EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000005944 (Gene tree)
Gene ID: 108242267
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 3268 bases
Position: chrLWHD01000099.1:800002-803269
Accession: 108242267
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000007905	zf-CCCH	PF00642.24	3.9e-29	1	4
ENSKMAP00000007905	zf-CCCH	PF00642.24	3.9e-29	2	4
ENSKMAP00000007905	zf-CCCH	PF00642.24	3.9e-29	3	4
ENSKMAP00000007905	zf-CCCH	PF00642.24	3.9e-29	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000008029	-	1679	XM_017427011	ENSKMAP00000007905	300 (aa)	XP_017282500	UPI0007F900E2

Gene Model

Click here to download ENSKMAG00000005944's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000005944's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000005944	cth1	89	65.328	ENSAPOG00000012552	cth1	95	65.328	Acanthochromis_polyacanthus
ENSKMAG00000005944	cth1	87	60.507	ENSACIG00000016026	cth1	99	55.836	Amphilophus_citrinellus
ENSKMAG00000005944	cth1	100	68.387	ENSAOCG00000001644	cth1	100	68.387	Amphiprion_ocellaris
ENSKMAG00000005944	cth1	100	68.387	ENSAPEG00000008930	cth1	100	68.387	Amphiprion_percula
ENSKMAG00000005944	cth1	99	63.889	ENSATEG00000002281	cth1	97	65.432	Anabas_testudineus
ENSKMAG00000005944	cth1	89	60.000	ENSACLG00000015353	cth1	95	60.000	Astatotilapia_calliptera
ENSKMAG00000005944	cth1	96	54.545	ENSAMXG00000025717	cth1	92	53.667	Astyanax_mexicanus
ENSKMAG00000005944	cth1	100	63.354	ENSCSEG00000014617	cth1	100	61.801	Cynoglossus_semilaevis
ENSKMAG00000005944	cth1	100	62.829	ENSCVAG00000001680	cth1	65	62.706	Cyprinodon_variegatus
ENSKMAG00000005944	cth1	90	54.237	ENSDARG00000057328	cth1	90	54.576	Danio_rerio
ENSKMAG00000005944	cth1	99	53.412	ENSELUG00000012738	cth1	68	61.207	Esox_lucius
ENSKMAG00000005944	cth1	100	67.516	ENSFHEG00000022665	cth1	100	66.561	Fundulus_heteroclitus
ENSKMAG00000005944	cth1	99	62.662	ENSGMOG00000007360	cth1	100	61.039	Gadus_morhua
ENSKMAG00000005944	cth1	100	62.145	ENSGAFG00000019288	cth1	100	60.883	Gambusia_affinis
ENSKMAG00000005944	cth1	99	65.472	ENSGACG00000000802	cth1	99	64.821	Gasterosteus_aculeatus
ENSKMAG00000005944	cth1	100	60.265	ENSHBUG00000014400	cth1	100	60.265	Haplochromis_burtoni
ENSKMAG00000005944	cth1	99	54.181	ENSHCOG00000010276	cth1	89	52.536	Hippocampus_comes
ENSKMAG00000005944	cth1	96	53.333	ENSIPUG00000018040	cth1	90	52.525	Ictalurus_punctatus
ENSKMAG00000005944	cth1	100	68.454	ENSLBEG00000019253	cth1	100	67.823	Labrus_bergylta
ENSKMAG00000005944	cth1	75	49.057	ENSLOCG00000002047	cth1	98	49.057	Lepisosteus_oculatus
ENSKMAG00000005944	cth1	99	49.734	ENSMAMG00000001525	cth1	60	64.126	Mastacembelus_armatus
ENSKMAG00000005944	cth1	100	60.265	ENSMZEG00005022335	cth1	100	60.265	Maylandia_zebra
ENSKMAG00000005944	cth1	94	63.036	ENSMMOG00000020518	cth1	100	64.356	Mola_mola
ENSKMAG00000005944	cth1	100	52.520	ENSMALG00000020738	cth1	58	63.964	Monopterus_albus
ENSKMAG00000005944	cth1	100	54.000	ENSNBRG00000022789	cth1	99	54.000	Neolamprologus_brichardi
ENSKMAG00000005944	cth1	99	60.526	ENSONIG00000021318	cth1	99	60.197	Oreochromis_niloticus
ENSKMAG00000005944	cth1	100	59.736	ENSORLG00000022847	cth1	100	61.716	Oryzias_latipes
ENSKMAG00000005944	cth1	100	59.736	ENSORLG00020011979	cth1	100	60.714	Oryzias_latipes_hni
ENSKMAG00000005944	cth1	100	59.406	ENSORLG00015013084	cth1	100	61.716	Oryzias_latipes_hsok
ENSKMAG00000005944	cth1	100	57.096	ENSOMEG00000005809	cth1	85	58.416	Oryzias_melastigma
ENSKMAG00000005944	cth1	95	50.774	ENSPKIG00000015883	cth1	64	57.848	Paramormyrops_kingsleyae
ENSKMAG00000005944	cth1	99	61.261	ENSPMGG00000004275	cth1	100	63.777	Periophthalmus_magnuspinnatus
ENSKMAG00000005944	cth1	100	62.701	ENSPFOG00000013583	cth1	94	61.736	Poecilia_formosa
ENSKMAG00000005944	cth1	100	62.701	ENSPLAG00000018158	cth1	94	61.736	Poecilia_latipinna
ENSKMAG00000005944	cth1	100	62.701	ENSPMEG00000005744	cth1	100	62.701	Poecilia_mexicana
ENSKMAG00000005944	cth1	99	62.581	ENSPREG00000004099	cth1	100	61.613	Poecilia_reticulata
ENSKMAG00000005944	cth1	87	61.686	ENSPNYG00000016705	cth1	84	60.000	Pundamilia_nyererei
ENSKMAG00000005944	cth1	96	55.696	ENSPNAG00000013147	cth1	90	53.356	Pygocentrus_nattereri
ENSKMAG00000005944	cth1	84	57.934	ENSSFOG00015017190	cth1	58	66.667	Scleropages_formosus
ENSKMAG00000005944	cth1	100	65.231	ENSSMAG00000007977	cth1	100	65.231	Scophthalmus_maximus
ENSKMAG00000005944	cth1	100	67.378	ENSSDUG00000004321	cth1	100	66.768	Seriola_dumerili
ENSKMAG00000005944	cth1	100	65.957	ENSSLDG00000012760	cth1	100	66.565	Seriola_lalandi_dorsalis
ENSKMAG00000005944	cth1	99	65.549	ENSSLDG00000010023	-	100	66.159	Seriola_lalandi_dorsalis
ENSKMAG00000005944	cth1	100	65.350	ENSSLDG00000004516	-	100	65.957	Seriola_lalandi_dorsalis
ENSKMAG00000005944	cth1	100	68.254	ENSSPAG00000018659	cth1	100	68.254	Stegastes_partitus
ENSKMAG00000005944	cth1	100	58.125	ENSTRUG00000012770	cth1	100	60.312	Takifugu_rubripes
ENSKMAG00000005944	cth1	100	58.462	ENSTNIG00000000740	cth1	100	57.846	Tetraodon_nigroviridis
ENSKMAG00000005944	cth1	81	57.787	ENSXCOG00000003710	cth1	82	54.701	Xiphophorus_couchianus
ENSKMAG00000005944	cth1	100	61.270	ENSXMAG00000023885	cth1	100	60.317	Xiphophorus_maculatus