EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000007239 (Gene tree)
Gene ID: 108236452
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 6485 bases
Position: chrLWHD01000040.1:3365601-3372085
Accession: 108236452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000009654	SMN	PF06003.12	8.6e-111	1	1
ENSKMAP00000009633	SMN	PF06003.12	1.3e-109	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000009780	-	1098	-	ENSKMAP00000009633	268 (aa)	-	-
ENSKMAT00000009801	-	1027	XM_017417110	ENSKMAP00000009654	282 (aa)	XP_017272599	UPI0007F91C9F

Gene Model

Click here to download ENSKMAG00000007239's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000007239's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000007239	smn1	96	53.817	ENSG00000172062	SMN1	92	54.380	Homo_sapiens
ENSKMAG00000007239	smn1	96	53.817	ENSG00000205571	SMN2	92	54.380	Homo_sapiens
ENSKMAG00000007239	smn1	100	80.420	ENSAPOG00000011324	smn1	100	80.420	Acanthochromis_polyacanthus
ENSKMAG00000007239	smn1	96	49.615	ENSAMEG00000003316	-	89	52.899	Ailuropoda_melanoleuca
ENSKMAG00000007239	smn1	60	72.840	ENSACIG00000007598	smn1	91	76.970	Amphilophus_citrinellus
ENSKMAG00000007239	smn1	93	74.717	ENSACIG00000019772	-	99	73.585	Amphilophus_citrinellus
ENSKMAG00000007239	smn1	100	80.070	ENSAOCG00000024444	smn1	100	80.070	Amphiprion_ocellaris
ENSKMAG00000007239	smn1	100	80.420	ENSAPEG00000016504	smn1	100	80.420	Amphiprion_percula
ENSKMAG00000007239	smn1	95	81.319	ENSATEG00000002182	smn1	82	81.319	Anabas_testudineus
ENSKMAG00000007239	smn1	73	42.273	ENSAPLG00000010912	-	96	46.734	Anas_platyrhynchos
ENSKMAG00000007239	smn1	99	49.451	ENSACAG00000010017	-	96	50.000	Anolis_carolinensis
ENSKMAG00000007239	smn1	96	54.373	ENSANAG00000032133	-	92	53.818	Aotus_nancymaae
ENSKMAG00000007239	smn1	99	79.182	ENSACLG00000007308	smn1	94	77.580	Astatotilapia_calliptera
ENSKMAG00000007239	smn1	100	60.777	ENSAMXG00000013884	smn1	100	63.509	Astyanax_mexicanus
ENSKMAG00000007239	smn1	99	51.119	ENSBTAG00000005743	SMN2	95	52.448	Bos_taurus
ENSKMAG00000007239	smn1	55	62.658	ENSCJAG00000016290	-	92	48.780	Callithrix_jacchus
ENSKMAG00000007239	smn1	96	51.908	ENSCAFG00000007812	SMN	93	52.536	Canis_familiaris
ENSKMAG00000007239	smn1	96	51.908	ENSCAFG00020019229	-	86	49.827	Canis_lupus_dingo
ENSKMAG00000007239	smn1	96	51.923	ENSCHIG00000015559	-	91	53.214	Capra_hircus
ENSKMAG00000007239	smn1	96	52.672	ENSTSYG00000012058	-	93	52.431	Carlito_syrichta
ENSKMAG00000007239	smn1	81	44.444	ENSCAPG00000011021	-	88	45.545	Cavia_aperea
ENSKMAG00000007239	smn1	96	49.811	ENSCPOG00000036973	-	92	52.669	Cavia_porcellus
ENSKMAG00000007239	smn1	96	49.438	ENSCPOG00000012328	-	93	52.797	Cavia_porcellus
ENSKMAG00000007239	smn1	96	49.808	ENSCCAG00000018127	-	91	52.727	Cebus_capucinus
ENSKMAG00000007239	smn1	96	52.672	ENSCATG00000037002	-	92	54.380	Cercocebus_atys
ENSKMAG00000007239	smn1	96	49.624	ENSCLAG00000000284	-	92	48.288	Chinchilla_lanigera
ENSKMAG00000007239	smn1	96	53.053	ENSCSAG00000015688	-	91	54.417	Chlorocebus_sabaeus
ENSKMAG00000007239	smn1	57	56.579	ENSCHOG00000007346	-	57	58.741	Choloepus_hoffmanni
ENSKMAG00000007239	smn1	96	50.714	ENSCPBG00000010968	-	97	47.794	Chrysemys_picta_bellii
ENSKMAG00000007239	smn1	93	52.941	ENSCANG00000033324	-	89	53.455	Colobus_angolensis_palliatus
ENSKMAG00000007239	smn1	96	53.435	ENSCANG00000038242	-	93	55.147	Colobus_angolensis_palliatus
ENSKMAG00000007239	smn1	94	39.700	ENSCGRG00001016998	-	91	37.143	Cricetulus_griseus_chok1gshd
ENSKMAG00000007239	smn1	96	52.107	ENSCGRG00001017959	-	93	52.747	Cricetulus_griseus_chok1gshd
ENSKMAG00000007239	smn1	96	52.107	ENSCGRG00000007698	Smn1	93	52.747	Cricetulus_griseus_crigri
ENSKMAG00000007239	smn1	96	65.314	ENSCSEG00000015227	smn1	99	65.724	Cynoglossus_semilaevis
ENSKMAG00000007239	smn1	100	80.139	ENSCVAG00000007498	smn1	100	80.139	Cyprinodon_variegatus
ENSKMAG00000007239	smn1	100	59.933	ENSDARG00000018494	smn1	100	59.930	Danio_rerio
ENSKMAG00000007239	smn1	58	51.807	ENSDNOG00000045949	-	70	51.235	Dasypus_novemcinctus
ENSKMAG00000007239	smn1	87	45.041	ENSDNOG00000007283	-	97	45.276	Dasypus_novemcinctus
ENSKMAG00000007239	smn1	93	44.867	ENSDORG00000007082	Smn1	90	44.815	Dipodomys_ordii
ENSKMAG00000007239	smn1	58	43.529	ENSETEG00000001406	-	81	45.238	Echinops_telfairi
ENSKMAG00000007239	smn1	96	41.356	ENSEBUG00000011902	smn1	69	76.667	Eptatretus_burgeri
ENSKMAG00000007239	smn1	94	47.471	ENSEASG00005018000	-	90	47.925	Equus_asinus_asinus
ENSKMAG00000007239	smn1	96	51.145	ENSECAG00000015215	-	93	52.143	Equus_caballus
ENSKMAG00000007239	smn1	93	47.308	ENSEEUG00000015777	-	100	45.736	Erinaceus_europaeus
ENSKMAG00000007239	smn1	97	66.788	ENSELUG00000018067	smn1	100	65.385	Esox_lucius
ENSKMAG00000007239	smn1	96	50.769	ENSFCAG00000028292	SMN	92	53.047	Felis_catus
ENSKMAG00000007239	smn1	99	55.678	ENSFALG00000012320	-	95	50.725	Ficedula_albicollis
ENSKMAG00000007239	smn1	96	47.619	ENSFDAG00000017683	-	92	47.735	Fukomys_damarensis
ENSKMAG00000007239	smn1	99	79.705	ENSFHEG00000018508	smn1	100	79.928	Fundulus_heteroclitus
ENSKMAG00000007239	smn1	100	64.184	ENSGMOG00000017279	smn1	98	62.937	Gadus_morhua
ENSKMAG00000007239	smn1	95	51.264	ENSGALG00000002430	SMN	97	51.737	Gallus_gallus
ENSKMAG00000007239	smn1	100	81.469	ENSGAFG00000009501	smn1	100	81.469	Gambusia_affinis
ENSKMAG00000007239	smn1	100	77.544	ENSGACG00000010584	smn1	97	76.140	Gasterosteus_aculeatus
ENSKMAG00000007239	smn1	61	56.742	ENSGAGG00000011374	-	95	53.147	Gopherus_agassizii
ENSKMAG00000007239	smn1	97	35.075	ENSGAGG00000013639	-	92	36.408	Gopherus_agassizii
ENSKMAG00000007239	smn1	93	49.799	ENSGGOG00000003872	-	93	49.248	Gorilla_gorilla
ENSKMAG00000007239	smn1	55	61.392	ENSGGOG00000026704	-	79	59.412	Gorilla_gorilla
ENSKMAG00000007239	smn1	100	78.596	ENSHBUG00000013987	smn1	100	78.596	Haplochromis_burtoni
ENSKMAG00000007239	smn1	96	50.752	ENSHGLG00000001018	-	92	50.000	Heterocephalus_glaber_female
ENSKMAG00000007239	smn1	96	47.710	ENSHGLG00000001905	-	94	48.399	Heterocephalus_glaber_female
ENSKMAG00000007239	smn1	96	50.752	ENSHGLG00100011252	-	92	50.000	Heterocephalus_glaber_male
ENSKMAG00000007239	smn1	94	47.656	ENSHGLG00100018676	-	96	48.364	Heterocephalus_glaber_male
ENSKMAG00000007239	smn1	94	67.260	ENSHCOG00000017136	smn1	89	72.015	Hippocampus_comes
ENSKMAG00000007239	smn1	100	59.259	ENSIPUG00000012580	smn1	89	63.860	Ictalurus_punctatus
ENSKMAG00000007239	smn1	93	50.598	ENSSTOG00000012288	-	93	49.819	Ictidomys_tridecemlineatus
ENSKMAG00000007239	smn1	58	46.386	ENSJJAG00000014853	-	85	48.214	Jaculus_jaculus
ENSKMAG00000007239	smn1	100	80.488	ENSLBEG00000022550	smn1	100	80.488	Labrus_bergylta
ENSKMAG00000007239	smn1	95	35.165	ENSLACG00000009808	-	94	35.811	Latimeria_chalumnae
ENSKMAG00000007239	smn1	100	53.356	ENSLOCG00000011339	smn1	100	56.098	Lepisosteus_oculatus
ENSKMAG00000007239	smn1	98	31.724	ENSLOCG00000000801	-	81	31.008	Lepisosteus_oculatus
ENSKMAG00000007239	smn1	96	48.905	ENSLAFG00000003425	-	89	52.688	Loxodonta_africana
ENSKMAG00000007239	smn1	96	50.763	ENSMFAG00000008812	-	91	51.943	Macaca_fascicularis
ENSKMAG00000007239	smn1	96	53.435	ENSMFAG00000031523	SMN1	95	53.818	Macaca_fascicularis
ENSKMAG00000007239	smn1	96	53.435	ENSMMUG00000020214	SMN1	92	55.109	Macaca_mulatta
ENSKMAG00000007239	smn1	96	50.000	ENSMMUG00000030594	-	91	51.237	Macaca_mulatta
ENSKMAG00000007239	smn1	78	42.056	ENSMNEG00000036423	-	81	42.793	Macaca_nemestrina
ENSKMAG00000007239	smn1	96	53.435	ENSMNEG00000035094	-	92	55.109	Macaca_nemestrina
ENSKMAG00000007239	smn1	96	53.435	ENSMLEG00000041902	-	93	55.109	Mandrillus_leucophaeus
ENSKMAG00000007239	smn1	100	78.746	ENSMAMG00000011034	smn1	100	78.746	Mastacembelus_armatus
ENSKMAG00000007239	smn1	100	78.947	ENSMZEG00005013634	smn1	100	78.947	Maylandia_zebra
ENSKMAG00000007239	smn1	73	48.744	ENSMGAG00000008889	-	94	42.211	Meleagris_gallopavo
ENSKMAG00000007239	smn1	96	51.908	ENSMAUG00000010262	Smn1	93	52.381	Mesocricetus_auratus
ENSKMAG00000007239	smn1	83	46.748	ENSMICG00000034708	-	73	59.259	Microcebus_murinus
ENSKMAG00000007239	smn1	96	53.053	ENSMOCG00000017833	Smn1	92	54.444	Microtus_ochrogaster
ENSKMAG00000007239	smn1	98	63.986	ENSMMOG00000005504	smn1	99	62.587	Mola_mola
ENSKMAG00000007239	smn1	96	51.111	ENSMODG00000001436	-	92	49.458	Monodelphis_domestica
ENSKMAG00000007239	smn1	100	80.836	ENSMALG00000008025	smn1	100	80.836	Monopterus_albus
ENSKMAG00000007239	smn1	97	51.301	MGP_CAROLIEiJ_G0018836	Smn1	94	53.237	Mus_caroli
ENSKMAG00000007239	smn1	96	51.136	ENSMUSG00000021645	Smn1	93	52.920	Mus_musculus
ENSKMAG00000007239	smn1	96	48.496	MGP_PahariEiJ_G0015911	Smn1	93	52.574	Mus_pahari
ENSKMAG00000007239	smn1	97	51.301	MGP_SPRETEiJ_G0019718	Smn1	94	52.518	Mus_spretus
ENSKMAG00000007239	smn1	94	51.362	ENSMPUG00000014470	-	93	50.000	Mustela_putorius_furo
ENSKMAG00000007239	smn1	96	50.909	ENSMLUG00000010603	-	89	52.265	Myotis_lucifugus
ENSKMAG00000007239	smn1	96	52.107	ENSNGAG00000019833	Smn1	93	51.301	Nannospalax_galili
ENSKMAG00000007239	smn1	100	80.351	ENSNBRG00000023000	smn1	100	79.649	Neolamprologus_brichardi
ENSKMAG00000007239	smn1	96	53.992	ENSNLEG00000004454	-	92	54.745	Nomascus_leucogenys
ENSKMAG00000007239	smn1	84	44.958	ENSMEUG00000011393	-	100	40.851	Notamacropus_eugenii
ENSKMAG00000007239	smn1	93	51.550	ENSOPRG00000002015	-	100	53.282	Ochotona_princeps
ENSKMAG00000007239	smn1	93	51.181	ENSODEG00000015976	-	91	53.506	Octodon_degus
ENSKMAG00000007239	smn1	100	79.649	ENSONIG00000011799	smn1	100	78.947	Oreochromis_niloticus
ENSKMAG00000007239	smn1	96	46.691	ENSOANG00000001626	-	95	47.482	Ornithorhynchus_anatinus
ENSKMAG00000007239	smn1	96	50.936	ENSOCUG00000026649	-	92	47.518	Oryctolagus_cuniculus
ENSKMAG00000007239	smn1	94	43.015	ENSOCUG00000025183	-	92	43.571	Oryctolagus_cuniculus
ENSKMAG00000007239	smn1	96	51.154	ENSOCUG00000017097	-	92	49.275	Oryctolagus_cuniculus
ENSKMAG00000007239	smn1	100	74.564	ENSORLG00000010552	smn1	100	76.224	Oryzias_latipes
ENSKMAG00000007239	smn1	100	69.097	ENSORLG00020007936	smn1	100	67.247	Oryzias_latipes_hni
ENSKMAG00000007239	smn1	100	74.913	ENSORLG00015022425	smn1	100	76.573	Oryzias_latipes_hsok
ENSKMAG00000007239	smn1	100	76.224	ENSOMEG00000007824	smn1	100	76.923	Oryzias_melastigma
ENSKMAG00000007239	smn1	93	47.692	ENSOGAG00000031414	-	92	46.863	Otolemur_garnettii
ENSKMAG00000007239	smn1	96	52.510	ENSOARG00000005425	-	97	52.158	Ovis_aries
ENSKMAG00000007239	smn1	96	52.672	ENSPPAG00000036640	-	92	54.380	Pan_paniscus
ENSKMAG00000007239	smn1	96	50.769	ENSPPRG00000005575	-	93	52.857	Panthera_pardus
ENSKMAG00000007239	smn1	96	50.385	ENSPTIG00000007745	-	93	52.500	Panthera_tigris_altaica
ENSKMAG00000007239	smn1	96	53.232	ENSPTRG00000016955	-	92	53.791	Pan_troglodytes
ENSKMAG00000007239	smn1	96	51.145	ENSPANG00000000253	-	91	52.297	Papio_anubis
ENSKMAG00000007239	smn1	96	53.435	ENSPANG00000013601	-	91	54.770	Papio_anubis
ENSKMAG00000007239	smn1	100	56.897	ENSPKIG00000011096	smn1	100	52.613	Paramormyrops_kingsleyae
ENSKMAG00000007239	smn1	96	48.881	ENSPSIG00000014787	-	86	48.029	Pelodiscus_sinensis
ENSKMAG00000007239	smn1	100	70.526	ENSPMGG00000012285	smn1	97	74.074	Periophthalmus_magnuspinnatus
ENSKMAG00000007239	smn1	96	39.706	ENSPMAG00000005004	smn1	91	35.664	Petromyzon_marinus
ENSKMAG00000007239	smn1	96	50.923	ENSPCIG00000025764	-	93	48.736	Phascolarctos_cinereus
ENSKMAG00000007239	smn1	100	80.070	ENSPFOG00000007786	smn1	100	80.070	Poecilia_formosa
ENSKMAG00000007239	smn1	100	80.420	ENSPLAG00000012071	smn1	100	80.420	Poecilia_latipinna
ENSKMAG00000007239	smn1	100	80.070	ENSPMEG00000017085	smn1	100	80.070	Poecilia_mexicana
ENSKMAG00000007239	smn1	100	80.769	ENSPREG00000005824	smn1	100	80.769	Poecilia_reticulata
ENSKMAG00000007239	smn1	96	53.817	ENSPPYG00000015533	-	95	53.091	Pongo_abelii
ENSKMAG00000007239	smn1	62	73.077	ENSPPYG00000019189	-	99	35.887	Pongo_abelii
ENSKMAG00000007239	smn1	96	52.045	ENSPCAG00000004187	-	98	51.095	Procavia_capensis
ENSKMAG00000007239	smn1	66	52.486	ENSPCOG00000022307	-	68	58.667	Propithecus_coquereli
ENSKMAG00000007239	smn1	96	52.308	ENSPVAG00000005977	-	92	51.903	Pteropus_vampyrus
ENSKMAG00000007239	smn1	100	80.351	ENSPNYG00000014148	smn1	100	79.649	Pundamilia_nyererei
ENSKMAG00000007239	smn1	100	60.339	ENSPNAG00000014007	smn1	87	63.287	Pygocentrus_nattereri
ENSKMAG00000007239	smn1	97	52.434	ENSRNOG00000018067	Smn1	93	53.091	Rattus_norvegicus
ENSKMAG00000007239	smn1	93	49.012	ENSRBIG00000036775	-	88	51.698	Rhinopithecus_bieti
ENSKMAG00000007239	smn1	96	53.053	ENSRBIG00000037052	-	91	54.417	Rhinopithecus_bieti
ENSKMAG00000007239	smn1	96	49.231	ENSRROG00000031088	-	91	50.916	Rhinopithecus_roxellana
ENSKMAG00000007239	smn1	96	53.053	ENSRROG00000039399	-	92	54.745	Rhinopithecus_roxellana
ENSKMAG00000007239	smn1	96	46.154	ENSSBOG00000011665	-	91	53.818	Saimiri_boliviensis_boliviensis
ENSKMAG00000007239	smn1	96	52.222	ENSSHAG00000001499	-	98	47.653	Sarcophilus_harrisii
ENSKMAG00000007239	smn1	100	59.011	ENSSFOG00015015507	smn1	100	59.011	Scleropages_formosus
ENSKMAG00000007239	smn1	100	78.596	ENSSMAG00000007922	smn1	100	77.895	Scophthalmus_maximus
ENSKMAG00000007239	smn1	100	83.624	ENSSDUG00000018533	smn1	100	83.624	Seriola_dumerili
ENSKMAG00000007239	smn1	100	83.972	ENSSLDG00000021135	smn1	100	83.972	Seriola_lalandi_dorsalis
ENSKMAG00000007239	smn1	96	53.571	ENSSPUG00000000373	-	98	48.630	Sphenodon_punctatus
ENSKMAG00000007239	smn1	100	81.818	ENSSPAG00000004345	smn1	100	81.818	Stegastes_partitus
ENSKMAG00000007239	smn1	96	39.179	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSKMAG00000007239	smn1	96	50.000	ENSSSCG00000016970	-	92	51.220	Sus_scrofa
ENSKMAG00000007239	smn1	93	51.439	ENSTGUG00000001548	-	97	48.201	Taeniopygia_guttata
ENSKMAG00000007239	smn1	100	62.766	ENSTRUG00000000736	smn	100	66.783	Takifugu_rubripes
ENSKMAG00000007239	smn1	100	64.483	ENSTNIG00000009892	smn1	100	65.172	Tetraodon_nigroviridis
ENSKMAG00000007239	smn1	57	59.412	ENSTBEG00000002399	-	87	57.222	Tupaia_belangeri
ENSKMAG00000007239	smn1	96	46.212	ENSTTRG00000005080	-	91	51.579	Tursiops_truncatus
ENSKMAG00000007239	smn1	57	57.647	ENSUAMG00000024947	-	60	57.738	Ursus_americanus
ENSKMAG00000007239	smn1	96	50.385	ENSUMAG00000007842	-	69	53.623	Ursus_maritimus
ENSKMAG00000007239	smn1	93	48.606	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSKMAG00000007239	smn1	96	51.908	ENSVVUG00000006934	-	93	52.536	Vulpes_vulpes
ENSKMAG00000007239	smn1	96	55.303	ENSXETG00000018189	smn2	95	53.521	Xenopus_tropicalis
ENSKMAG00000007239	smn1	92	31.698	ENSXETG00000004912	-	78	61.818	Xenopus_tropicalis
ENSKMAG00000007239	smn1	100	79.371	ENSXMAG00000001521	smn1	100	79.371	Xiphophorus_maculatus