EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000005540 (Gene tree)
Gene ID: 108239411
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 4660 bases
Position: chrLWHD01000065.1:410601-415260
Accession: 108239411
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007358	PRP38	PF03371.15	9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000007476	-	2333	XM_017422105	ENSKMAP00000007358	471 (aa)	XP_017277594	UPI0007F9046F

Gene Model

Click here to download ENSKMAG00000005540's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005540	-	100	85.865	ENSATEG00000014482	-	100	85.654	Anabas_testudineus
ENSKMAG00000005540	-	58	82.117	ENSBTAG00000047874	PRPF38B	81	61.407	Bos_taurus
ENSKMAG00000005540	-	58	46.886	WBGene00022434	Y108G3AL.2	66	52.752	Caenorhabditis_elegans
ENSKMAG00000005540	-	57	66.300	ENSCAFG00020010992	-	90	52.087	Canis_lupus_dingo
ENSKMAG00000005540	-	58	82.117	ENSCHIG00000024357	-	81	61.407	Capra_hircus
ENSKMAG00000005540	-	79	68.817	ENSCPOG00000039545	-	80	61.388	Cavia_porcellus
ENSKMAG00000005540	-	57	82.222	ENSCLAG00000005801	-	80	61.002	Chinchilla_lanigera
ENSKMAG00000005540	-	100	80.421	ENSCSEG00000015030	-	100	80.211	Cynoglossus_semilaevis
ENSKMAG00000005540	-	85	65.185	ENSETEG00000014690	-	91	61.239	Echinops_telfairi
ENSKMAG00000005540	-	100	63.931	ENSELUG00000010390	-	97	64.943	Esox_lucius
ENSKMAG00000005540	-	100	71.636	ENSGMOG00000012080	-	99	71.518	Gadus_morhua
ENSKMAG00000005540	-	97	58.974	ENSGALG00000001972	-	90	61.462	Gallus_gallus
ENSKMAG00000005540	-	100	82.030	ENSGAFG00000008943	-	100	82.241	Gambusia_affinis
ENSKMAG00000005540	-	99	61.176	ENSGAGG00000001563	-	83	60.950	Gopherus_agassizii
ENSKMAG00000005540	-	79	68.984	ENSHGLG00000016583	PRPF38B	80	61.171	Heterocephalus_glaber_female
ENSKMAG00000005540	-	79	69.251	ENSHGLG00100015525	-	80	61.388	Heterocephalus_glaber_male
ENSKMAG00000005540	-	100	79.114	ENSHCOG00000001071	-	100	78.481	Hippocampus_comes
ENSKMAG00000005540	-	97	58.858	ENSLACG00000015511	-	94	57.500	Latimeria_chalumnae
ENSKMAG00000005540	-	57	82.222	ENSMOCG00000020285	-	82	61.853	Microtus_ochrogaster
ENSKMAG00000005540	-	100	82.278	ENSMMOG00000011639	-	100	81.857	Mola_mola
ENSKMAG00000005540	-	65	76.873	ENSMODG00000002350	-	87	81.685	Monodelphis_domestica
ENSKMAG00000005540	-	100	85.865	ENSMALG00000019479	-	100	85.654	Monopterus_albus
ENSKMAG00000005540	-	100	84.810	ENSONIG00000010129	-	100	82.068	Oreochromis_niloticus
ENSKMAG00000005540	-	87	64.578	ENSOANG00000007343	-	65	79.859	Ornithorhynchus_anatinus
ENSKMAG00000005540	-	100	84.144	ENSORLG00000015621	-	95	97.561	Oryzias_latipes
ENSKMAG00000005540	-	100	84.144	ENSORLG00020016276	-	94	97.561	Oryzias_latipes_hni
ENSKMAG00000005540	-	100	84.355	ENSORLG00015016270	-	100	84.144	Oryzias_latipes_hsok
ENSKMAG00000005540	-	100	85.412	ENSOMEG00000022050	-	97	96.988	Oryzias_melastigma
ENSKMAG00000005540	-	97	59.118	ENSOGAG00000027048	-	90	58.918	Otolemur_garnettii
ENSKMAG00000005540	-	56	83.019	ENSOARG00000018899	-	87	58.607	Ovis_aries
ENSKMAG00000005540	-	94	64.668	ENSPKIG00000004815	-	94	64.301	Paramormyrops_kingsleyae
ENSKMAG00000005540	-	100	64.892	ENSPKIG00000017291	-	90	63.030	Paramormyrops_kingsleyae
ENSKMAG00000005540	-	100	82.030	ENSPFOG00000004025	-	87	95.732	Poecilia_formosa
ENSKMAG00000005540	-	100	82.030	ENSPLAG00000019842	-	100	82.241	Poecilia_latipinna
ENSKMAG00000005540	-	100	81.818	ENSPMEG00000004807	-	97	82.030	Poecilia_mexicana
ENSKMAG00000005540	-	100	81.607	ENSPREG00000015599	-	89	95.732	Poecilia_reticulata
ENSKMAG00000005540	-	59	82.374	ENSPNAG00000017484	-	95	63.636	Pygocentrus_nattereri
ENSKMAG00000005540	-	57	81.852	ENSRNOG00000020438	Prpf38b	80	60.814	Rattus_norvegicus
ENSKMAG00000005540	-	94	63.029	ENSSFOG00015011251	-	85	87.195	Scleropages_formosus
ENSKMAG00000005540	-	100	85.895	ENSSLDG00000023487	-	100	86.105	Seriola_lalandi_dorsalis
ENSKMAG00000005540	-	99	81.780	ENSTRUG00000011765	-	100	81.356	Takifugu_rubripes
ENSKMAG00000005540	-	97	79.365	ENSTNIG00000015299	-	99	64.979	Tetraodon_nigroviridis
ENSKMAG00000005540	-	57	72.794	ENSTBEG00000007504	-	85	55.120	Tupaia_belangeri
ENSKMAG00000005540	-	57	82.353	ENSTTRG00000006479	-	90	59.319	Tursiops_truncatus
ENSKMAG00000005540	-	56	68.939	ENSVPAG00000005541	-	90	51.904	Vicugna_pacos
ENSKMAG00000005540	-	95	57.464	ENSXETG00000005260	prpf38b	96	57.661	Xenopus_tropicalis
ENSKMAG00000005540	-	100	83.932	ENSXCOG00000008329	-	100	82.452	Xiphophorus_couchianus
ENSKMAG00000005540	-	100	83.510	ENSXMAG00000023831	-	100	82.030	Xiphophorus_maculatus