EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000006232 (Gene tree)
Gene ID: 108245156
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 12787 bases
Position: chrLWHD01000163.1:374334-387120
Accession: 108245156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000008280	TruB_N	PF01509.18	6.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000008407	-	1417	XM_017431829	ENSKMAP00000008280	278 (aa)	XP_017287318	UPI000D52F2B9

Gene Model

Click here to download ENSKMAG00000006232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000006232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000006232	trub1	76	30.374	ENSKMAG00000007861	trub2	64	30.374

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000006232	trub1	94	64.419	ENSG00000165832	TRUB1	75	64.419	Homo_sapiens
ENSKMAG00000006232	trub1	94	85.878	ENSAPOG00000020565	trub1	99	84.191	Acanthochromis_polyacanthus
ENSKMAG00000006232	trub1	92	65.251	ENSAMEG00000014931	TRUB1	72	65.251	Ailuropoda_melanoleuca
ENSKMAG00000006232	trub1	96	81.579	ENSACIG00000003060	trub1	89	81.579	Amphilophus_citrinellus
ENSKMAG00000006232	trub1	94	86.260	ENSAOCG00000017188	trub1	99	84.559	Amphiprion_ocellaris
ENSKMAG00000006232	trub1	94	87.023	ENSAPEG00000015209	trub1	99	85.294	Amphiprion_percula
ENSKMAG00000006232	trub1	88	83.673	ENSATEG00000023291	trub1	88	83.673	Anabas_testudineus
ENSKMAG00000006232	trub1	88	69.262	ENSAPLG00000006808	TRUB1	87	69.262	Anas_platyrhynchos
ENSKMAG00000006232	trub1	88	65.714	ENSACAG00000009282	TRUB1	88	65.714	Anolis_carolinensis
ENSKMAG00000006232	trub1	92	65.759	ENSANAG00000022870	TRUB1	72	65.759	Aotus_nancymaae
ENSKMAG00000006232	trub1	98	84.559	ENSACLG00000000823	trub1	98	84.559	Astatotilapia_calliptera
ENSKMAG00000006232	trub1	90	73.896	ENSAMXG00000015845	trub1	83	73.896	Astyanax_mexicanus
ENSKMAG00000006232	trub1	92	66.926	ENSBTAG00000012955	TRUB1	72	66.926	Bos_taurus
ENSKMAG00000006232	trub1	92	65.759	ENSCJAG00000047815	TRUB1	72	65.759	Callithrix_jacchus
ENSKMAG00000006232	trub1	92	66.148	ENSCAFG00000011688	TRUB1	72	66.148	Canis_familiaris
ENSKMAG00000006232	trub1	92	66.148	ENSCAFG00020013237	TRUB1	72	66.148	Canis_lupus_dingo
ENSKMAG00000006232	trub1	92	66.148	ENSCHIG00000020884	TRUB1	76	66.148	Capra_hircus
ENSKMAG00000006232	trub1	92	64.981	ENSTSYG00000000446	TRUB1	72	64.981	Carlito_syrichta
ENSKMAG00000006232	trub1	80	59.193	ENSCAPG00000017088	TRUB1	85	59.193	Cavia_aperea
ENSKMAG00000006232	trub1	70	63.590	ENSCPOG00000030129	-	75	63.590	Cavia_porcellus
ENSKMAG00000006232	trub1	69	64.583	ENSCPOG00000040236	-	77	64.583	Cavia_porcellus
ENSKMAG00000006232	trub1	92	65.759	ENSCCAG00000028842	TRUB1	72	65.759	Cebus_capucinus
ENSKMAG00000006232	trub1	92	65.759	ENSCATG00000033431	TRUB1	72	65.759	Cercocebus_atys
ENSKMAG00000006232	trub1	66	65.027	ENSCLAG00000008664	TRUB1	75	65.027	Chinchilla_lanigera
ENSKMAG00000006232	trub1	92	65.759	ENSCSAG00000004891	TRUB1	72	65.759	Chlorocebus_sabaeus
ENSKMAG00000006232	trub1	87	60.494	ENSCHOG00000011931	TRUB1	70	60.494	Choloepus_hoffmanni
ENSKMAG00000006232	trub1	92	69.261	ENSCPBG00000003051	TRUB1	86	69.261	Chrysemys_picta_bellii
ENSKMAG00000006232	trub1	92	65.759	ENSCANG00000029445	TRUB1	72	65.759	Colobus_angolensis_palliatus
ENSKMAG00000006232	trub1	90	57.200	ENSCGRG00001010322	-	72	54.412	Cricetulus_griseus_chok1gshd
ENSKMAG00000006232	trub1	81	65.625	ENSCGRG00001016772	-	81	62.097	Cricetulus_griseus_chok1gshd
ENSKMAG00000006232	trub1	90	65.200	ENSCGRG00000010806	Trub1	77	64.591	Cricetulus_griseus_crigri
ENSKMAG00000006232	trub1	95	74.144	ENSCSEG00000011261	trub1	85	74.144	Cynoglossus_semilaevis
ENSKMAG00000006232	trub1	94	81.538	ENSCVAG00000008791	trub1	80	81.538	Cyprinodon_variegatus
ENSKMAG00000006232	trub1	92	71.595	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSKMAG00000006232	trub1	92	64.202	ENSDNOG00000001069	TRUB1	72	64.202	Dasypus_novemcinctus
ENSKMAG00000006232	trub1	90	65.200	ENSDORG00000010431	Trub1	73	64.591	Dipodomys_ordii
ENSKMAG00000006232	trub1	65	65.116	ENSETEG00000009183	TRUB1	59	65.116	Echinops_telfairi
ENSKMAG00000006232	trub1	92	65.759	ENSEASG00005014739	TRUB1	72	65.759	Equus_asinus_asinus
ENSKMAG00000006232	trub1	92	65.759	ENSECAG00000007177	TRUB1	72	65.759	Equus_caballus
ENSKMAG00000006232	trub1	88	59.350	ENSEEUG00000013993	TRUB1	69	59.350	Erinaceus_europaeus
ENSKMAG00000006232	trub1	91	77.647	ENSELUG00000000502	trub1	89	77.647	Esox_lucius
ENSKMAG00000006232	trub1	92	66.148	ENSFCAG00000031927	TRUB1	72	66.148	Felis_catus
ENSKMAG00000006232	trub1	78	68.981	ENSFALG00000002232	TRUB1	83	68.981	Ficedula_albicollis
ENSKMAG00000006232	trub1	66	66.667	ENSFDAG00000008140	TRUB1	75	66.667	Fukomys_damarensis
ENSKMAG00000006232	trub1	99	83.333	ENSFHEG00000004016	trub1	95	83.333	Fundulus_heteroclitus
ENSKMAG00000006232	trub1	89	67.206	ENSGALG00000009091	TRUB1	87	67.206	Gallus_gallus
ENSKMAG00000006232	trub1	92	81.250	ENSGAFG00000009193	trub1	89	80.078	Gambusia_affinis
ENSKMAG00000006232	trub1	76	81.991	ENSGACG00000015387	trub1	100	81.991	Gasterosteus_aculeatus
ENSKMAG00000006232	trub1	92	68.482	ENSGAGG00000009758	TRUB1	70	70.204	Gopherus_agassizii
ENSKMAG00000006232	trub1	94	64.419	ENSGGOG00000004583	TRUB1	75	64.419	Gorilla_gorilla
ENSKMAG00000006232	trub1	98	84.926	ENSHBUG00000016787	trub1	98	84.926	Haplochromis_burtoni
ENSKMAG00000006232	trub1	92	64.981	ENSHGLG00000015314	TRUB1	72	64.981	Heterocephalus_glaber_female
ENSKMAG00000006232	trub1	66	66.120	ENSHGLG00100009183	TRUB1	77	66.120	Heterocephalus_glaber_male
ENSKMAG00000006232	trub1	96	80.451	ENSHCOG00000017877	trub1	96	80.451	Hippocampus_comes
ENSKMAG00000006232	trub1	92	73.333	ENSIPUG00000017559	trub1	90	73.333	Ictalurus_punctatus
ENSKMAG00000006232	trub1	92	65.370	ENSSTOG00000003641	TRUB1	76	65.370	Ictidomys_tridecemlineatus
ENSKMAG00000006232	trub1	92	64.981	ENSJJAG00000011800	Trub1	74	64.981	Jaculus_jaculus
ENSKMAG00000006232	trub1	95	84.151	ENSLBEG00000026722	trub1	97	81.588	Labrus_bergylta
ENSKMAG00000006232	trub1	93	70.656	ENSLACG00000014885	TRUB1	86	70.656	Latimeria_chalumnae
ENSKMAG00000006232	trub1	99	69.314	ENSLOCG00000012979	trub1	94	69.314	Lepisosteus_oculatus
ENSKMAG00000006232	trub1	88	67.480	ENSLAFG00000015452	TRUB1	70	67.480	Loxodonta_africana
ENSKMAG00000006232	trub1	92	65.759	ENSMFAG00000031767	TRUB1	72	65.759	Macaca_fascicularis
ENSKMAG00000006232	trub1	92	65.759	ENSMMUG00000001902	TRUB1	72	65.759	Macaca_mulatta
ENSKMAG00000006232	trub1	92	61.089	ENSMNEG00000044646	TRUB1	71	61.089	Macaca_nemestrina
ENSKMAG00000006232	trub1	92	65.759	ENSMLEG00000042655	TRUB1	72	65.759	Mandrillus_leucophaeus
ENSKMAG00000006232	trub1	98	84.191	ENSMZEG00005024095	trub1	98	84.191	Maylandia_zebra
ENSKMAG00000006232	trub1	89	68.016	ENSMGAG00000011135	TRUB1	85	68.016	Meleagris_gallopavo
ENSKMAG00000006232	trub1	86	64.435	ENSMAUG00000011101	Trub1	72	63.821	Mesocricetus_auratus
ENSKMAG00000006232	trub1	92	65.370	ENSMICG00000016324	TRUB1	72	65.370	Microcebus_murinus
ENSKMAG00000006232	trub1	86	66.807	ENSMOCG00000017759	Trub1	76	64.093	Microtus_ochrogaster
ENSKMAG00000006232	trub1	88	68.443	ENSMODG00000009676	TRUB1	71	65.759	Monodelphis_domestica
ENSKMAG00000006232	trub1	91	64.427	MGP_CAROLIEiJ_G0023100	Trub1	76	65.241	Mus_caroli
ENSKMAG00000006232	trub1	91	63.636	ENSMUSG00000025086	Trub1	76	64.171	Mus_musculus
ENSKMAG00000006232	trub1	92	63.813	MGP_PahariEiJ_G0014588	Trub1	75	63.813	Mus_pahari
ENSKMAG00000006232	trub1	91	63.636	MGP_SPRETEiJ_G0024021	Trub1	76	64.171	Mus_spretus
ENSKMAG00000006232	trub1	92	66.148	ENSMPUG00000003556	TRUB1	72	66.148	Mustela_putorius_furo
ENSKMAG00000006232	trub1	92	65.759	ENSMLUG00000017686	TRUB1	74	65.759	Myotis_lucifugus
ENSKMAG00000006232	trub1	92	65.370	ENSNGAG00000018682	Trub1	73	65.370	Nannospalax_galili
ENSKMAG00000006232	trub1	91	86.220	ENSNBRG00000023393	trub1	91	86.220	Neolamprologus_brichardi
ENSKMAG00000006232	trub1	94	64.419	ENSNLEG00000016345	TRUB1	75	64.419	Nomascus_leucogenys
ENSKMAG00000006232	trub1	72	70.149	ENSMEUG00000006603	TRUB1	84	64.474	Notamacropus_eugenii
ENSKMAG00000006232	trub1	92	64.981	ENSOPRG00000009371	TRUB1	74	64.981	Ochotona_princeps
ENSKMAG00000006232	trub1	88	65.447	ENSODEG00000010854	TRUB1	70	65.447	Octodon_degus
ENSKMAG00000006232	trub1	96	85.714	ENSONIG00000007249	trub1	97	85.714	Oreochromis_niloticus
ENSKMAG00000006232	trub1	89	67.611	ENSOANG00000001556	TRUB1	85	65.504	Ornithorhynchus_anatinus
ENSKMAG00000006232	trub1	92	65.370	ENSOCUG00000009456	TRUB1	73	65.370	Oryctolagus_cuniculus
ENSKMAG00000006232	trub1	99	80.797	ENSORLG00000029719	trub1	99	80.797	Oryzias_latipes
ENSKMAG00000006232	trub1	99	80.435	ENSORLG00020016767	trub1	98	80.435	Oryzias_latipes_hni
ENSKMAG00000006232	trub1	99	80.072	ENSORLG00015014728	trub1	99	80.072	Oryzias_latipes_hsok
ENSKMAG00000006232	trub1	99	78.777	ENSOMEG00000014556	trub1	98	78.777	Oryzias_melastigma
ENSKMAG00000006232	trub1	92	65.759	ENSOGAG00000015895	TRUB1	72	65.759	Otolemur_garnettii
ENSKMAG00000006232	trub1	88	66.008	ENSOARG00000015591	TRUB1	74	64.394	Ovis_aries
ENSKMAG00000006232	trub1	94	64.419	ENSPPAG00000043645	TRUB1	75	64.419	Pan_paniscus
ENSKMAG00000006232	trub1	92	65.759	ENSPPRG00000007096	TRUB1	72	65.759	Panthera_pardus
ENSKMAG00000006232	trub1	92	65.759	ENSPTIG00000006378	TRUB1	72	65.759	Panthera_tigris_altaica
ENSKMAG00000006232	trub1	94	64.419	ENSPTRG00000002964	TRUB1	75	64.419	Pan_troglodytes
ENSKMAG00000006232	trub1	92	65.759	ENSPANG00000020712	TRUB1	72	65.759	Papio_anubis
ENSKMAG00000006232	trub1	66	73.770	ENSPKIG00000003852	trub1	75	73.770	Paramormyrops_kingsleyae
ENSKMAG00000006232	trub1	88	69.919	ENSPSIG00000012877	TRUB1	84	69.919	Pelodiscus_sinensis
ENSKMAG00000006232	trub1	96	79.699	ENSPMGG00000000075	trub1	94	79.699	Periophthalmus_magnuspinnatus
ENSKMAG00000006232	trub1	92	66.148	ENSPEMG00000011156	Trub1	74	66.148	Peromyscus_maniculatus_bairdii
ENSKMAG00000006232	trub1	88	68.443	ENSPCIG00000009729	TRUB1	68	67.068	Phascolarctos_cinereus
ENSKMAG00000006232	trub1	99	79.927	ENSPFOG00000009950	trub1	100	79.927	Poecilia_formosa
ENSKMAG00000006232	trub1	100	79.856	ENSPLAG00000013855	trub1	97	79.856	Poecilia_latipinna
ENSKMAG00000006232	trub1	100	80.216	ENSPMEG00000009064	trub1	100	80.216	Poecilia_mexicana
ENSKMAG00000006232	trub1	100	80.935	ENSPREG00000003343	trub1	100	80.935	Poecilia_reticulata
ENSKMAG00000006232	trub1	94	64.045	ENSPPYG00000002676	TRUB1	75	64.045	Pongo_abelii
ENSKMAG00000006232	trub1	88	61.382	ENSPCAG00000008427	TRUB1	70	61.382	Procavia_capensis
ENSKMAG00000006232	trub1	92	60.311	ENSPCOG00000024360	TRUB1	71	59.533	Propithecus_coquereli
ENSKMAG00000006232	trub1	73	68.812	ENSPVAG00000007575	TRUB1	77	68.812	Pteropus_vampyrus
ENSKMAG00000006232	trub1	98	84.191	ENSPNYG00000018614	trub1	98	84.191	Pundamilia_nyererei
ENSKMAG00000006232	trub1	93	62.934	ENSPNAG00000006881	trub1	84	62.162	Pygocentrus_nattereri
ENSKMAG00000006232	trub1	92	63.424	ENSRNOG00000017321	Trub1	74	63.424	Rattus_norvegicus
ENSKMAG00000006232	trub1	92	57.915	ENSRBIG00000033423	TRUB1	70	57.915	Rhinopithecus_bieti
ENSKMAG00000006232	trub1	92	65.759	ENSRROG00000033902	TRUB1	72	65.759	Rhinopithecus_roxellana
ENSKMAG00000006232	trub1	92	65.759	ENSSBOG00000024237	TRUB1	72	65.759	Saimiri_boliviensis_boliviensis
ENSKMAG00000006232	trub1	77	69.302	ENSSHAG00000009346	TRUB1	72	69.302	Sarcophilus_harrisii
ENSKMAG00000006232	trub1	94	76.538	ENSSFOG00015022124	trub1	89	76.538	Scleropages_formosus
ENSKMAG00000006232	trub1	98	83.088	ENSSMAG00000001020	trub1	97	83.088	Scophthalmus_maximus
ENSKMAG00000006232	trub1	96	85.448	ENSSDUG00000016414	trub1	96	85.448	Seriola_dumerili
ENSKMAG00000006232	trub1	96	85.448	ENSSLDG00000015486	trub1	96	85.448	Seriola_lalandi_dorsalis
ENSKMAG00000006232	trub1	94	66.160	ENSSPUG00000001642	TRUB1	90	66.160	Sphenodon_punctatus
ENSKMAG00000006232	trub1	100	83.453	ENSSPAG00000001217	trub1	100	83.453	Stegastes_partitus
ENSKMAG00000006232	trub1	92	65.370	ENSSSCG00000010653	TRUB1	74	65.370	Sus_scrofa
ENSKMAG00000006232	trub1	88	68.163	ENSTGUG00000010971	TRUB1	90	66.142	Taeniopygia_guttata
ENSKMAG00000006232	trub1	80	56.502	ENSTBEG00000002880	TRUB1	86	56.502	Tupaia_belangeri
ENSKMAG00000006232	trub1	73	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSKMAG00000006232	trub1	92	66.148	ENSUAMG00000024876	TRUB1	72	66.148	Ursus_americanus
ENSKMAG00000006232	trub1	92	66.148	ENSUMAG00000002411	TRUB1	79	65.174	Ursus_maritimus
ENSKMAG00000006232	trub1	88	67.886	ENSVPAG00000005507	TRUB1	72	66.148	Vicugna_pacos
ENSKMAG00000006232	trub1	92	66.148	ENSVVUG00000010085	TRUB1	61	66.148	Vulpes_vulpes
ENSKMAG00000006232	trub1	88	68.163	ENSXETG00000023828	trub1	88	68.163	Xenopus_tropicalis
ENSKMAG00000006232	trub1	89	83.401	ENSXCOG00000017847	trub1	87	83.401	Xiphophorus_couchianus
ENSKMAG00000006232	trub1	100	79.856	ENSXMAG00000014701	trub1	100	79.856	Xiphophorus_maculatus