EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000005541 (Gene tree)
Gene ID: 108230776
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 61733 bases
Position: chrLWHD01000009.1:6026049-6087781
Accession: 108230776
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007570	ResIII	PF04851.15	2.1e-07	1	1
ENSKMAP00000007587	ResIII	PF04851.15	2.1e-07	1	1
ENSKMAP00000007517	ResIII	PF04851.15	2.3e-07	1	1
ENSKMAP00000007480	ResIII	PF04851.15	2.4e-07	1	1
ENSKMAP00000007662	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000007600	-	5453	XM_017407287	ENSKMAP00000007480	1568 (aa)	XP_017262776	UPI0007F8D5F8
ENSKMAT00000007689	-	5233	XM_017407291	ENSKMAP00000007570	1488 (aa)	XP_017262780	-
ENSKMAT00000007783	-	4290	-	ENSKMAP00000007662	1429 (aa)	-	-
ENSKMAT00000007636	-	5369	XM_017407289	ENSKMAP00000007517	1540 (aa)	XP_017262778	UPI0007F8986F
ENSKMAT00000007707	-	5040	XM_017407290	ENSKMAP00000007587	1496 (aa)	XP_017262779	-

Gene Model

Click here to download ENSKMAG00000005541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005541's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000005541	si:ch73-63e15.2	66	63.719	ENSKMAG00000009696	sbno1	77	64.450

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005541	si:ch73-63e15.2	77	68.174	ENSG00000064932	SBNO2	88	68.713	Homo_sapiens
ENSKMAG00000005541	si:ch73-63e15.2	100	81.688	ENSAPOG00000003185	si:ch73-63e15.2	100	81.626	Acanthochromis_polyacanthus
ENSKMAG00000005541	si:ch73-63e15.2	100	81.503	ENSAOCG00000016581	si:ch73-63e15.2	94	88.772	Amphiprion_ocellaris
ENSKMAG00000005541	si:ch73-63e15.2	100	81.409	ENSAPEG00000008862	si:ch73-63e15.2	100	82.295	Amphiprion_percula
ENSKMAG00000005541	si:ch73-63e15.2	91	82.564	ENSATEG00000023838	si:ch73-63e15.2	99	85.182	Anabas_testudineus
ENSKMAG00000005541	si:ch73-63e15.2	76	72.814	ENSAPLG00000007158	SBNO2	89	72.727	Anas_platyrhynchos
ENSKMAG00000005541	si:ch73-63e15.2	77	67.805	ENSANAG00000026685	SBNO2	90	67.833	Aotus_nancymaae
ENSKMAG00000005541	si:ch73-63e15.2	100	77.704	ENSACLG00000005090	si:ch73-63e15.2	100	77.256	Astatotilapia_calliptera
ENSKMAG00000005541	si:ch73-63e15.2	81	75.658	ENSAMXG00000018868	sbno2a	97	78.447	Astyanax_mexicanus
ENSKMAG00000005541	si:ch73-63e15.2	80	78.872	ENSAMXG00000015881	si:ch73-63e15.2	86	79.526	Astyanax_mexicanus
ENSKMAG00000005541	si:ch73-63e15.2	77	69.290	ENSBTAG00000020780	SBNO2	88	69.444	Bos_taurus
ENSKMAG00000005541	si:ch73-63e15.2	76	69.637	ENSCAFG00000019543	SBNO2	90	65.280	Canis_familiaris
ENSKMAG00000005541	si:ch73-63e15.2	76	69.637	ENSCAFG00020017115	SBNO2	95	65.682	Canis_lupus_dingo
ENSKMAG00000005541	si:ch73-63e15.2	77	69.211	ENSCHIG00000026127	SBNO2	86	69.324	Capra_hircus
ENSKMAG00000005541	si:ch73-63e15.2	76	68.206	ENSCAPG00000005731	SBNO2	97	66.218	Cavia_aperea
ENSKMAG00000005541	si:ch73-63e15.2	76	67.997	ENSCPOG00000007477	SBNO2	89	65.890	Cavia_porcellus
ENSKMAG00000005541	si:ch73-63e15.2	77	67.662	ENSCCAG00000037518	SBNO2	90	67.945	Cebus_capucinus
ENSKMAG00000005541	si:ch73-63e15.2	77	68.457	ENSCATG00000037046	SBNO2	88	68.713	Cercocebus_atys
ENSKMAG00000005541	si:ch73-63e15.2	77	69.224	ENSCLAG00000010178	SBNO2	99	68.966	Chinchilla_lanigera
ENSKMAG00000005541	si:ch73-63e15.2	76	69.058	ENSCSAG00000012317	SBNO2	84	69.317	Chlorocebus_sabaeus
ENSKMAG00000005541	si:ch73-63e15.2	77	69.837	ENSCPBG00000008920	SBNO2	94	68.058	Chrysemys_picta_bellii
ENSKMAG00000005541	si:ch73-63e15.2	73	68.863	ENSCANG00000036745	SBNO2	96	68.571	Colobus_angolensis_palliatus
ENSKMAG00000005541	si:ch73-63e15.2	76	67.624	ENSCGRG00001023960	Sbno2	85	67.186	Cricetulus_griseus_chok1gshd
ENSKMAG00000005541	si:ch73-63e15.2	76	68.957	ENSCGRG00000011984	Sbno2	85	68.576	Cricetulus_griseus_crigri
ENSKMAG00000005541	si:ch73-63e15.2	79	83.263	ENSCSEG00000006856	si:ch73-63e15.2	99	85.195	Cynoglossus_semilaevis
ENSKMAG00000005541	si:ch73-63e15.2	99	78.909	ENSCVAG00000005663	si:ch73-63e15.2	100	78.909	Cyprinodon_variegatus
ENSKMAG00000005541	si:ch73-63e15.2	78	77.425	ENSDARG00000098801	sbno2a	91	75.080	Danio_rerio
ENSKMAG00000005541	si:ch73-63e15.2	99	68.896	ENSDARG00000016188	SBNO2	99	68.892	Danio_rerio
ENSKMAG00000005541	si:ch73-63e15.2	77	69.039	ENSDORG00000002916	Sbno2	88	66.915	Dipodomys_ordii
ENSKMAG00000005541	si:ch73-63e15.2	77	69.046	ENSEASG00005021621	SBNO2	89	68.734	Equus_asinus_asinus
ENSKMAG00000005541	si:ch73-63e15.2	77	69.132	ENSECAG00000011827	SBNO2	89	68.819	Equus_caballus
ENSKMAG00000005541	si:ch73-63e15.2	99	73.016	ENSELUG00000020457	si:ch73-63e15.2	99	72.211	Esox_lucius
ENSKMAG00000005541	si:ch73-63e15.2	77	71.880	ENSFALG00000013988	SBNO2	86	71.199	Ficedula_albicollis
ENSKMAG00000005541	si:ch73-63e15.2	75	67.551	ENSFDAG00000015186	SBNO2	86	67.845	Fukomys_damarensis
ENSKMAG00000005541	si:ch73-63e15.2	100	79.560	ENSFHEG00000022262	si:ch73-63e15.2	100	80.679	Fundulus_heteroclitus
ENSKMAG00000005541	si:ch73-63e15.2	77	87.018	ENSGMOG00000007542	si:ch73-63e15.2	95	87.018	Gadus_morhua
ENSKMAG00000005541	si:ch73-63e15.2	80	71.063	ENSGALG00000037522	SBNO2	95	65.874	Gallus_gallus
ENSKMAG00000005541	si:ch73-63e15.2	80	88.517	ENSGAFG00000004860	si:ch73-63e15.2	93	90.403	Gambusia_affinis
ENSKMAG00000005541	si:ch73-63e15.2	76	88.599	ENSGACG00000013190	si:ch73-63e15.2	96	88.322	Gasterosteus_aculeatus
ENSKMAG00000005541	si:ch73-63e15.2	87	67.043	ENSGAGG00000008348	SBNO2	95	67.145	Gopherus_agassizii
ENSKMAG00000005541	si:ch73-63e15.2	100	77.851	ENSHBUG00000010742	si:ch73-63e15.2	100	77.653	Haplochromis_burtoni
ENSKMAG00000005541	si:ch73-63e15.2	76	69.437	ENSHGLG00000008739	SBNO2	88	67.279	Heterocephalus_glaber_female
ENSKMAG00000005541	si:ch73-63e15.2	77	69.039	ENSHGLG00100005269	SBNO2	99	68.782	Heterocephalus_glaber_male
ENSKMAG00000005541	si:ch73-63e15.2	82	81.804	ENSHCOG00000000884	si:ch73-63e15.2	96	81.412	Hippocampus_comes
ENSKMAG00000005541	si:ch73-63e15.2	79	79.216	ENSIPUG00000019672	sbno2	99	75.942	Ictalurus_punctatus
ENSKMAG00000005541	si:ch73-63e15.2	80	78.469	ENSIPUG00000000537	si:ch73-63e15.2	87	78.469	Ictalurus_punctatus
ENSKMAG00000005541	si:ch73-63e15.2	76	68.858	ENSSTOG00000025832	SBNO2	90	65.838	Ictidomys_tridecemlineatus
ENSKMAG00000005541	si:ch73-63e15.2	76	66.465	ENSJJAG00000017397	Sbno2	85	66.667	Jaculus_jaculus
ENSKMAG00000005541	si:ch73-63e15.2	99	78.489	ENSLBEG00000025016	si:ch73-63e15.2	99	88.924	Labrus_bergylta
ENSKMAG00000005541	si:ch73-63e15.2	78	83.590	ENSLOCG00000004643	si:ch73-63e15.2	85	84.055	Lepisosteus_oculatus
ENSKMAG00000005541	si:ch73-63e15.2	76	65.601	ENSLAFG00000008824	SBNO2	89	66.227	Loxodonta_africana
ENSKMAG00000005541	si:ch73-63e15.2	77	66.780	ENSMFAG00000040030	SBNO2	91	67.036	Macaca_fascicularis
ENSKMAG00000005541	si:ch73-63e15.2	76	69.058	ENSMMUG00000010886	SBNO2	87	67.854	Macaca_mulatta
ENSKMAG00000005541	si:ch73-63e15.2	77	68.457	ENSMNEG00000039927	SBNO2	89	68.713	Macaca_nemestrina
ENSKMAG00000005541	si:ch73-63e15.2	70	69.634	ENSMLEG00000038556	SBNO2	91	69.916	Mandrillus_leucophaeus
ENSKMAG00000005541	si:ch73-63e15.2	99	79.896	ENSMAMG00000018758	si:ch73-63e15.2	100	79.830	Mastacembelus_armatus
ENSKMAG00000005541	si:ch73-63e15.2	100	77.690	ENSMZEG00005010682	si:ch73-63e15.2	100	77.241	Maylandia_zebra
ENSKMAG00000005541	si:ch73-63e15.2	77	71.791	ENSMGAG00000003801	SBNO2	91	71.706	Meleagris_gallopavo
ENSKMAG00000005541	si:ch73-63e15.2	76	69.411	ENSMAUG00000008034	Sbno2	85	69.418	Mesocricetus_auratus
ENSKMAG00000005541	si:ch73-63e15.2	78	68.511	ENSMICG00000013071	SBNO2	88	69.384	Microcebus_murinus
ENSKMAG00000005541	si:ch73-63e15.2	76	68.971	ENSMOCG00000010504	Sbno2	85	68.712	Microtus_ochrogaster
ENSKMAG00000005541	si:ch73-63e15.2	81	69.438	ENSMODG00000005382	SBNO2	90	67.578	Monodelphis_domestica
ENSKMAG00000005541	si:ch73-63e15.2	63	82.428	ENSMALG00000021831	si:ch73-63e15.2	99	82.428	Monopterus_albus
ENSKMAG00000005541	si:ch73-63e15.2	76	68.398	ENSMUSG00000035673	Sbno2	93	68.609	Mus_musculus
ENSKMAG00000005541	si:ch73-63e15.2	76	68.544	MGP_PahariEiJ_G0030976	Sbno2	85	68.485	Mus_pahari
ENSKMAG00000005541	si:ch73-63e15.2	76	68.718	MGP_SPRETEiJ_G0016381	Sbno2	91	68.658	Mus_spretus
ENSKMAG00000005541	si:ch73-63e15.2	65	71.658	ENSMPUG00000008747	SBNO2	91	71.558	Mustela_putorius_furo
ENSKMAG00000005541	si:ch73-63e15.2	76	68.194	ENSNGAG00000004308	Sbno2	86	68.261	Nannospalax_galili
ENSKMAG00000005541	si:ch73-63e15.2	81	87.420	ENSNBRG00000022968	si:ch73-63e15.2	99	89.215	Neolamprologus_brichardi
ENSKMAG00000005541	si:ch73-63e15.2	71	69.976	ENSNLEG00000001305	SBNO2	87	69.976	Nomascus_leucogenys
ENSKMAG00000005541	si:ch73-63e15.2	62	67.834	ENSMEUG00000013511	-	78	67.728	Notamacropus_eugenii
ENSKMAG00000005541	si:ch73-63e15.2	74	69.101	ENSOPRG00000017238	SBNO2	94	69.075	Ochotona_princeps
ENSKMAG00000005541	si:ch73-63e15.2	77	67.775	ENSODEG00000011822	SBNO2	89	66.389	Octodon_degus
ENSKMAG00000005541	si:ch73-63e15.2	100	78.350	ENSONIG00000002490	si:ch73-63e15.2	94	87.276	Oreochromis_niloticus
ENSKMAG00000005541	si:ch73-63e15.2	100	77.456	ENSORLG00000000913	si:ch73-63e15.2	100	77.947	Oryzias_latipes
ENSKMAG00000005541	si:ch73-63e15.2	100	77.390	ENSORLG00020010978	si:ch73-63e15.2	100	77.881	Oryzias_latipes_hni
ENSKMAG00000005541	si:ch73-63e15.2	100	77.324	ENSORLG00015000202	si:ch73-63e15.2	100	77.815	Oryzias_latipes_hsok
ENSKMAG00000005541	si:ch73-63e15.2	100	78.152	ENSOMEG00000000359	si:ch73-63e15.2	100	77.650	Oryzias_melastigma
ENSKMAG00000005541	si:ch73-63e15.2	76	66.667	ENSOARG00000011130	SBNO2	86	66.319	Ovis_aries
ENSKMAG00000005541	si:ch73-63e15.2	77	67.174	ENSPPAG00000032482	SBNO2	91	67.709	Pan_paniscus
ENSKMAG00000005541	si:ch73-63e15.2	77	68.089	ENSPTRG00000010185	SBNO2	89	68.627	Pan_troglodytes
ENSKMAG00000005541	si:ch73-63e15.2	77	64.876	ENSPANG00000009658	SBNO2	88	65.132	Papio_anubis
ENSKMAG00000005541	si:ch73-63e15.2	91	83.129	ENSPKIG00000024201	si:ch73-63e15.2	85	82.137	Paramormyrops_kingsleyae
ENSKMAG00000005541	si:ch73-63e15.2	68	78.137	ENSPKIG00000009707	-	84	78.137	Paramormyrops_kingsleyae
ENSKMAG00000005541	si:ch73-63e15.2	64	73.882	ENSPSIG00000002852	SBNO2	99	73.679	Pelodiscus_sinensis
ENSKMAG00000005541	si:ch73-63e15.2	80	82.805	ENSPMGG00000014375	si:ch73-63e15.2	96	79.124	Periophthalmus_magnuspinnatus
ENSKMAG00000005541	si:ch73-63e15.2	76	66.954	ENSPEMG00000024122	Sbno2	85	67.368	Peromyscus_maniculatus_bairdii
ENSKMAG00000005541	si:ch73-63e15.2	81	69.369	ENSPCIG00000011264	SBNO2	87	69.469	Phascolarctos_cinereus
ENSKMAG00000005541	si:ch73-63e15.2	100	78.229	ENSPFOG00000004096	si:ch73-63e15.2	100	87.381	Poecilia_formosa
ENSKMAG00000005541	si:ch73-63e15.2	99	79.012	ENSPLAG00000014653	si:ch73-63e15.2	100	78.762	Poecilia_latipinna
ENSKMAG00000005541	si:ch73-63e15.2	100	78.679	ENSPMEG00000002129	si:ch73-63e15.2	96	84.683	Poecilia_mexicana
ENSKMAG00000005541	si:ch73-63e15.2	100	78.135	ENSPREG00000006755	si:ch73-63e15.2	100	78.156	Poecilia_reticulata
ENSKMAG00000005541	si:ch73-63e15.2	71	68.406	ENSPCAG00000012256	SBNO2	79	67.940	Procavia_capensis
ENSKMAG00000005541	si:ch73-63e15.2	77	62.564	ENSPCOG00000015216	SBNO2	88	62.596	Propithecus_coquereli
ENSKMAG00000005541	si:ch73-63e15.2	100	77.888	ENSPNYG00000019926	si:ch73-63e15.2	100	77.756	Pundamilia_nyererei
ENSKMAG00000005541	si:ch73-63e15.2	80	80.285	ENSPNAG00000020260	si:ch73-63e15.2	86	81.197	Pygocentrus_nattereri
ENSKMAG00000005541	si:ch73-63e15.2	78	78.770	ENSPNAG00000026609	sbno2a	99	70.349	Pygocentrus_nattereri
ENSKMAG00000005541	si:ch73-63e15.2	76	69.251	ENSRNOG00000013987	Sbno2	89	69.191	Rattus_norvegicus
ENSKMAG00000005541	si:ch73-63e15.2	71	66.789	ENSRBIG00000009740	SBNO2	86	68.381	Rhinopithecus_bieti
ENSKMAG00000005541	si:ch73-63e15.2	67	71.879	ENSRROG00000044671	SBNO2	86	70.868	Rhinopithecus_roxellana
ENSKMAG00000005541	si:ch73-63e15.2	77	67.662	ENSSBOG00000023562	SBNO2	90	67.945	Saimiri_boliviensis_boliviensis
ENSKMAG00000005541	si:ch73-63e15.2	75	71.927	ENSSHAG00000010241	SBNO2	98	71.840	Sarcophilus_harrisii
ENSKMAG00000005541	si:ch73-63e15.2	78	80.822	ENSSFOG00015005861	si:ch73-63e15.2	94	80.838	Scleropages_formosus
ENSKMAG00000005541	si:ch73-63e15.2	100	78.931	ENSSMAG00000012489	si:ch73-63e15.2	100	80.995	Scophthalmus_maximus
ENSKMAG00000005541	si:ch73-63e15.2	100	79.685	ENSSDUG00000003527	si:ch73-63e15.2	100	81.613	Seriola_dumerili
ENSKMAG00000005541	si:ch73-63e15.2	100	79.563	ENSSLDG00000004623	si:ch73-63e15.2	100	81.484	Seriola_lalandi_dorsalis
ENSKMAG00000005541	si:ch73-63e15.2	99	81.895	ENSSPAG00000017717	si:ch73-63e15.2	100	82.050	Stegastes_partitus
ENSKMAG00000005541	si:ch73-63e15.2	77	69.416	ENSSSCG00000030042	SBNO2	90	68.734	Sus_scrofa
ENSKMAG00000005541	si:ch73-63e15.2	74	87.545	ENSTRUG00000018193	si:ch73-63e15.2	86	88.198	Takifugu_rubripes
ENSKMAG00000005541	si:ch73-63e15.2	70	70.633	ENSUAMG00000006568	SBNO2	93	71.214	Ursus_americanus
ENSKMAG00000005541	si:ch73-63e15.2	76	69.550	ENSVVUG00000022823	SBNO2	82	69.291	Vulpes_vulpes
ENSKMAG00000005541	si:ch73-63e15.2	69	75.506	ENSXETG00000021579	sbno2	90	76.316	Xenopus_tropicalis
ENSKMAG00000005541	si:ch73-63e15.2	88	87.987	ENSXCOG00000009209	si:ch73-63e15.2	94	89.967	Xiphophorus_couchianus
ENSKMAG00000005541	si:ch73-63e15.2	100	78.991	ENSXMAG00000012091	si:ch73-63e15.2	92	89.422	Xiphophorus_maculatus