EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000006462 (Gene tree)
Gene ID: 108229566
Gene Symbol: -
Alias: -
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 2050 bases
Position: chrLWHD01002621.1:1667-3716
Accession: 108229566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000008593	RRM_1	PF00076.22	6.1e-17	1	1
ENSKMAP00000008593	FYTT	PF07078.11	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000008724	-	1232	XM_017405238	ENSKMAP00000008593	239 (aa)	XP_017260727	UPI0007F89E7E

Gene Model

Click here to download ENSKMAG00000006462's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG
kmr03015	mRNA surveillance pathway	KEGG
kmr03040	Spliceosome	KEGG
kmr05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000006462's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000006462	-	100	51.449	ENSKMAG00000008912	alyref	100	53.261

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000006462	-	100	71.032	ENSAPOG00000000183	-	100	69.841	Acanthochromis_polyacanthus
ENSKMAG00000006462	-	98	60.223	ENSACIG00000020351	-	99	60.595	Amphilophus_citrinellus
ENSKMAG00000006462	-	97	51.111	ENSACIG00000006351	alyref	97	52.574	Amphilophus_citrinellus
ENSKMAG00000006462	-	100	71.315	ENSAOCG00000019305	-	100	72.112	Amphiprion_ocellaris
ENSKMAG00000006462	-	100	51.636	ENSAOCG00000014012	alyref	100	53.091	Amphiprion_ocellaris
ENSKMAG00000006462	-	100	51.636	ENSAPEG00000014603	alyref	100	53.091	Amphiprion_percula
ENSKMAG00000006462	-	100	70.916	ENSAPEG00000013527	-	100	71.713	Amphiprion_percula
ENSKMAG00000006462	-	100	73.518	ENSATEG00000000382	-	100	69.960	Anabas_testudineus
ENSKMAG00000006462	-	100	49.110	ENSATEG00000004307	alyref	100	50.890	Anabas_testudineus
ENSKMAG00000006462	-	100	64.773	ENSACLG00000010184	-	100	65.152	Astatotilapia_calliptera
ENSKMAG00000006462	-	100	49.275	ENSACLG00000008432	alyref	100	50.725	Astatotilapia_calliptera
ENSKMAG00000006462	-	100	51.228	ENSAMXG00000007359	alyref	100	51.418	Astyanax_mexicanus
ENSKMAG00000006462	-	72	50.270	ENSCING00000013568	-	99	46.718	Ciona_intestinalis
ENSKMAG00000006462	-	98	46.640	ENSCSAVG00000003324	-	99	48.207	Ciona_savignyi
ENSKMAG00000006462	-	100	52.381	ENSCSEG00000017800	alyref	100	53.480	Cynoglossus_semilaevis
ENSKMAG00000006462	-	100	51.292	ENSCVAG00000014869	alyref	100	52.768	Cyprinodon_variegatus
ENSKMAG00000006462	-	100	68.313	ENSCVAG00000007789	-	100	65.844	Cyprinodon_variegatus
ENSKMAG00000006462	-	100	52.448	ENSDARG00000077732	alyref	100	52.650	Danio_rerio
ENSKMAG00000006462	-	96	39.777	FBgn0010774	Ref1	65	43.750	Drosophila_melanogaster
ENSKMAG00000006462	-	100	45.161	ENSEBUG00000006305	alyref	100	44.841	Eptatretus_burgeri
ENSKMAG00000006462	-	97	45.703	ENSEBUG00000008253	alyref	95	46.484	Eptatretus_burgeri
ENSKMAG00000006462	-	98	50.185	ENSELUG00000017178	alyref	99	52.381	Esox_lucius
ENSKMAG00000006462	-	98	54.198	ENSELUG00000008849	-	99	54.962	Esox_lucius
ENSKMAG00000006462	-	58	61.438	ENSFALG00000011923	-	96	61.290	Ficedula_albicollis
ENSKMAG00000006462	-	100	52.222	ENSFHEG00000019426	alyref	100	54.074	Fundulus_heteroclitus
ENSKMAG00000006462	-	100	72.428	ENSFHEG00000004698	-	100	72.016	Fundulus_heteroclitus
ENSKMAG00000006462	-	100	49.438	ENSGMOG00000009882	alyref	100	49.814	Gadus_morhua
ENSKMAG00000006462	-	70	63.684	ENSGMOG00000013122	-	100	63.684	Gadus_morhua
ENSKMAG00000006462	-	100	51.648	ENSGAFG00000006014	alyref	100	52.747	Gambusia_affinis
ENSKMAG00000006462	-	100	69.167	ENSGAFG00000007573	-	100	69.167	Gambusia_affinis
ENSKMAG00000006462	-	100	64.045	ENSHBUG00000001454	-	100	64.419	Haplochromis_burtoni
ENSKMAG00000006462	-	100	49.275	ENSHBUG00000020196	alyref	100	50.725	Haplochromis_burtoni
ENSKMAG00000006462	-	98	62.205	ENSHCOG00000012825	-	95	60.000	Hippocampus_comes
ENSKMAG00000006462	-	100	50.534	ENSIPUG00000009469	alyref	100	50.719	Ictalurus_punctatus
ENSKMAG00000006462	-	77	54.211	ENSSTOG00000016570	-	99	55.789	Ictidomys_tridecemlineatus
ENSKMAG00000006462	-	97	54.839	ENSLBEG00000023118	alyref	88	55.600	Labrus_bergylta
ENSKMAG00000006462	-	99	61.776	ENSLBEG00000012930	-	100	61.961	Labrus_bergylta
ENSKMAG00000006462	-	100	60.870	ENSLBEG00000005387	-	100	62.409	Labrus_bergylta
ENSKMAG00000006462	-	81	51.835	ENSLOCG00000013879	alyref	89	52.252	Lepisosteus_oculatus
ENSKMAG00000006462	-	100	50.909	ENSMAMG00000003034	alyref	100	52.364	Mastacembelus_armatus
ENSKMAG00000006462	-	100	66.403	ENSMAMG00000005464	-	100	66.403	Mastacembelus_armatus
ENSKMAG00000006462	-	100	49.275	ENSMZEG00005008639	alyref	100	50.725	Maylandia_zebra
ENSKMAG00000006462	-	100	64.394	ENSMZEG00005012096	-	100	64.773	Maylandia_zebra
ENSKMAG00000006462	-	99	53.846	ENSMMOG00000007032	-	99	53.846	Mola_mola
ENSKMAG00000006462	-	98	50.936	ENSMMOG00000012458	alyref	96	52.768	Mola_mola
ENSKMAG00000006462	-	100	66.160	ENSMALG00000006054	-	100	63.118	Monopterus_albus
ENSKMAG00000006462	-	97	43.382	ENSMLUG00000014372	-	98	48.881	Myotis_lucifugus
ENSKMAG00000006462	-	97	44.086	ENSMLUG00000022467	-	98	44.203	Myotis_lucifugus
ENSKMAG00000006462	-	100	45.926	ENSMLUG00000006521	-	100	46.154	Myotis_lucifugus
ENSKMAG00000006462	-	97	45.660	ENSMLUG00000009247	-	98	43.774	Myotis_lucifugus
ENSKMAG00000006462	-	97	46.617	ENSMLUG00000030671	-	98	45.185	Myotis_lucifugus
ENSKMAG00000006462	-	100	46.442	ENSMLUG00000004098	-	100	49.814	Myotis_lucifugus
ENSKMAG00000006462	-	97	44.526	ENSMLUG00000028605	-	98	45.985	Myotis_lucifugus
ENSKMAG00000006462	-	97	43.796	ENSMLUG00000022178	-	98	45.113	Myotis_lucifugus
ENSKMAG00000006462	-	100	53.719	ENSNGAG00000022014	-	100	54.800	Nannospalax_galili
ENSKMAG00000006462	-	100	49.281	ENSNBRG00000001747	alyref	100	51.079	Neolamprologus_brichardi
ENSKMAG00000006462	-	100	64.773	ENSNBRG00000017460	-	100	65.152	Neolamprologus_brichardi
ENSKMAG00000006462	-	100	64.231	ENSONIG00000003296	-	100	65.000	Oreochromis_niloticus
ENSKMAG00000006462	-	98	49.275	ENSONIG00000019434	alyref	100	51.049	Oreochromis_niloticus
ENSKMAG00000006462	-	98	57.000	ENSORLG00000001620	-	88	54.667	Oryzias_latipes
ENSKMAG00000006462	-	100	50.916	ENSORLG00020011942	alyref	100	52.015	Oryzias_latipes_hni
ENSKMAG00000006462	-	99	71.315	ENSORLG00020015673	-	99	69.323	Oryzias_latipes_hni
ENSKMAG00000006462	-	99	71.937	ENSORLG00015015143	-	99	69.170	Oryzias_latipes_hsok
ENSKMAG00000006462	-	100	51.292	ENSORLG00015022664	alyref	100	52.399	Oryzias_latipes_hsok
ENSKMAG00000006462	-	100	49.645	ENSOMEG00000019176	alyref	100	52.030	Oryzias_melastigma
ENSKMAG00000006462	-	98	71.660	ENSOMEG00000007158	-	98	69.231	Oryzias_melastigma
ENSKMAG00000006462	-	69	59.551	ENSPPAG00000036403	-	68	59.777	Pan_paniscus
ENSKMAG00000006462	-	100	51.103	ENSPKIG00000007070	alyref	100	54.373	Paramormyrops_kingsleyae
ENSKMAG00000006462	-	97	52.308	ENSPKIG00000006233	-	80	55.118	Paramormyrops_kingsleyae
ENSKMAG00000006462	-	97	50.752	ENSPMGG00000016600	alyref	90	52.830	Periophthalmus_magnuspinnatus
ENSKMAG00000006462	-	69	59.172	ENSPMGG00000012994	-	93	56.287	Periophthalmus_magnuspinnatus
ENSKMAG00000006462	-	100	52.800	ENSPEMG00000016628	-	100	52.000	Peromyscus_maniculatus_bairdii
ENSKMAG00000006462	-	100	70.082	ENSPFOG00000017094	-	100	69.672	Poecilia_formosa
ENSKMAG00000006462	-	100	51.273	ENSPFOG00000022825	alyref	99	53.455	Poecilia_formosa
ENSKMAG00000006462	-	100	70.082	ENSPLAG00000014380	-	100	69.672	Poecilia_latipinna
ENSKMAG00000006462	-	100	51.460	ENSPLAG00000006948	alyref	100	53.285	Poecilia_latipinna
ENSKMAG00000006462	-	100	70.082	ENSPMEG00000023039	-	100	69.672	Poecilia_mexicana
ENSKMAG00000006462	-	100	51.273	ENSPMEG00000003547	alyref	100	53.455	Poecilia_mexicana
ENSKMAG00000006462	-	100	66.265	ENSPREG00000003649	-	100	68.273	Poecilia_reticulata
ENSKMAG00000006462	-	100	51.095	ENSPREG00000015795	alyref	100	52.920	Poecilia_reticulata
ENSKMAG00000006462	-	100	49.275	ENSPNYG00000017498	alyref	100	50.725	Pundamilia_nyererei
ENSKMAG00000006462	-	97	63.035	ENSPNYG00000002879	-	98	63.566	Pundamilia_nyererei
ENSKMAG00000006462	-	100	49.275	ENSPNAG00000002531	alyref	100	51.254	Pygocentrus_nattereri
ENSKMAG00000006462	-	92	52.361	ENSSBOG00000030924	-	87	57.292	Saimiri_boliviensis_boliviensis
ENSKMAG00000006462	-	99	45.565	ENSSHAG00000000609	-	100	45.238	Sarcophilus_harrisii
ENSKMAG00000006462	-	99	46.063	ENSSHAG00000012866	-	100	42.586	Sarcophilus_harrisii
ENSKMAG00000006462	-	81	59.804	ENSSFOG00015003923	alyref	73	59.804	Scleropages_formosus
ENSKMAG00000006462	-	70	52.632	ENSSFOG00015003678	alyref	83	55.801	Scleropages_formosus
ENSKMAG00000006462	-	98	50.185	ENSSMAG00000009283	alyref	99	52.768	Scophthalmus_maximus
ENSKMAG00000006462	-	100	68.821	ENSSMAG00000011169	-	100	68.061	Scophthalmus_maximus
ENSKMAG00000006462	-	100	52.000	ENSSDUG00000016158	alyref	100	53.091	Seriola_dumerili
ENSKMAG00000006462	-	100	51.087	ENSSLDG00000017803	alyref	100	51.449	Seriola_lalandi_dorsalis
ENSKMAG00000006462	-	97	70.400	ENSSPAG00000017028	-	95	70.000	Stegastes_partitus
ENSKMAG00000006462	-	100	59.398	ENSTRUG00000003051	-	100	57.471	Takifugu_rubripes
ENSKMAG00000006462	-	100	50.000	ENSTNIG00000011595	alyref	100	50.943	Tetraodon_nigroviridis
ENSKMAG00000006462	-	100	60.870	ENSTNIG00000014136	-	100	57.724	Tetraodon_nigroviridis
ENSKMAG00000006462	-	73	58.602	ENSVVUG00000000272	-	90	56.931	Vulpes_vulpes
ENSKMAG00000006462	-	97	51.880	ENSXCOG00000018047	alyref	98	52.045	Xiphophorus_couchianus
ENSKMAG00000006462	-	97	51.880	ENSXMAG00000012218	alyref	98	52.045	Xiphophorus_maculatus
ENSKMAG00000006462	-	100	69.959	ENSXMAG00000018086	-	100	69.547	Xiphophorus_maculatus