EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

Orthologs

Description

Ensembl ID: ENSKMAG00000005390 (Gene tree)
Gene ID: 108234878
Gene Symbol: ppargc1a
Alias: PGC1|gb:dq017637|ppargc1al
Full Name: PPARG coactivator 1 alpha
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 47795 bases
Position: chrLWHD01000030.1:1720426-1768220
Accession: 108234878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007223	RRM_1	PF00076.22	4.8e-07	1	1
ENSKMAP00000007230	RRM_1	PF00076.22	6e-07	1	1
ENSKMAP00000007182	RRM_1	PF00076.22	6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000007340	-	2316	-	ENSKMAP00000007223	771 (aa)	-	-
ENSKMAT00000007298	-	6748	XM_017414478	ENSKMAP00000007182	940 (aa)	XP_017269967	UPI0007F908A1
ENSKMAT00000007347	-	6319	XM_017414479	ENSKMAP00000007230	938 (aa)	XP_017269968	-

Gene Model

Click here to download ENSKMAG00000005390's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr04371	Apelin signaling pathway	KEGG
kmr04910	Insulin signaling pathway	KEGG
kmr04920	Adipocytokine signaling pathway	KEGG

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005390	ppargc1a	91	81.098	ENSG00000109819	PPARGC1A	96	68.601	Homo_sapiens
ENSKMAG00000005390	ppargc1a	93	95.935	ENSAPOG00000018632	ppargc1a	99	95.510	Acanthochromis_polyacanthus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSAMEG00000010421	PPARGC1A	89	81.250	Ailuropoda_melanoleuca
ENSKMAG00000005390	ppargc1a	100	76.238	ENSACIG00000009732	ppargc1a	100	76.733	Amphilophus_citrinellus
ENSKMAG00000005390	ppargc1a	93	95.935	ENSAOCG00000006754	ppargc1a	99	95.510	Amphiprion_ocellaris
ENSKMAG00000005390	ppargc1a	100	80.073	ENSAPEG00000022574	ppargc1a	99	95.510	Amphiprion_percula
ENSKMAG00000005390	ppargc1a	100	81.468	ENSATEG00000016702	ppargc1a	100	81.242	Anabas_testudineus
ENSKMAG00000005390	ppargc1a	100	53.864	ENSACAG00000000741	PPARGC1A	51	79.545	Anolis_carolinensis
ENSKMAG00000005390	ppargc1a	100	48.491	ENSANAG00000035930	PPARGC1A	72	77.041	Aotus_nancymaae
ENSKMAG00000005390	ppargc1a	92	94.805	ENSACLG00000001002	ppargc1a	100	82.097	Astatotilapia_calliptera
ENSKMAG00000005390	ppargc1a	93	96.053	ENSAMXG00000002461	ppargc1a	99	96.053	Astyanax_mexicanus
ENSKMAG00000005390	ppargc1a	91	80.000	ENSBTAG00000017024	PPARGC1A	89	80.682	Bos_taurus
ENSKMAG00000005390	ppargc1a	100	54.048	ENSCJAG00000013024	PPARGC1A	71	81.250	Callithrix_jacchus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSCAFG00000016519	PPARGC1A	71	81.250	Canis_familiaris
ENSKMAG00000005390	ppargc1a	89	81.098	ENSCAFG00020027242	PPARGC1A	70	81.250	Canis_lupus_dingo
ENSKMAG00000005390	ppargc1a	91	80.606	ENSCHIG00000015991	PPARGC1A	89	81.250	Capra_hircus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSTSYG00000010439	PPARGC1A	88	76.531	Carlito_syrichta
ENSKMAG00000005390	ppargc1a	89	80.488	ENSCPOG00000001518	PPARGC1A	71	80.682	Cavia_porcellus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSCCAG00000024681	PPARGC1A	68	81.437	Cebus_capucinus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSCATG00000032575	PPARGC1A	69	80.625	Cercocebus_atys
ENSKMAG00000005390	ppargc1a	91	79.878	ENSCLAG00000002058	PPARGC1A	100	51.249	Chinchilla_lanigera
ENSKMAG00000005390	ppargc1a	91	81.098	ENSCSAG00000016575	PPARGC1A	72	76.531	Chlorocebus_sabaeus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSCANG00000033426	PPARGC1A	71	81.250	Colobus_angolensis_palliatus
ENSKMAG00000005390	ppargc1a	91	78.659	ENSCGRG00001015534	Ppargc1a	90	74.490	Cricetulus_griseus_chok1gshd
ENSKMAG00000005390	ppargc1a	91	78.659	ENSCGRG00000000200	Ppargc1a	90	74.490	Cricetulus_griseus_crigri
ENSKMAG00000005390	ppargc1a	97	92.857	ENSCSEG00000006884	ppargc1a	87	94.309	Cynoglossus_semilaevis
ENSKMAG00000005390	ppargc1a	100	73.613	ENSCVAG00000016547	ppargc1a	100	73.508	Cyprinodon_variegatus
ENSKMAG00000005390	ppargc1a	77	84.127	ENSDARG00000067829	ppargc1a	71	84.127	Danio_rerio
ENSKMAG00000005390	ppargc1a	100	55.189	ENSDNOG00000041106	PPARGC1A	89	81.714	Dasypus_novemcinctus
ENSKMAG00000005390	ppargc1a	90	79.268	ENSDORG00000016276	Ppargc1a	70	75.000	Dipodomys_ordii
ENSKMAG00000005390	ppargc1a	91	81.098	ENSEASG00005007984	PPARGC1A	71	81.250	Equus_asinus_asinus
ENSKMAG00000005390	ppargc1a	90	81.098	ENSECAG00000009164	PPARGC1A	68	81.250	Equus_caballus
ENSKMAG00000005390	ppargc1a	98	54.765	ENSEEUG00000009219	PPARGC1A	89	79.545	Erinaceus_europaeus
ENSKMAG00000005390	ppargc1a	92	90.789	ENSELUG00000017027	ppargc1a	91	71.469	Esox_lucius
ENSKMAG00000005390	ppargc1a	100	55.148	ENSFCAG00000000043	PPARGC1A	71	80.682	Felis_catus
ENSKMAG00000005390	ppargc1a	91	78.659	ENSFDAG00000005659	PPARGC1A	74	74.490	Fukomys_damarensis
ENSKMAG00000005390	ppargc1a	95	95.614	ENSFHEG00000021990	ppargc1a	100	82.323	Fundulus_heteroclitus
ENSKMAG00000005390	ppargc1a	91	81.818	ENSGALG00000042851	PPARGC1A	89	81.818	Gallus_gallus
ENSKMAG00000005390	ppargc1a	95	94.737	ENSGAFG00000015514	ppargc1a	99	93.061	Gambusia_affinis
ENSKMAG00000005390	ppargc1a	99	53.571	ENSGAGG00000007043	PPARGC1A	89	80.682	Gopherus_agassizii
ENSKMAG00000005390	ppargc1a	91	81.098	ENSGGOG00000009810	PPARGC1A	69	80.625	Gorilla_gorilla
ENSKMAG00000005390	ppargc1a	95	93.277	ENSHBUG00000005269	ppargc1a	99	95.082	Haplochromis_burtoni
ENSKMAG00000005390	ppargc1a	90	78.659	ENSHGLG00000007022	PPARGC1A	72	74.490	Heterocephalus_glaber_female
ENSKMAG00000005390	ppargc1a	91	78.659	ENSHGLG00100000133	PPARGC1A	72	74.490	Heterocephalus_glaber_male
ENSKMAG00000005390	ppargc1a	94	93.860	ENSHCOG00000014886	ppargc1a	100	73.130	Hippocampus_comes
ENSKMAG00000005390	ppargc1a	91	79.878	ENSSTOG00000012522	PPARGC1A	72	75.510	Ictidomys_tridecemlineatus
ENSKMAG00000005390	ppargc1a	92	95.851	ENSLBEG00000019562	ppargc1a	99	95.102	Labrus_bergylta
ENSKMAG00000005390	ppargc1a	91	80.000	ENSLACG00000014054	PPARGC1A	87	80.513	Latimeria_chalumnae
ENSKMAG00000005390	ppargc1a	64	44.361	ENSLOCG00000012195	ppargc1b	57	44.361	Lepisosteus_oculatus
ENSKMAG00000005390	ppargc1a	71	57.271	ENSLOCG00000012350	ppargc1a	67	56.287	Lepisosteus_oculatus
ENSKMAG00000005390	ppargc1a	100	52.331	ENSLAFG00000012981	PPARGC1A	52	73.973	Loxodonta_africana
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMFAG00000000534	PPARGC1A	69	80.625	Macaca_fascicularis
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMMUG00000001844	PPARGC1A	100	53.724	Macaca_mulatta
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMNEG00000028682	PPARGC1A	69	80.625	Macaca_nemestrina
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMLEG00000034233	PPARGC1A	69	80.625	Mandrillus_leucophaeus
ENSKMAG00000005390	ppargc1a	100	80.000	ENSMAMG00000005531	ppargc1a	100	79.854	Mastacembelus_armatus
ENSKMAG00000005390	ppargc1a	95	92.857	ENSMZEG00005001739	ppargc1a	69	94.715	Maylandia_zebra
ENSKMAG00000005390	ppargc1a	91	82.424	ENSMGAG00000012485	PPARGC1A	89	82.386	Meleagris_gallopavo
ENSKMAG00000005390	ppargc1a	91	79.268	ENSMAUG00000011811	Ppargc1a	90	75.000	Mesocricetus_auratus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMICG00000015390	PPARGC1A	90	76.531	Microcebus_murinus
ENSKMAG00000005390	ppargc1a	91	79.268	ENSMOCG00000008765	Ppargc1a	90	75.000	Microtus_ochrogaster
ENSKMAG00000005390	ppargc1a	96	92.562	ENSMMOG00000011847	ppargc1a	99	95.152	Mola_mola
ENSKMAG00000005390	ppargc1a	91	81.707	ENSMODG00000000549	PPARGC1A	53	77.949	Monodelphis_domestica
ENSKMAG00000005390	ppargc1a	99	92.017	ENSMALG00000004625	ppargc1a	88	95.122	Monopterus_albus
ENSKMAG00000005390	ppargc1a	91	77.439	MGP_CAROLIEiJ_G0027213	Ppargc1a	90	73.469	Mus_caroli
ENSKMAG00000005390	ppargc1a	91	77.439	ENSMUSG00000029167	Ppargc1a	90	73.469	Mus_musculus
ENSKMAG00000005390	ppargc1a	56	38.725	MGP_PahariEiJ_G0019053	Ppargc1b	62	40.385	Mus_pahari
ENSKMAG00000005390	ppargc1a	91	77.439	MGP_PahariEiJ_G0016995	Ppargc1a	90	73.469	Mus_pahari
ENSKMAG00000005390	ppargc1a	91	76.829	MGP_SPRETEiJ_G0028208	Ppargc1a	90	72.959	Mus_spretus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSMPUG00000016736	PPARGC1A	71	81.250	Mustela_putorius_furo
ENSKMAG00000005390	ppargc1a	100	55.095	ENSMLUG00000016307	PPARGC1A	89	80.682	Myotis_lucifugus
ENSKMAG00000005390	ppargc1a	91	79.268	ENSNGAG00000015090	Ppargc1a	71	79.545	Nannospalax_galili
ENSKMAG00000005390	ppargc1a	100	82.097	ENSNBRG00000023403	ppargc1a	100	81.969	Neolamprologus_brichardi
ENSKMAG00000005390	ppargc1a	78	81.098	ENSNLEG00000016760	PPARGC1A	67	76.531	Nomascus_leucogenys
ENSKMAG00000005390	ppargc1a	91	79.878	ENSOPRG00000012899	PPARGC1A	90	75.510	Ochotona_princeps
ENSKMAG00000005390	ppargc1a	100	73.357	ENSONIG00000007635	ppargc1a	100	74.413	Oreochromis_niloticus
ENSKMAG00000005390	ppargc1a	91	82.424	ENSOANG00000006680	PPARGC1A	51	82.386	Ornithorhynchus_anatinus
ENSKMAG00000005390	ppargc1a	91	80.488	ENSOCUG00000014668	PPARGC1A	54	76.020	Oryctolagus_cuniculus
ENSKMAG00000005390	ppargc1a	97	92.857	ENSORLG00000004788	ppargc1a	98	93.878	Oryzias_latipes
ENSKMAG00000005390	ppargc1a	99	85.284	ENSORLG00020014690	ppargc1a	100	82.550	Oryzias_latipes_hni
ENSKMAG00000005390	ppargc1a	99	84.950	ENSORLG00015012206	ppargc1a	99	94.737	Oryzias_latipes_hsok
ENSKMAG00000005390	ppargc1a	100	80.500	ENSOMEG00000000670	ppargc1a	99	82.062	Oryzias_melastigma
ENSKMAG00000005390	ppargc1a	100	54.664	ENSOGAG00000014559	PPARGC1A	90	75.000	Otolemur_garnettii
ENSKMAG00000005390	ppargc1a	91	80.606	ENSOARG00000005581	PPARGC1A	87	81.250	Ovis_aries
ENSKMAG00000005390	ppargc1a	91	81.098	ENSPPAG00000034694	PPARGC1A	72	76.531	Pan_paniscus
ENSKMAG00000005390	ppargc1a	100	55.148	ENSPPRG00000001711	PPARGC1A	71	80.682	Panthera_pardus
ENSKMAG00000005390	ppargc1a	100	55.148	ENSPTIG00000007378	PPARGC1A	71	80.682	Panthera_tigris_altaica
ENSKMAG00000005390	ppargc1a	91	81.098	ENSPTRG00000015954	PPARGC1A	72	76.531	Pan_troglodytes
ENSKMAG00000005390	ppargc1a	91	81.098	ENSPANG00000005420	PPARGC1A	69	80.625	Papio_anubis
ENSKMAG00000005390	ppargc1a	90	74.372	ENSPKIG00000002531	ppargc1a	69	71.967	Paramormyrops_kingsleyae
ENSKMAG00000005390	ppargc1a	91	81.250	ENSPSIG00000011790	PPARGC1A	71	81.250	Pelodiscus_sinensis
ENSKMAG00000005390	ppargc1a	65	79.333	ENSPMGG00000019204	ppargc1a	100	69.190	Periophthalmus_magnuspinnatus
ENSKMAG00000005390	ppargc1a	91	78.788	ENSPEMG00000010892	Ppargc1a	90	75.127	Peromyscus_maniculatus_bairdii
ENSKMAG00000005390	ppargc1a	100	55.054	ENSPCIG00000015835	PPARGC1A	53	76.142	Phascolarctos_cinereus
ENSKMAG00000005390	ppargc1a	100	82.267	ENSPFOG00000001263	ppargc1a	100	83.316	Poecilia_formosa
ENSKMAG00000005390	ppargc1a	100	80.451	ENSPLAG00000002827	ppargc1a	99	95.082	Poecilia_latipinna
ENSKMAG00000005390	ppargc1a	95	96.053	ENSPMEG00000000720	ppargc1a	100	80.773	Poecilia_mexicana
ENSKMAG00000005390	ppargc1a	95	96.491	ENSPREG00000019171	ppargc1a	99	94.694	Poecilia_reticulata
ENSKMAG00000005390	ppargc1a	91	81.098	ENSPPYG00000014640	PPARGC1A	72	76.531	Pongo_abelii
ENSKMAG00000005390	ppargc1a	100	54.211	ENSPCAG00000016308	PPARGC1A	89	77.273	Procavia_capensis
ENSKMAG00000005390	ppargc1a	100	50.317	ENSPCOG00000022858	PPARGC1A	89	81.250	Propithecus_coquereli
ENSKMAG00000005390	ppargc1a	91	79.878	ENSPVAG00000004965	PPARGC1A	89	80.114	Pteropus_vampyrus
ENSKMAG00000005390	ppargc1a	95	93.277	ENSPNYG00000006846	ppargc1a	100	81.795	Pundamilia_nyererei
ENSKMAG00000005390	ppargc1a	93	96.053	ENSPNAG00000010393	ppargc1a	99	96.053	Pygocentrus_nattereri
ENSKMAG00000005390	ppargc1a	91	78.049	ENSRNOG00000004473	Ppargc1a	72	73.980	Rattus_norvegicus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSRBIG00000032333	PPARGC1A	71	81.250	Rhinopithecus_bieti
ENSKMAG00000005390	ppargc1a	91	81.098	ENSRROG00000010419	PPARGC1A	71	81.250	Rhinopithecus_roxellana
ENSKMAG00000005390	ppargc1a	91	81.098	ENSSBOG00000006423	PPARGC1A	70	79.755	Saimiri_boliviensis_boliviensis
ENSKMAG00000005390	ppargc1a	100	49.682	ENSSFOG00015018522	ppargc1a	90	72.671	Scleropages_formosus
ENSKMAG00000005390	ppargc1a	95	76.923	ENSSFOG00015001633	ppargc1a	77	71.901	Scleropages_formosus
ENSKMAG00000005390	ppargc1a	93	96.930	ENSSMAG00000011571	ppargc1a	87	94.715	Scophthalmus_maximus
ENSKMAG00000005390	ppargc1a	100	79.203	ENSSDUG00000007408	ppargc1a	97	97.414	Seriola_dumerili
ENSKMAG00000005390	ppargc1a	98	81.974	ENSSLDG00000006987	ppargc1a	100	78.059	Seriola_lalandi_dorsalis
ENSKMAG00000005390	ppargc1a	89	78.400	ENSSARG00000000575	PPARGC1A	89	61.364	Sorex_araneus
ENSKMAG00000005390	ppargc1a	91	82.317	ENSSPUG00000013556	PPARGC1A	51	82.386	Sphenodon_punctatus
ENSKMAG00000005390	ppargc1a	92	95.238	ENSSPAG00000023514	ppargc1a	99	95.510	Stegastes_partitus
ENSKMAG00000005390	ppargc1a	91	81.098	ENSSSCG00000029275	PPARGC1A	89	81.250	Sus_scrofa
ENSKMAG00000005390	ppargc1a	87	80.588	ENSTRUG00000007210	ppargc1a	83	80.531	Takifugu_rubripes
ENSKMAG00000005390	ppargc1a	91	81.212	ENSTTRG00000005327	PPARGC1A	80	81.212	Tursiops_truncatus
ENSKMAG00000005390	ppargc1a	86	80.982	ENSUAMG00000020843	PPARGC1A	66	81.143	Ursus_americanus
ENSKMAG00000005390	ppargc1a	90	81.098	ENSUMAG00000003557	PPARGC1A	70	81.250	Ursus_maritimus
ENSKMAG00000005390	ppargc1a	84	80.606	ENSVPAG00000003478	PPARGC1A	82	80.682	Vicugna_pacos
ENSKMAG00000005390	ppargc1a	91	81.098	ENSVVUG00000013365	PPARGC1A	71	81.250	Vulpes_vulpes
ENSKMAG00000005390	ppargc1a	91	79.545	ENSXETG00000020468	ppargc1a	78	79.545	Xenopus_tropicalis
ENSKMAG00000005390	ppargc1a	98	96.053	ENSXCOG00000004835	ppargc1a	100	80.591	Xiphophorus_couchianus
ENSKMAG00000005390	ppargc1a	95	95.614	ENSXMAG00000007748	ppargc1a	69	94.309	Xiphophorus_maculatus