EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000006568 (Gene tree)
Gene ID: 108251670
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 10584 bases
Position: chrLWHD01000985.1:13436-24019
Accession: 108251670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000008743	DND1_DSRM	PF14709.7	6.9e-25	1	1
ENSKMAP00000008743	RRM_1	PF00076.22	1.7e-39	1	3
ENSKMAP00000008743	RRM_1	PF00076.22	1.7e-39	2	3
ENSKMAP00000008743	RRM_1	PF00076.22	1.7e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000008878	-	3603	XM_017442040	ENSKMAP00000008743	615 (aa)	XP_017297529	UPI0007F8A0FA

Gene Model

Click here to download ENSKMAG00000006568's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000006568's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000006568	a1cf	87	53.506	ENSKMAG00000000084	rbm47	79	52.486
ENSKMAG00000006568	a1cf	84	65.972	ENSKMAG00000015127	rbm46	87	65.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000006568	a1cf	100	77.398	ENSG00000148584	A1CF	100	88.614	Homo_sapiens
ENSKMAG00000006568	a1cf	100	84.897	ENSAPOG00000008259	a1cf	100	83.466	Acanthochromis_polyacanthus
ENSKMAG00000006568	a1cf	100	76.585	ENSAMEG00000000523	A1CF	100	76.423	Ailuropoda_melanoleuca
ENSKMAG00000006568	a1cf	100	86.408	ENSACIG00000008632	a1cf	100	88.188	Amphilophus_citrinellus
ENSKMAG00000006568	a1cf	100	86.829	ENSAOCG00000023744	a1cf	100	86.667	Amphiprion_ocellaris
ENSKMAG00000006568	a1cf	100	88.130	ENSAPEG00000009537	a1cf	100	87.967	Amphiprion_percula
ENSKMAG00000006568	a1cf	100	87.358	ENSATEG00000013720	a1cf	100	88.169	Anabas_testudineus
ENSKMAG00000006568	a1cf	100	77.236	ENSAPLG00000002964	A1CF	100	76.423	Anas_platyrhynchos
ENSKMAG00000006568	a1cf	100	76.260	ENSACAG00000015269	A1CF	100	75.610	Anolis_carolinensis
ENSKMAG00000006568	a1cf	100	76.911	ENSANAG00000019974	A1CF	100	76.098	Aotus_nancymaae
ENSKMAG00000006568	a1cf	100	82.686	ENSACLG00000017428	a1cf	100	84.466	Astatotilapia_calliptera
ENSKMAG00000006568	a1cf	100	76.623	ENSAMXG00000018180	a1cf	100	75.487	Astyanax_mexicanus
ENSKMAG00000006568	a1cf	100	77.073	ENSBTAG00000021195	A1CF	100	76.423	Bos_taurus
ENSKMAG00000006568	a1cf	100	77.886	ENSCJAG00000005045	A1CF	100	77.073	Callithrix_jacchus
ENSKMAG00000006568	a1cf	100	76.585	ENSCAFG00000015581	A1CF	100	76.260	Canis_familiaris
ENSKMAG00000006568	a1cf	100	76.585	ENSCAFG00020026421	A1CF	98	84.950	Canis_lupus_dingo
ENSKMAG00000006568	a1cf	100	78.537	ENSCHIG00000020411	A1CF	100	77.886	Capra_hircus
ENSKMAG00000006568	a1cf	94	77.625	ENSTSYG00000001755	A1CF	100	75.731	Carlito_syrichta
ENSKMAG00000006568	a1cf	100	73.761	ENSCAPG00000017386	A1CF	100	73.469	Cavia_aperea
ENSKMAG00000006568	a1cf	100	76.748	ENSCPOG00000009807	A1CF	100	75.935	Cavia_porcellus
ENSKMAG00000006568	a1cf	100	77.561	ENSCCAG00000018168	A1CF	100	76.748	Cebus_capucinus
ENSKMAG00000006568	a1cf	100	76.260	ENSCATG00000043715	A1CF	100	75.447	Cercocebus_atys
ENSKMAG00000006568	a1cf	100	77.236	ENSCLAG00000010424	A1CF	100	76.423	Chinchilla_lanigera
ENSKMAG00000006568	a1cf	100	77.236	ENSCSAG00000007032	A1CF	100	76.423	Chlorocebus_sabaeus
ENSKMAG00000006568	a1cf	98	74.300	ENSCHOG00000009089	A1CF	98	73.311	Choloepus_hoffmanni
ENSKMAG00000006568	a1cf	100	78.049	ENSCPBG00000026464	A1CF	100	76.911	Chrysemys_picta_bellii
ENSKMAG00000006568	a1cf	100	77.398	ENSCANG00000038032	A1CF	100	76.585	Colobus_angolensis_palliatus
ENSKMAG00000006568	a1cf	100	77.073	ENSCGRG00001017413	A1cf	100	76.260	Cricetulus_griseus_chok1gshd
ENSKMAG00000006568	a1cf	100	76.098	ENSCGRG00000017332	A1cf	100	75.610	Cricetulus_griseus_crigri
ENSKMAG00000006568	a1cf	100	84.416	ENSCSEG00000002361	a1cf	100	84.416	Cynoglossus_semilaevis
ENSKMAG00000006568	a1cf	100	88.655	ENSCVAG00000010520	a1cf	100	90.276	Cyprinodon_variegatus
ENSKMAG00000006568	a1cf	100	80.976	ENSDARG00000002968	a1cf	100	79.512	Danio_rerio
ENSKMAG00000006568	a1cf	100	77.561	ENSDNOG00000002829	A1CF	100	76.748	Dasypus_novemcinctus
ENSKMAG00000006568	a1cf	81	85.870	ENSETEG00000012527	A1CF	81	85.870	Echinops_telfairi
ENSKMAG00000006568	a1cf	100	78.049	ENSEASG00005012924	A1CF	100	77.236	Equus_asinus_asinus
ENSKMAG00000006568	a1cf	100	77.724	ENSECAG00000010424	A1CF	100	76.911	Equus_caballus
ENSKMAG00000006568	a1cf	78	67.573	ENSEEUG00000000013	A1CF	97	67.457	Erinaceus_europaeus
ENSKMAG00000006568	a1cf	100	81.789	ENSELUG00000003159	a1cf	100	80.650	Esox_lucius
ENSKMAG00000006568	a1cf	100	75.851	ENSFCAG00000011179	A1CF	100	75.447	Felis_catus
ENSKMAG00000006568	a1cf	100	77.561	ENSFALG00000013183	A1CF	100	76.911	Ficedula_albicollis
ENSKMAG00000006568	a1cf	100	75.772	ENSFDAG00000019371	A1CF	100	74.959	Fukomys_damarensis
ENSKMAG00000006568	a1cf	100	81.481	ENSFHEG00000019652	a1cf	96	89.062	Fundulus_heteroclitus
ENSKMAG00000006568	a1cf	100	78.211	ENSGMOG00000018943	a1cf	100	77.561	Gadus_morhua
ENSKMAG00000006568	a1cf	96	77.288	ENSGALG00000003765	A1CF	96	77.148	Gallus_gallus
ENSKMAG00000006568	a1cf	100	82.496	ENSGAFG00000014868	a1cf	100	81.848	Gambusia_affinis
ENSKMAG00000006568	a1cf	100	85.854	ENSGACG00000010241	a1cf	100	85.041	Gasterosteus_aculeatus
ENSKMAG00000006568	a1cf	96	77.157	ENSGAGG00000016508	A1CF	98	75.973	Gopherus_agassizii
ENSKMAG00000006568	a1cf	100	77.398	ENSGGOG00000009670	A1CF	100	76.585	Gorilla_gorilla
ENSKMAG00000006568	a1cf	100	86.408	ENSHBUG00000021959	a1cf	100	87.864	Haplochromis_burtoni
ENSKMAG00000006568	a1cf	100	76.748	ENSHGLG00000008955	A1CF	100	77.236	Heterocephalus_glaber_female
ENSKMAG00000006568	a1cf	100	76.098	ENSHGLG00100000518	A1CF	100	76.585	Heterocephalus_glaber_male
ENSKMAG00000006568	a1cf	100	74.404	ENSHCOG00000017669	a1cf	100	75.840	Hippocampus_comes
ENSKMAG00000006568	a1cf	88	85.793	ENSIPUG00000010367	a1cf	95	84.686	Ictalurus_punctatus
ENSKMAG00000006568	a1cf	99	88.331	ENSLBEG00000020994	a1cf	99	88.817	Labrus_bergylta
ENSKMAG00000006568	a1cf	100	77.886	ENSLACG00000008061	A1CF	100	77.073	Latimeria_chalumnae
ENSKMAG00000006568	a1cf	100	81.463	ENSLOCG00000006302	a1cf	100	80.488	Lepisosteus_oculatus
ENSKMAG00000006568	a1cf	100	77.561	ENSLAFG00000015462	A1CF	100	77.398	Loxodonta_africana
ENSKMAG00000006568	a1cf	100	76.260	ENSMFAG00000035948	A1CF	100	75.447	Macaca_fascicularis
ENSKMAG00000006568	a1cf	100	76.260	ENSMMUG00000007077	A1CF	100	75.447	Macaca_mulatta
ENSKMAG00000006568	a1cf	100	76.423	ENSMNEG00000031454	A1CF	100	75.610	Macaca_nemestrina
ENSKMAG00000006568	a1cf	100	77.398	ENSMLEG00000037223	A1CF	100	76.585	Mandrillus_leucophaeus
ENSKMAG00000006568	a1cf	100	85.065	ENSMAMG00000010402	a1cf	100	87.013	Mastacembelus_armatus
ENSKMAG00000006568	a1cf	100	86.341	ENSMZEG00005013245	a1cf	100	84.603	Maylandia_zebra
ENSKMAG00000006568	a1cf	100	76.948	ENSMGAG00000001507	A1CF	100	76.299	Meleagris_gallopavo
ENSKMAG00000006568	a1cf	100	76.585	ENSMAUG00000007422	A1cf	100	76.098	Mesocricetus_auratus
ENSKMAG00000006568	a1cf	100	76.098	ENSMICG00000003377	A1CF	100	76.260	Microcebus_murinus
ENSKMAG00000006568	a1cf	100	77.398	ENSMOCG00000021536	A1cf	100	76.585	Microtus_ochrogaster
ENSKMAG00000006568	a1cf	100	75.610	ENSMMOG00000009422	a1cf	100	75.610	Mola_mola
ENSKMAG00000006568	a1cf	89	77.656	ENSMODG00000016478	A1CF	97	78.085	Monodelphis_domestica
ENSKMAG00000006568	a1cf	100	78.049	ENSMALG00000012992	a1cf	100	76.911	Monopterus_albus
ENSKMAG00000006568	a1cf	100	76.585	MGP_CAROLIEiJ_G0022873	A1cf	100	75.772	Mus_caroli
ENSKMAG00000006568	a1cf	100	76.585	ENSMUSG00000052595	A1cf	99	84.615	Mus_musculus
ENSKMAG00000006568	a1cf	100	75.935	MGP_PahariEiJ_G0014366	A1cf	100	75.122	Mus_pahari
ENSKMAG00000006568	a1cf	100	76.423	MGP_SPRETEiJ_G0023792	A1cf	100	75.610	Mus_spretus
ENSKMAG00000006568	a1cf	100	71.870	ENSMPUG00000016971	A1CF	100	71.220	Mustela_putorius_furo
ENSKMAG00000006568	a1cf	100	77.236	ENSMLUG00000016071	A1CF	100	77.073	Myotis_lucifugus
ENSKMAG00000006568	a1cf	100	77.561	ENSNGAG00000015136	A1cf	100	76.585	Nannospalax_galili
ENSKMAG00000006568	a1cf	100	86.731	ENSNBRG00000001712	a1cf	100	88.188	Neolamprologus_brichardi
ENSKMAG00000006568	a1cf	100	78.049	ENSNLEG00000012028	A1CF	100	77.236	Nomascus_leucogenys
ENSKMAG00000006568	a1cf	94	76.248	ENSMEUG00000015909	A1CF	100	76.420	Notamacropus_eugenii
ENSKMAG00000006568	a1cf	88	69.944	ENSOPRG00000010667	A1CF	97	68.877	Ochotona_princeps
ENSKMAG00000006568	a1cf	100	86.731	ENSONIG00000019105	a1cf	100	87.702	Oreochromis_niloticus
ENSKMAG00000006568	a1cf	78	77.131	ENSOANG00000007360	A1CF	99	76.091	Ornithorhynchus_anatinus
ENSKMAG00000006568	a1cf	100	75.772	ENSOCUG00000011587	A1CF	100	75.122	Oryctolagus_cuniculus
ENSKMAG00000006568	a1cf	100	84.416	ENSORLG00000013342	a1cf	100	84.091	Oryzias_latipes
ENSKMAG00000006568	a1cf	100	86.548	ENSORLG00020000586	a1cf	100	86.710	Oryzias_latipes_hni
ENSKMAG00000006568	a1cf	100	86.548	ENSORLG00015018569	a1cf	100	86.710	Oryzias_latipes_hsok
ENSKMAG00000006568	a1cf	100	85.877	ENSOMEG00000013531	a1cf	100	85.691	Oryzias_melastigma
ENSKMAG00000006568	a1cf	100	76.260	ENSOGAG00000012884	A1CF	100	76.423	Otolemur_garnettii
ENSKMAG00000006568	a1cf	100	78.374	ENSOARG00000013695	A1CF	100	77.724	Ovis_aries
ENSKMAG00000006568	a1cf	98	75.372	ENSPPAG00000028115	A1CF	99	80.906	Pan_paniscus
ENSKMAG00000006568	a1cf	100	76.985	ENSPPRG00000012180	A1CF	100	76.585	Panthera_pardus
ENSKMAG00000006568	a1cf	100	76.985	ENSPTIG00000021223	A1CF	100	76.585	Panthera_tigris_altaica
ENSKMAG00000006568	a1cf	100	77.398	ENSPTRG00000002508	A1CF	100	76.585	Pan_troglodytes
ENSKMAG00000006568	a1cf	100	76.260	ENSPANG00000021988	A1CF	100	75.447	Papio_anubis
ENSKMAG00000006568	a1cf	100	81.463	ENSPKIG00000025176	a1cf	100	80.488	Paramormyrops_kingsleyae
ENSKMAG00000006568	a1cf	100	76.260	ENSPSIG00000010318	A1CF	100	75.122	Pelodiscus_sinensis
ENSKMAG00000006568	a1cf	98	71.122	ENSPMGG00000013359	a1cf	89	76.710	Periophthalmus_magnuspinnatus
ENSKMAG00000006568	a1cf	100	77.236	ENSPEMG00000015021	A1cf	100	76.423	Peromyscus_maniculatus_bairdii
ENSKMAG00000006568	a1cf	100	75.122	ENSPCIG00000002175	A1CF	100	76.098	Phascolarctos_cinereus
ENSKMAG00000006568	a1cf	100	89.303	ENSPFOG00000007437	-	100	91.248	Poecilia_formosa
ENSKMAG00000006568	a1cf	100	89.303	ENSPFOG00000006683	a1cf	100	91.248	Poecilia_formosa
ENSKMAG00000006568	a1cf	100	87.844	ENSPLAG00000001210	-	100	89.789	Poecilia_latipinna
ENSKMAG00000006568	a1cf	100	87.844	ENSPLAG00000000026	a1cf	100	89.789	Poecilia_latipinna
ENSKMAG00000006568	a1cf	100	80.065	ENSPMEG00000015529	-	100	82.172	Poecilia_mexicana
ENSKMAG00000006568	a1cf	100	78.768	ENSPMEG00000000921	a1cf	100	80.875	Poecilia_mexicana
ENSKMAG00000006568	a1cf	100	89.303	ENSPREG00000016298	a1cf	100	91.086	Poecilia_reticulata
ENSKMAG00000006568	a1cf	100	76.748	ENSPPYG00000002819	A1CF	100	75.935	Pongo_abelii
ENSKMAG00000006568	a1cf	80	59.350	ENSPCAG00000006463	A1CF	68	70.270	Procavia_capensis
ENSKMAG00000006568	a1cf	100	76.585	ENSPCOG00000024172	A1CF	100	76.748	Propithecus_coquereli
ENSKMAG00000006568	a1cf	100	88.026	ENSPNYG00000017944	a1cf	100	89.482	Pundamilia_nyererei
ENSKMAG00000006568	a1cf	100	82.602	ENSPNAG00000007704	a1cf	100	81.463	Pygocentrus_nattereri
ENSKMAG00000006568	a1cf	100	75.772	ENSRNOG00000033195	A1cf	100	74.959	Rattus_norvegicus
ENSKMAG00000006568	a1cf	100	72.123	ENSRBIG00000042892	A1CF	100	73.208	Rhinopithecus_bieti
ENSKMAG00000006568	a1cf	100	77.398	ENSRROG00000041398	A1CF	100	76.585	Rhinopithecus_roxellana
ENSKMAG00000006568	a1cf	100	78.211	ENSSBOG00000021930	A1CF	100	77.398	Saimiri_boliviensis_boliviensis
ENSKMAG00000006568	a1cf	100	76.911	ENSSHAG00000005096	A1CF	100	77.073	Sarcophilus_harrisii
ENSKMAG00000006568	a1cf	100	82.439	ENSSFOG00015011774	a1cf	100	81.463	Scleropages_formosus
ENSKMAG00000006568	a1cf	100	85.299	ENSSMAG00000013271	a1cf	100	87.237	Scophthalmus_maximus
ENSKMAG00000006568	a1cf	100	88.130	ENSSDUG00000013930	a1cf	100	86.829	Seriola_dumerili
ENSKMAG00000006568	a1cf	100	79.512	ENSSLDG00000004290	a1cf	100	79.512	Seriola_lalandi_dorsalis
ENSKMAG00000006568	a1cf	95	68.664	ENSSARG00000005940	A1CF	95	68.493	Sorex_araneus
ENSKMAG00000006568	a1cf	97	75.418	ENSSPUG00000006797	A1CF	96	74.497	Sphenodon_punctatus
ENSKMAG00000006568	a1cf	100	78.374	ENSSSCG00000010431	A1CF	100	77.886	Sus_scrofa
ENSKMAG00000006568	a1cf	100	79.187	ENSTGUG00000005090	A1CF	100	78.374	Taeniopygia_guttata
ENSKMAG00000006568	a1cf	100	85.922	ENSTRUG00000001982	a1cf	100	86.570	Takifugu_rubripes
ENSKMAG00000006568	a1cf	100	85.784	ENSTNIG00000003580	a1cf	100	85.784	Tetraodon_nigroviridis
ENSKMAG00000006568	a1cf	97	71.309	ENSTTRG00000013190	A1CF	95	70.638	Tursiops_truncatus
ENSKMAG00000006568	a1cf	100	76.098	ENSUAMG00000020065	A1CF	100	75.122	Ursus_americanus
ENSKMAG00000006568	a1cf	100	76.748	ENSUMAG00000011162	A1CF	100	75.935	Ursus_maritimus
ENSKMAG00000006568	a1cf	87	74.254	ENSVPAG00000006130	A1CF	86	73.321	Vicugna_pacos
ENSKMAG00000006568	a1cf	100	76.260	ENSVVUG00000002504	A1CF	100	75.285	Vulpes_vulpes
ENSKMAG00000006568	a1cf	100	71.707	ENSXETG00000006611	a1cf	100	70.732	Xenopus_tropicalis
ENSKMAG00000006568	a1cf	100	89.627	ENSXCOG00000003302	a1cf	100	88.817	Xiphophorus_couchianus
ENSKMAG00000006568	a1cf	100	90.924	ENSXMAG00000016703	a1cf	100	90.113	Xiphophorus_maculatus