EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000005742 (Gene tree)
Gene ID: 108236028
Gene Symbol: scaf4b
Alias: im:6900467|si:ch211-245g11.2
Full Name: splicing factor%2C arginine/serine-rich 15-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 21602 bases
Position: chrLWHD01000037.1:2033439-2055040
Accession: 108236028
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007635	RRM_1	PF00076.22	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000007756	-	3042	XM_017416444	ENSKMAP00000007635	757 (aa)	XP_017271933	UPI0007F933C0

Gene Model

Click here to download ENSKMAG00000005742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005742	scaf4b	54	73.885	ENSG00000156304	SCAF4	60	57.971	Homo_sapiens
ENSKMAG00000005742	scaf4b	61	64.732	ENSAPOG00000002946	scaf4a	64	58.242	Acanthochromis_polyacanthus
ENSKMAG00000005742	scaf4b	100	75.263	ENSAPOG00000019615	scaf4b	100	75.921	Acanthochromis_polyacanthus
ENSKMAG00000005742	scaf4b	55	75.309	ENSAOCG00000000615	scaf4a	64	57.554	Amphiprion_ocellaris
ENSKMAG00000005742	scaf4b	100	76.913	ENSAOCG00000010433	scaf4b	100	76.913	Amphiprion_ocellaris
ENSKMAG00000005742	scaf4b	55	74.691	ENSAPEG00000021229	scaf4a	64	57.554	Amphiprion_percula
ENSKMAG00000005742	scaf4b	100	76.649	ENSAPEG00000010913	scaf4b	100	76.649	Amphiprion_percula
ENSKMAG00000005742	scaf4b	98	68.892	ENSATEG00000011758	scaf4b	100	70.093	Anabas_testudineus
ENSKMAG00000005742	scaf4b	56	73.563	ENSAPLG00000002509	SCAF4	63	57.303	Anas_platyrhynchos
ENSKMAG00000005742	scaf4b	100	73.219	ENSACLG00000024833	scaf4b	100	72.823	Astatotilapia_calliptera
ENSKMAG00000005742	scaf4b	71	58.608	ENSAMXG00000008585	scaf4a	61	58.974	Astyanax_mexicanus
ENSKMAG00000005742	scaf4b	59	69.231	ENSCJAG00000008993	SCAF4	71	57.831	Callithrix_jacchus
ENSKMAG00000005742	scaf4b	52	74.522	ENSCAFG00020026019	SCAF4	69	57.519	Canis_lupus_dingo
ENSKMAG00000005742	scaf4b	54	74.522	ENSCPOG00000012443	SCAF4	60	57.500	Cavia_porcellus
ENSKMAG00000005742	scaf4b	59	68.878	ENSCANG00000029847	SCAF4	51	58.268	Colobus_angolensis_palliatus
ENSKMAG00000005742	scaf4b	100	61.097	ENSCSEG00000012808	-	99	62.712	Cynoglossus_semilaevis
ENSKMAG00000005742	scaf4b	72	51.471	ENSCSEG00000019549	scaf4a	65	49.405	Cynoglossus_semilaevis
ENSKMAG00000005742	scaf4b	100	72.691	ENSCVAG00000009142	scaf4b	100	72.691	Cyprinodon_variegatus
ENSKMAG00000005742	scaf4b	52	70.423	ENSDARG00000018854	scaf4b	75	57.042	Danio_rerio
ENSKMAG00000005742	scaf4b	60	48.485	ENSEBUG00000003891	SCAF8	53	50.554	Eptatretus_burgeri
ENSKMAG00000005742	scaf4b	100	75.826	ENSFHEG00000007634	scaf4b	100	75.826	Fundulus_heteroclitus
ENSKMAG00000005742	scaf4b	52	69.930	ENSGMOG00000015188	scaf4a	51	59.434	Gadus_morhua
ENSKMAG00000005742	scaf4b	56	73.563	ENSGALG00000033965	SCAF4	64	58.519	Gallus_gallus
ENSKMAG00000005742	scaf4b	56	63.784	ENSGAFG00000019460	scaf4a	56	60.965	Gambusia_affinis
ENSKMAG00000005742	scaf4b	54	66.250	ENSGACG00000020580	scaf4a	64	58.077	Gasterosteus_aculeatus
ENSKMAG00000005742	scaf4b	54	73.885	ENSGGOG00000015557	SCAF4	55	57.971	Gorilla_gorilla
ENSKMAG00000005742	scaf4b	58	61.386	ENSHBUG00000007920	scaf4a	60	58.759	Haplochromis_burtoni
ENSKMAG00000005742	scaf4b	52	62.245	ENSHBUG00000019537	SCAF8	50	43.642	Haplochromis_burtoni
ENSKMAG00000005742	scaf4b	51	63.441	ENSHCOG00000006849	scaf4a	67	62.562	Hippocampus_comes
ENSKMAG00000005742	scaf4b	53	76.351	ENSIPUG00000011285	scaf4	89	46.084	Ictalurus_punctatus
ENSKMAG00000005742	scaf4b	53	75.159	ENSJJAG00000019447	Scaf4	58	55.200	Jaculus_jaculus
ENSKMAG00000005742	scaf4b	66	52.439	ENSLACG00000013913	SCAF4	65	54.472	Latimeria_chalumnae
ENSKMAG00000005742	scaf4b	71	61.049	ENSLOCG00000009162	scaf4a	85	44.884	Lepisosteus_oculatus
ENSKMAG00000005742	scaf4b	52	73.239	ENSMZEG00005024349	scaf4a	60	58.029	Maylandia_zebra
ENSKMAG00000005742	scaf4b	56	73.563	ENSMGAG00000014515	SCAF4	64	57.854	Meleagris_gallopavo
ENSKMAG00000005742	scaf4b	54	74.522	ENSMOCG00000012087	Scaf4	57	60.920	Microtus_ochrogaster
ENSKMAG00000005742	scaf4b	58	61.376	ENSMALG00000013825	scaf4a	69	55.882	Monopterus_albus
ENSKMAG00000005742	scaf4b	54	75.159	MGP_CAROLIEiJ_G0020944	Scaf4	57	59.770	Mus_caroli
ENSKMAG00000005742	scaf4b	54	75.159	ENSMUSG00000022983	Scaf4	57	59.770	Mus_musculus
ENSKMAG00000005742	scaf4b	54	75.159	MGP_PahariEiJ_G0016649	Scaf4	56	59.770	Mus_pahari
ENSKMAG00000005742	scaf4b	54	75.159	MGP_SPRETEiJ_G0021850	Scaf4	57	59.770	Mus_spretus
ENSKMAG00000005742	scaf4b	71	70.656	ENSONIG00000005610	scaf4b	99	62.166	Oreochromis_niloticus
ENSKMAG00000005742	scaf4b	52	72.535	ENSONIG00000004687	scaf4a	70	58.759	Oreochromis_niloticus
ENSKMAG00000005742	scaf4b	54	73.885	ENSOCUG00000008336	SCAF4	60	57.246	Oryctolagus_cuniculus
ENSKMAG00000005742	scaf4b	100	67.237	ENSORLG00000003420	scaf4b	100	68.857	Oryzias_latipes
ENSKMAG00000005742	scaf4b	100	66.711	ENSORLG00020013853	scaf4b	100	68.373	Oryzias_latipes_hni
ENSKMAG00000005742	scaf4b	58	65.128	ENSPKIG00000022408	scaf4a	68	63.426	Paramormyrops_kingsleyae
ENSKMAG00000005742	scaf4b	79	51.331	ENSPMGG00000016741	scaf4a	67	52.075	Periophthalmus_magnuspinnatus
ENSKMAG00000005742	scaf4b	52	57.447	ENSPMAG00000006192	SCAF8	68	58.000	Petromyzon_marinus
ENSKMAG00000005742	scaf4b	53	73.418	ENSPCIG00000028183	SCAF4	58	56.929	Phascolarctos_cinereus
ENSKMAG00000005742	scaf4b	96	53.252	ENSPFOG00000003261	scaf4b	76	70.849	Poecilia_formosa
ENSKMAG00000005742	scaf4b	100	71.103	ENSPLAG00000004403	-	100	70.976	Poecilia_latipinna
ENSKMAG00000005742	scaf4b	100	71.229	ENSPMEG00000006666	-	100	71.103	Poecilia_mexicana
ENSKMAG00000005742	scaf4b	100	70.380	ENSPREG00000013510	scaf4b	100	70.253	Poecilia_reticulata
ENSKMAG00000005742	scaf4b	54	73.885	ENSPCOG00000018710	SCAF4	61	57.971	Propithecus_coquereli
ENSKMAG00000005742	scaf4b	100	73.351	ENSPNYG00000010526	scaf4b	100	72.955	Pundamilia_nyererei
ENSKMAG00000005742	scaf4b	98	80.000	ENSPNAG00000015199	-	80	80.000	Pygocentrus_nattereri
ENSKMAG00000005742	scaf4b	54	75.159	ENSRNOG00000002104	Scaf4	61	55.702	Rattus_norvegicus
ENSKMAG00000005742	scaf4b	52	47.309	ENSSFOG00015006338	scaf4a	79	40.000	Scleropages_formosus
ENSKMAG00000005742	scaf4b	56	63.043	ENSSMAG00000017901	scaf4a	58	57.762	Scophthalmus_maximus
ENSKMAG00000005742	scaf4b	100	72.549	ENSSMAG00000003738	scaf4b	100	71.765	Scophthalmus_maximus
ENSKMAG00000005742	scaf4b	52	71.831	ENSSDUG00000012918	scaf4a	64	58.909	Seriola_dumerili
ENSKMAG00000005742	scaf4b	100	75.000	ENSSDUG00000012380	scaf4b	100	74.869	Seriola_dumerili
ENSKMAG00000005742	scaf4b	100	74.869	ENSSLDG00000023152	-	100	74.738	Seriola_lalandi_dorsalis
ENSKMAG00000005742	scaf4b	52	71.831	ENSSLDG00000021671	scaf4a	64	59.341	Seriola_lalandi_dorsalis
ENSKMAG00000005742	scaf4b	54	74.522	ENSSSCG00000021023	SCAF4	60	59.630	Sus_scrofa
ENSKMAG00000005742	scaf4b	52	73.548	ENSTGUG00000013464	SCAF4	59	59.615	Taeniopygia_guttata
ENSKMAG00000005742	scaf4b	100	58.256	ENSTRUG00000009536	-	100	58.256	Takifugu_rubripes
ENSKMAG00000005742	scaf4b	54	73.885	ENSUAMG00000008860	SCAF4	61	60.000	Ursus_americanus