LSM4	58	97.222	Saimiri_boliviensis_boliviensis
ENSKMAG00000005073	lsm4	61	98.864	ENSSHAG00000011559	LSM4	62	98.837	Sarcophilus_harrisii
ENSKMAG00000005073	lsm4	100	89.655	ENSSFOG00015021067	lsm4	100	86.897	Scleropages_formosus
ENSKMAG00000005073	lsm4	100	79.333	ENSSMAG00000021020	lsm4	100	84.667	Scophthalmus_maximus
ENSKMAG00000005073	lsm4	100	82.036	ENSSDUG00000009588	lsm4	100	79.641	Seriola_dumerili
ENSKMAG00000005073	lsm4	100	81.548	ENSSLDG00000006827	lsm4	100	79.167	Seriola_lalandi_dorsalis
ENSKMAG00000005073	lsm4	60	98.851	ENSSPUG00000010166	LSM4	55	98.824	Sphenodon_punctatus
ENSKMAG00000005073	lsm4	100	90.066	ENSSPAG00000011615	lsm4	100	87.417	Stegastes_partitus
ENSKMAG00000005073	lsm4	61	97.727	ENSSSCG00000034314	LSM4	62	97.674	Sus_scrofa
ENSKMAG00000005073	lsm4	100	91.667	ENSTRUG00000021737	lsm4	100	90.972	Takifugu_rubripes
ENSKMAG00000005073	lsm4	100	86.897	ENSTNIG00000010191	lsm4	100	88.966	Tetraodon_nigroviridis
ENSKMAG00000005073	lsm4	61	97.727	ENSUAMG00000000665	LSM4	71	97.674	Ursus_americanus
ENSKMAG00000005073	lsm4	61	97.727	ENSUMAG00000009013	LSM4	62	97.674	Ursus_maritimus
ENSKMAG00000005073	lsm4	68	95.918	ENSXETG00000024933	lsm4	62	97.674	Xenopus_tropicalis
ENSKMAG00000005073	lsm4	100	93.056	ENSXMAG00000026672	lsm4	76	93.056	Xiphophorus_maculatus