EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000005146 (Gene tree)
Gene ID: 108235511
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 10773 bases
Position: chrLWHD01000034.1:304420-315192
Accession: 108235511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000006833	Fox-1_C	PF12414.8	4e-35	1	1
ENSKMAP00000006870	Fox-1_C	PF12414.8	5.6e-15	1	1
ENSKMAP00000006870	RRM_1	PF00076.22	7.3e-18	1	1
ENSKMAP00000006833	RRM_1	PF00076.22	7.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000006944	-	1158	XM_017415566	ENSKMAP00000006833	385 (aa)	XP_017271055	UPI0007F8A0FF
ENSKMAT00000006982	-	1095	-	ENSKMAP00000006870	364 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000005146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000005146	rbfox1l	85	58.359	ENSKMAG00000006726	rbfox3b	59	73.799
ENSKMAG00000005146	rbfox1l	64	60.370	ENSKMAG00000013354	-	85	65.497
ENSKMAG00000005146	rbfox1l	64	65.299	ENSKMAG00000021880	-	56	65.267

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005146	rbfox1l	97	88.472	ENSAPOG00000016304	rbfox1l	98	89.008	Acanthochromis_polyacanthus
ENSKMAG00000005146	rbfox1l	100	83.562	ENSACIG00000006441	rbfox1l	100	81.918	Amphilophus_citrinellus
ENSKMAG00000005146	rbfox1l	83	85.580	ENSAOCG00000020938	rbfox1l	92	85.256	Amphiprion_ocellaris
ENSKMAG00000005146	rbfox1l	100	89.091	ENSAPEG00000008232	rbfox1l	100	89.610	Amphiprion_percula
ENSKMAG00000005146	rbfox1l	100	85.195	ENSATEG00000022649	rbfox1l	100	84.156	Anabas_testudineus
ENSKMAG00000005146	rbfox1l	64	72.441	ENSACAG00000011931	-	89	73.200	Anolis_carolinensis
ENSKMAG00000005146	rbfox1l	100	87.532	ENSACLG00000021394	rbfox1l	100	87.273	Astatotilapia_calliptera
ENSKMAG00000005146	rbfox1l	100	85.530	ENSAMXG00000010470	rbfox1l	100	85.530	Astyanax_mexicanus
ENSKMAG00000005146	rbfox1l	65	70.196	ENSCPBG00000010944	-	100	57.436	Chrysemys_picta_bellii
ENSKMAG00000005146	rbfox1l	100	86.788	ENSCSEG00000018898	rbfox1l	100	87.047	Cynoglossus_semilaevis
ENSKMAG00000005146	rbfox1l	100	89.091	ENSCVAG00000007986	rbfox1l	100	88.052	Cyprinodon_variegatus
ENSKMAG00000005146	rbfox1l	100	82.171	ENSDARG00000021184	rbfox1l	100	82.687	Danio_rerio
ENSKMAG00000005146	rbfox1l	100	82.487	ENSELUG00000015077	rbfox1l	100	82.487	Esox_lucius
ENSKMAG00000005146	rbfox1l	79	95.122	ENSFHEG00000016557	rbfox1l	95	95.122	Fundulus_heteroclitus
ENSKMAG00000005146	rbfox1l	100	81.299	ENSGMOG00000005040	rbfox1l	100	81.299	Gadus_morhua
ENSKMAG00000005146	rbfox1l	92	88.764	ENSGAFG00000013211	rbfox1l	97	87.921	Gambusia_affinis
ENSKMAG00000005146	rbfox1l	100	86.753	ENSGACG00000010757	rbfox1l	100	86.494	Gasterosteus_aculeatus
ENSKMAG00000005146	rbfox1l	64	70.400	ENSGAGG00000012440	-	84	73.171	Gopherus_agassizii
ENSKMAG00000005146	rbfox1l	100	87.532	ENSHBUG00000013406	rbfox1l	100	87.273	Haplochromis_burtoni
ENSKMAG00000005146	rbfox1l	100	84.456	ENSHCOG00000020771	rbfox1l	100	83.679	Hippocampus_comes
ENSKMAG00000005146	rbfox1l	99	78.068	ENSIPUG00000000065	rbfox1l	99	79.109	Ictalurus_punctatus
ENSKMAG00000005146	rbfox1l	100	88.571	ENSLBEG00000017089	rbfox1l	100	89.091	Labrus_bergylta
ENSKMAG00000005146	rbfox1l	100	88.831	ENSMAMG00000019480	rbfox1l	100	89.610	Mastacembelus_armatus
ENSKMAG00000005146	rbfox1l	100	87.532	ENSMZEG00005016374	rbfox1l	100	87.273	Maylandia_zebra
ENSKMAG00000005146	rbfox1l	100	87.273	ENSMMOG00000016530	rbfox1l	100	86.234	Mola_mola
ENSKMAG00000005146	rbfox1l	100	85.714	ENSMALG00000009384	rbfox1l	100	85.195	Monopterus_albus
ENSKMAG00000005146	rbfox1l	100	86.753	ENSNBRG00000003346	rbfox1l	100	86.494	Neolamprologus_brichardi
ENSKMAG00000005146	rbfox1l	100	87.532	ENSONIG00000012754	rbfox1l	100	87.273	Oreochromis_niloticus
ENSKMAG00000005146	rbfox1l	100	85.455	ENSORLG00000011269	rbfox1l	100	86.234	Oryzias_latipes
ENSKMAG00000005146	rbfox1l	100	85.974	ENSORLG00020000162	rbfox1l	100	86.753	Oryzias_latipes_hni
ENSKMAG00000005146	rbfox1l	100	85.974	ENSORLG00015013464	rbfox1l	100	86.753	Oryzias_latipes_hsok
ENSKMAG00000005146	rbfox1l	100	87.532	ENSOMEG00000010584	rbfox1l	100	88.312	Oryzias_melastigma
ENSKMAG00000005146	rbfox1l	100	85.714	ENSPKIG00000012029	rbfox1l	100	85.974	Paramormyrops_kingsleyae
ENSKMAG00000005146	rbfox1l	100	80.829	ENSPMGG00000012082	rbfox1l	100	78.756	Periophthalmus_magnuspinnatus
ENSKMAG00000005146	rbfox1l	100	90.390	ENSPFOG00000009338	rbfox1l	100	89.610	Poecilia_formosa
ENSKMAG00000005146	rbfox1l	85	81.155	ENSPLAG00000012816	rbfox1l	90	81.000	Poecilia_latipinna
ENSKMAG00000005146	rbfox1l	100	85.714	ENSPMEG00000017597	rbfox1l	100	85.195	Poecilia_mexicana
ENSKMAG00000005146	rbfox1l	100	85.974	ENSPREG00000007940	rbfox1l	100	85.455	Poecilia_reticulata
ENSKMAG00000005146	rbfox1l	100	87.792	ENSPNYG00000002098	rbfox1l	100	87.532	Pundamilia_nyererei
ENSKMAG00000005146	rbfox1l	100	84.536	ENSPNAG00000001620	rbfox1l	100	82.990	Pygocentrus_nattereri
ENSKMAG00000005146	rbfox1l	100	82.124	ENSSFOG00015000675	rbfox1l	100	82.383	Scleropages_formosus
ENSKMAG00000005146	rbfox1l	100	86.753	ENSSMAG00000013090	rbfox1l	100	86.234	Scophthalmus_maximus
ENSKMAG00000005146	rbfox1l	100	84.103	ENSSDUG00000008705	rbfox1l	100	84.655	Seriola_dumerili
ENSKMAG00000005146	rbfox1l	100	84.143	ENSSLDG00000022256	rbfox1l	100	85.128	Seriola_lalandi_dorsalis
ENSKMAG00000005146	rbfox1l	100	88.831	ENSSPAG00000016620	rbfox1l	100	89.351	Stegastes_partitus
ENSKMAG00000005146	rbfox1l	96	82.796	ENSTRUG00000015905	rbfox1l	100	83.333	Takifugu_rubripes
ENSKMAG00000005146	rbfox1l	64	81.413	ENSTNIG00000008088	rbfox1l	97	83.270	Tetraodon_nigroviridis
ENSKMAG00000005146	rbfox1l	100	88.831	ENSXMAG00000023471	rbfox1l	100	89.610	Xiphophorus_maculatus