EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000006001 (Gene tree)
Gene ID: 108236036
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 14151 bases
Position: chrLWHD01000037.1:2056531-2070681
Accession: 108236036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000009061	Npa1	PF11707.8	2.9e-82	1	1
ENSKMAP00000008930	Npa1	PF11707.8	3.3e-82	1	1
ENSKMAP00000008742	Npa1	PF11707.8	2.4e-81	1	1
ENSKMAP00000008848	Npa1	PF11707.8	6e-81	1	1
ENSKMAP00000009010	Npa1	PF11707.8	4.1e-80	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000008876	-	6414	-	ENSKMAP00000008742	2137 (aa)	-	-
ENSKMAT00000008982	-	6309	-	ENSKMAP00000008848	2102 (aa)	-	-
ENSKMAT00000009064	-	6078	XM_017416455	ENSKMAP00000008930	2025 (aa)	XP_017271944	-
ENSKMAT00000009195	-	5583	-	ENSKMAP00000009061	1860 (aa)	-	-
ENSKMAT00000009144	-	6129	-	ENSKMAP00000009010	2042 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000006001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000006001's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000006001	urb1	99	47.443	ENSG00000142207	URB1	99	45.195	Homo_sapiens
ENSKMAG00000006001	urb1	99	74.033	ENSAPOG00000020308	urb1	96	74.033	Acanthochromis_polyacanthus
ENSKMAG00000006001	urb1	99	47.649	ENSAMEG00000011998	URB1	99	41.557	Ailuropoda_melanoleuca
ENSKMAG00000006001	urb1	97	72.186	ENSACIG00000003248	urb1	93	72.186	Amphilophus_citrinellus
ENSKMAG00000006001	urb1	99	73.987	ENSAOCG00000010364	urb1	95	73.987	Amphiprion_ocellaris
ENSKMAG00000006001	urb1	99	73.990	ENSAPEG00000010758	urb1	99	72.101	Amphiprion_percula
ENSKMAG00000006001	urb1	97	75.965	ENSATEG00000011790	urb1	90	76.056	Anabas_testudineus
ENSKMAG00000006001	urb1	96	50.874	ENSAPLG00000012791	URB1	97	48.336	Anas_platyrhynchos
ENSKMAG00000006001	urb1	99	47.796	ENSACAG00000002817	URB1	97	46.448	Anolis_carolinensis
ENSKMAG00000006001	urb1	98	47.244	ENSANAG00000024617	URB1	97	47.031	Aotus_nancymaae
ENSKMAG00000006001	urb1	98	75.699	ENSACLG00000024865	urb1	93	72.912	Astatotilapia_calliptera
ENSKMAG00000006001	urb1	98	50.899	ENSAMXG00000012306	urb1	99	45.623	Astyanax_mexicanus
ENSKMAG00000006001	urb1	97	46.931	ENSBTAG00000012412	URB1	98	40.828	Bos_taurus
ENSKMAG00000006001	urb1	98	46.850	ENSCJAG00000009118	URB1	96	46.641	Callithrix_jacchus
ENSKMAG00000006001	urb1	99	47.179	ENSCAFG00000008892	URB1	99	40.788	Canis_familiaris
ENSKMAG00000006001	urb1	98	47.189	ENSCAFG00020025987	-	95	46.142	Canis_lupus_dingo
ENSKMAG00000006001	urb1	99	47.484	ENSCAFG00020025994	-	99	40.770	Canis_lupus_dingo
ENSKMAG00000006001	urb1	97	47.118	ENSCHIG00000015645	URB1	98	41.807	Capra_hircus
ENSKMAG00000006001	urb1	99	46.963	ENSTSYG00000013286	URB1	94	47.123	Carlito_syrichta
ENSKMAG00000006001	urb1	97	46.347	ENSCAPG00000015589	URB1	99	45.020	Cavia_aperea
ENSKMAG00000006001	urb1	96	54.399	ENSCPOG00000006748	URB1	98	45.944	Cavia_porcellus
ENSKMAG00000006001	urb1	99	47.518	ENSCCAG00000021299	URB1	99	45.829	Cebus_capucinus
ENSKMAG00000006001	urb1	99	47.686	ENSCATG00000042630	URB1	94	47.471	Cercocebus_atys
ENSKMAG00000006001	urb1	99	48.471	ENSCLAG00000005262	URB1	99	46.200	Chinchilla_lanigera
ENSKMAG00000006001	urb1	99	46.610	ENSCSAG00000009584	URB1	97	46.481	Chlorocebus_sabaeus
ENSKMAG00000006001	urb1	99	50.306	ENSCPBG00000006454	URB1	93	50.422	Chrysemys_picta_bellii
ENSKMAG00000006001	urb1	99	47.720	ENSCANG00000031088	URB1	94	47.660	Colobus_angolensis_palliatus
ENSKMAG00000006001	urb1	98	46.944	ENSCGRG00001010616	Urb1	99	41.055	Cricetulus_griseus_chok1gshd
ENSKMAG00000006001	urb1	97	47.255	ENSCGRG00000015840	Urb1	93	47.335	Cricetulus_griseus_crigri
ENSKMAG00000006001	urb1	99	66.563	ENSCSEG00000012616	urb1	97	64.363	Cynoglossus_semilaevis
ENSKMAG00000006001	urb1	97	76.056	ENSCVAG00000009076	urb1	98	74.893	Cyprinodon_variegatus
ENSKMAG00000006001	urb1	99	54.020	ENSDARG00000060308	urb1	97	52.590	Danio_rerio
ENSKMAG00000006001	urb1	95	45.408	ENSDNOG00000015586	URB1	99	45.459	Dasypus_novemcinctus
ENSKMAG00000006001	urb1	99	47.331	ENSDORG00000006735	Urb1	95	47.953	Dipodomys_ordii
ENSKMAG00000006001	urb1	93	55.324	ENSETEG00000009080	URB1	82	55.324	Echinops_telfairi
ENSKMAG00000006001	urb1	92	55.247	ENSEASG00005007711	URB1	99	45.516	Equus_asinus_asinus
ENSKMAG00000006001	urb1	95	54.051	ENSECAG00000013206	URB1	97	54.788	Equus_caballus
ENSKMAG00000006001	urb1	99	59.667	ENSELUG00000020516	urb1	95	59.905	Esox_lucius
ENSKMAG00000006001	urb1	99	47.792	ENSFCAG00000002177	URB1	99	40.953	Felis_catus
ENSKMAG00000006001	urb1	98	46.910	ENSFALG00000004636	URB1	94	45.997	Ficedula_albicollis
ENSKMAG00000006001	urb1	98	54.252	ENSFDAG00000007288	URB1	85	54.292	Fukomys_damarensis
ENSKMAG00000006001	urb1	98	73.217	ENSFHEG00000000202	urb1	99	66.650	Fundulus_heteroclitus
ENSKMAG00000006001	urb1	91	57.618	ENSGMOG00000001838	urb1	94	55.428	Gadus_morhua
ENSKMAG00000006001	urb1	98	48.420	ENSGALG00000015887	URB1	94	48.420	Gallus_gallus
ENSKMAG00000006001	urb1	99	73.355	ENSGAFG00000020694	urb1	99	71.099	Gambusia_affinis
ENSKMAG00000006001	urb1	97	74.826	ENSGACG00000011703	urb1	92	74.913	Gasterosteus_aculeatus
ENSKMAG00000006001	urb1	99	50.423	ENSGAGG00000022544	URB1	93	50.423	Gopherus_agassizii
ENSKMAG00000006001	urb1	99	47.717	ENSGGOG00000000285	URB1	99	45.275	Gorilla_gorilla
ENSKMAG00000006001	urb1	99	72.678	ENSHBUG00000001904	urb1	99	66.799	Haplochromis_burtoni
ENSKMAG00000006001	urb1	98	46.610	ENSHGLG00000004907	URB1	96	44.738	Heterocephalus_glaber_female
ENSKMAG00000006001	urb1	98	47.717	ENSHGLG00100010749	URB1	96	45.201	Heterocephalus_glaber_male
ENSKMAG00000006001	urb1	84	64.103	ENSHCOG00000018683	urb1	98	66.405	Hippocampus_comes
ENSKMAG00000006001	urb1	99	48.322	ENSIPUG00000014721	urb1	99	44.788	Ictalurus_punctatus
ENSKMAG00000006001	urb1	97	47.331	ENSSTOG00000004539	URB1	98	42.462	Ictidomys_tridecemlineatus
ENSKMAG00000006001	urb1	97	64.616	ENSLBEG00000027208	urb1	99	64.616	Labrus_bergylta
ENSKMAG00000006001	urb1	99	45.930	ENSLACG00000017059	URB1	97	46.031	Latimeria_chalumnae
ENSKMAG00000006001	urb1	99	55.988	ENSLOCG00000009190	urb1	94	55.988	Lepisosteus_oculatus
ENSKMAG00000006001	urb1	99	47.286	ENSLAFG00000010407	URB1	99	45.511	Loxodonta_africana
ENSKMAG00000006001	urb1	99	47.373	ENSMFAG00000034391	URB1	90	47.393	Macaca_fascicularis
ENSKMAG00000006001	urb1	99	47.294	ENSMMUG00000010295	URB1	95	47.237	Macaca_mulatta
ENSKMAG00000006001	urb1	99	46.311	ENSMNEG00000032981	URB1	94	46.262	Macaca_nemestrina
ENSKMAG00000006001	urb1	99	47.567	ENSMLEG00000041435	URB1	97	47.508	Mandrillus_leucophaeus
ENSKMAG00000006001	urb1	99	69.428	ENSMAMG00000011238	urb1	97	69.428	Mastacembelus_armatus
ENSKMAG00000006001	urb1	99	70.690	ENSMZEG00005011862	urb1	90	74.435	Maylandia_zebra
ENSKMAG00000006001	urb1	97	47.901	ENSMGAG00000014512	URB1	95	47.901	Meleagris_gallopavo
ENSKMAG00000006001	urb1	91	52.553	ENSMAUG00000010516	Urb1	99	49.120	Mesocricetus_auratus
ENSKMAG00000006001	urb1	98	53.135	ENSMICG00000016424	URB1	99	40.949	Microcebus_murinus
ENSKMAG00000006001	urb1	99	47.040	ENSMOCG00000012613	Urb1	99	41.344	Microtus_ochrogaster
ENSKMAG00000006001	urb1	99	46.807	ENSMODG00000021076	URB1	94	46.807	Monodelphis_domestica
ENSKMAG00000006001	urb1	99	72.586	ENSMALG00000017411	urb1	93	72.586	Monopterus_albus
ENSKMAG00000006001	urb1	99	47.027	MGP_CAROLIEiJ_G0020948	Urb1	99	45.541	Mus_caroli
ENSKMAG00000006001	urb1	98	46.564	ENSMUSG00000039929	Urb1	98	45.064	Mus_musculus
ENSKMAG00000006001	urb1	99	46.832	MGP_PahariEiJ_G0016653	Urb1	99	45.120	Mus_pahari
ENSKMAG00000006001	urb1	98	46.795	MGP_SPRETEiJ_G0021854	Urb1	98	45.176	Mus_spretus
ENSKMAG00000006001	urb1	97	47.874	ENSMPUG00000001123	URB1	98	41.589	Mustela_putorius_furo
ENSKMAG00000006001	urb1	98	47.510	ENSNGAG00000001905	Urb1	99	45.593	Nannospalax_galili
ENSKMAG00000006001	urb1	79	72.618	ENSNBRG00000001049	urb1	99	67.535	Neolamprologus_brichardi
ENSKMAG00000006001	urb1	96	52.897	ENSNLEG00000026872	URB1	89	52.654	Nomascus_leucogenys
ENSKMAG00000006001	urb1	90	55.882	ENSMEUG00000010828	URB1	89	50.562	Notamacropus_eugenii
ENSKMAG00000006001	urb1	98	45.483	ENSOPRG00000013482	URB1	98	40.009	Ochotona_princeps
ENSKMAG00000006001	urb1	98	47.679	ENSODEG00000002587	URB1	99	41.210	Octodon_degus
ENSKMAG00000006001	urb1	99	72.699	ENSONIG00000005599	urb1	99	66.946	Oreochromis_niloticus
ENSKMAG00000006001	urb1	99	47.360	ENSOCUG00000009381	URB1	99	46.132	Oryctolagus_cuniculus
ENSKMAG00000006001	urb1	99	74.920	ENSORLG00000003429	urb1	91	75.240	Oryzias_latipes
ENSKMAG00000006001	urb1	99	69.680	ENSORLG00020013785	urb1	94	69.914	Oryzias_latipes_hni
ENSKMAG00000006001	urb1	96	72.577	ENSORLG00015019421	urb1	93	72.577	Oryzias_latipes_hsok
ENSKMAG00000006001	urb1	87	71.710	ENSOMEG00000002094	urb1	96	75.556	Oryzias_melastigma
ENSKMAG00000006001	urb1	99	46.822	ENSOGAG00000017140	URB1	99	41.113	Otolemur_garnettii
ENSKMAG00000006001	urb1	93	47.540	ENSOARG00000013679	URB1	97	46.538	Ovis_aries
ENSKMAG00000006001	urb1	99	47.443	ENSPPAG00000003423	URB1	99	45.305	Pan_paniscus
ENSKMAG00000006001	urb1	98	48.133	ENSPPRG00000023131	URB1	92	48.133	Panthera_pardus
ENSKMAG00000006001	urb1	98	44.288	ENSPTIG00000016125	URB1	93	44.288	Panthera_tigris_altaica
ENSKMAG00000006001	urb1	99	47.286	ENSPTRG00000013852	URB1	99	45.195	Pan_troglodytes
ENSKMAG00000006001	urb1	99	47.488	ENSPANG00000021964	URB1	94	47.430	Papio_anubis
ENSKMAG00000006001	urb1	99	53.798	ENSPKIG00000003683	urb1	99	48.085	Paramormyrops_kingsleyae
ENSKMAG00000006001	urb1	99	47.091	ENSPEMG00000021205	Urb1	92	47.168	Peromyscus_maniculatus_bairdii
ENSKMAG00000006001	urb1	89	30.287	ENSPMAG00000009733	URB1	99	32.401	Petromyzon_marinus
ENSKMAG00000006001	urb1	99	46.437	ENSPCIG00000016350	URB1	99	41.046	Phascolarctos_cinereus
ENSKMAG00000006001	urb1	96	73.675	ENSPLAG00000004371	urb1	93	73.841	Poecilia_latipinna
ENSKMAG00000006001	urb1	99	73.709	ENSPMEG00000006634	urb1	99	67.806	Poecilia_mexicana
ENSKMAG00000006001	urb1	98	74.476	ENSPREG00000013453	urb1	93	73.635	Poecilia_reticulata
ENSKMAG00000006001	urb1	99	47.109	ENSPPYG00000011359	URB1	99	40.773	Pongo_abelii
ENSKMAG00000006001	urb1	96	50.496	ENSPCAG00000007430	URB1	96	43.344	Procavia_capensis
ENSKMAG00000006001	urb1	99	46.926	ENSPCOG00000022695	URB1	94	47.205	Propithecus_coquereli
ENSKMAG00000006001	urb1	98	53.391	ENSPVAG00000000889	URB1	95	45.542	Pteropus_vampyrus
ENSKMAG00000006001	urb1	99	70.875	ENSPNYG00000010589	urb1	97	70.875	Pundamilia_nyererei
ENSKMAG00000006001	urb1	97	56.119	ENSPNAG00000019324	urb1	91	56.316	Pygocentrus_nattereri
ENSKMAG00000006001	urb1	98	46.467	ENSRNOG00000002080	Urb1	98	44.619	Rattus_norvegicus
ENSKMAG00000006001	urb1	99	47.216	ENSRBIG00000033122	URB1	97	47.160	Rhinopithecus_bieti
ENSKMAG00000006001	urb1	99	47.174	ENSRROG00000040237	URB1	97	47.118	Rhinopithecus_roxellana
ENSKMAG00000006001	urb1	98	47.645	ENSSBOG00000027672	URB1	96	47.430	Saimiri_boliviensis_boliviensis
ENSKMAG00000006001	urb1	99	45.967	ENSSHAG00000005140	URB1	95	45.967	Sarcophilus_harrisii
ENSKMAG00000006001	urb1	100	52.327	ENSSFOG00015000339	urb1	99	51.184	Scleropages_formosus
ENSKMAG00000006001	urb1	97	76.399	ENSSMAG00000003782	urb1	91	76.491	Scophthalmus_maximus
ENSKMAG00000006001	urb1	99	74.805	ENSSDUG00000012313	urb1	92	77.719	Seriola_dumerili
ENSKMAG00000006001	urb1	99	74.181	ENSSLDG00000023179	urb1	92	77.544	Seriola_lalandi_dorsalis
ENSKMAG00000006001	urb1	99	49.200	ENSSPUG00000012447	URB1	96	48.240	Sphenodon_punctatus
ENSKMAG00000006001	urb1	99	74.393	ENSSPAG00000006325	urb1	93	74.393	Stegastes_partitus
ENSKMAG00000006001	urb1	98	46.443	ENSSSCG00000032024	URB1	98	41.268	Sus_scrofa
ENSKMAG00000006001	urb1	83	49.364	ENSTGUG00000013442	URB1	100	46.473	Taeniopygia_guttata
ENSKMAG00000006001	urb1	98	70.403	ENSTRUG00000009372	urb1	94	66.589	Takifugu_rubripes
ENSKMAG00000006001	urb1	96	67.073	ENSTNIG00000016277	urb1	93	67.133	Tetraodon_nigroviridis
ENSKMAG00000006001	urb1	67	49.706	ENSTBEG00000010044	URB1	63	49.706	Tupaia_belangeri
ENSKMAG00000006001	urb1	87	51.823	ENSTTRG00000007712	URB1	91	48.133	Tursiops_truncatus
ENSKMAG00000006001	urb1	98	47.335	ENSUAMG00000012231	URB1	99	41.143	Ursus_americanus
ENSKMAG00000006001	urb1	92	54.751	ENSUMAG00000017419	URB1	96	42.408	Ursus_maritimus
ENSKMAG00000006001	urb1	64	61.379	ENSVPAG00000001164	URB1	61	61.379	Vicugna_pacos
ENSKMAG00000006001	urb1	95	55.416	ENSVVUG00000000551	URB1	87	55.416	Vulpes_vulpes
ENSKMAG00000006001	urb1	98	47.348	ENSXETG00000009895	urb1	99	41.753	Xenopus_tropicalis
ENSKMAG00000006001	urb1	99	74.759	ENSXCOG00000005500	urb1	93	75.000	Xiphophorus_couchianus
ENSKMAG00000006001	urb1	99	75.120	ENSXMAG00000007253	urb1	93	75.361	Xiphophorus_maculatus