EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000005905 (Gene tree)
Gene ID: 108239524
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 2770 bases
Position: chrLWHD01000065.1:639660-642429
Accession: 108239524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007859	RRM_1	PF00076.22	5.2e-26	1	1
ENSKMAP00000007868	RRM_1	PF00076.22	5.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000007992	-	715	XM_017422279	ENSKMAP00000007868	174 (aa)	XP_017277768	UPI0007F8B621
ENSKMAT00000007983	-	779	XM_017422280	ENSKMAP00000007859	172 (aa)	XP_017277769	-

Gene Model

Click here to download ENSKMAG00000005905's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005905's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005905	cirbpa	72	74.436	ENSAPOG00000004458	cirbpa	71	77.444	Acanthochromis_polyacanthus
ENSKMAG00000005905	cirbpa	99	81.714	ENSACIG00000016116	cirbpa	98	82.759	Amphilophus_citrinellus
ENSKMAG00000005905	cirbpa	99	67.760	ENSAOCG00000016212	cirbpa	98	71.505	Amphiprion_ocellaris
ENSKMAG00000005905	cirbpa	100	67.568	ENSAPEG00000011989	cirbpa	100	68.254	Amphiprion_percula
ENSKMAG00000005905	cirbpa	100	76.374	ENSATEG00000014985	cirbpa	100	78.804	Anabas_testudineus
ENSKMAG00000005905	cirbpa	100	81.564	ENSACLG00000002094	-	100	82.022	Astatotilapia_calliptera
ENSKMAG00000005905	cirbpa	100	59.184	ENSCSEG00000014344	cirbpa	100	61.735	Cynoglossus_semilaevis
ENSKMAG00000005905	cirbpa	100	73.626	ENSCVAG00000004853	cirbpa	100	76.374	Cyprinodon_variegatus
ENSKMAG00000005905	cirbpa	100	51.691	ENSDARG00000013351	cirbpb	92	57.488	Danio_rerio
ENSKMAG00000005905	cirbpa	100	54.011	ENSDARG00000103672	cirbpa	99	57.219	Danio_rerio
ENSKMAG00000005905	cirbpa	100	78.286	ENSFHEG00000002580	cirbpa	100	80.000	Fundulus_heteroclitus
ENSKMAG00000005905	cirbpa	99	49.261	ENSGMOG00000007179	cirbpb	97	51.000	Gadus_morhua
ENSKMAG00000005905	cirbpa	100	71.892	ENSGAFG00000008654	cirbpa	100	70.103	Gambusia_affinis
ENSKMAG00000005905	cirbpa	99	62.632	ENSGACG00000015206	cirbpa	98	65.426	Gasterosteus_aculeatus
ENSKMAG00000005905	cirbpa	100	77.049	ENSHBUG00000022060	cirbpa	100	79.121	Haplochromis_burtoni
ENSKMAG00000005905	cirbpa	100	60.541	ENSLBEG00000000292	cirbpa	100	62.500	Labrus_bergylta
ENSKMAG00000005905	cirbpa	100	74.457	ENSMAMG00000010168	cirbpa	100	77.717	Mastacembelus_armatus
ENSKMAG00000005905	cirbpa	100	77.049	ENSMZEG00005025577	-	100	79.121	Maylandia_zebra
ENSKMAG00000005905	cirbpa	100	73.481	ENSMALG00000020092	cirbpa	99	77.222	Monopterus_albus
ENSKMAG00000005905	cirbpa	100	77.049	ENSNBRG00000019658	cirbpa	100	79.121	Neolamprologus_brichardi
ENSKMAG00000005905	cirbpa	99	81.714	ENSONIG00000010169	cirbpa	98	82.184	Oreochromis_niloticus
ENSKMAG00000005905	cirbpa	100	77.143	ENSORLG00000015433	cirbpa	100	86.364	Oryzias_latipes
ENSKMAG00000005905	cirbpa	100	77.143	ENSORLG00020016909	cirbpa	100	86.364	Oryzias_latipes_hni
ENSKMAG00000005905	cirbpa	100	77.143	ENSORLG00015016636	cirbpa	100	86.364	Oryzias_latipes_hsok
ENSKMAG00000005905	cirbpa	100	82.558	ENSOMEG00000021469	cirbpa	73	84.571	Oryzias_melastigma
ENSKMAG00000005905	cirbpa	99	64.835	ENSPMGG00000017342	cirbpa	94	65.789	Periophthalmus_magnuspinnatus
ENSKMAG00000005905	cirbpa	100	70.053	ENSPFOG00000015653	cirbpa	100	70.918	Poecilia_formosa
ENSKMAG00000005905	cirbpa	100	70.492	ENSPLAG00000011125	cirbpa	100	71.354	Poecilia_latipinna
ENSKMAG00000005905	cirbpa	100	70.492	ENSPMEG00000013878	cirbpa	100	71.354	Poecilia_mexicana
ENSKMAG00000005905	cirbpa	99	74.586	ENSPREG00000018042	cirbpa	98	70.312	Poecilia_reticulata
ENSKMAG00000005905	cirbpa	100	76.882	ENSPNYG00000007198	-	100	78.919	Pundamilia_nyererei
ENSKMAG00000005905	cirbpa	100	53.171	ENSPNAG00000019997	cirbpb	100	56.931	Pygocentrus_nattereri
ENSKMAG00000005905	cirbpa	100	57.812	ENSSFOG00015005346	cirbpb	100	64.706	Scleropages_formosus
ENSKMAG00000005905	cirbpa	100	68.342	ENSSMAG00000002412	cirbpa	100	68.844	Scophthalmus_maximus
ENSKMAG00000005905	cirbpa	100	67.429	ENSSDUG00000016099	cirbpa	100	66.286	Seriola_dumerili
ENSKMAG00000005905	cirbpa	55	86.316	ENSSLDG00000011320	cirbpa	54	75.630	Seriola_lalandi_dorsalis
ENSKMAG00000005905	cirbpa	99	67.241	ENSSPAG00000023037	cirbpa	97	70.115	Stegastes_partitus
ENSKMAG00000005905	cirbpa	100	68.571	ENSTRUG00000010187	cirbpa	100	69.714	Takifugu_rubripes
ENSKMAG00000005905	cirbpa	100	70.879	ENSTNIG00000000450	cirbpa	100	71.351	Tetraodon_nigroviridis
ENSKMAG00000005905	cirbpa	99	74.586	ENSXCOG00000008262	cirbpa	92	86.301	Xiphophorus_couchianus
ENSKMAG00000005905	cirbpa	100	74.595	ENSXMAG00000019336	cirbpa	100	71.503	Xiphophorus_maculatus