EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000007317 (Gene tree)
Gene ID
108232094
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Minus strand
Length
7054 bases
Position
chrLWHD01000002.1:4822606-4829659
Accession
108232094
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000009757CPSF73-100_CPF11718.81.6e-5011
ENSKMAP00000009757Beta-CaspPF10996.86.7e-3411
ENSKMAP00000009757Lactamase_BPF00753.271.4e-1811
ENSKMAP00000009757RMMBLPF07521.125.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000009906CPSF3-2014521XM_017409676ENSKMAP00000009757690 (aa)XP_017265165UPI0007F88BD0
Gene Model
Click here to download ENSKMAG00000007317's gene model file
Pathways
Pathway IDPathway NameSource
kmr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000007317's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000007317CPSF36539.207ENSKMAG00000003315ints117439.207
ENSKMAG00000007317CPSF39986.337ENSKMAG00000002806cpsf39986.337
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000007317CPSF39887.647ENSG00000119203CPSF310099.265Homo_sapiens
ENSKMAG00000007317CPSF39987.791ENSAPOG00000022087cpsf39987.791Acanthochromis_polyacanthus
ENSKMAG00000007317CPSF37598.256ENSAPOG00000012241CPSF39298.256Acanthochromis_polyacanthus
ENSKMAG00000007317CPSF39887.794ENSAMEG00000008493CPSF39987.794Ailuropoda_melanoleuca
ENSKMAG00000007317CPSF39194.453ENSACIG00000023663CPSF310087.699Amphilophus_citrinellus
ENSKMAG00000007317CPSF39184.236ENSACIG00000009846cpsf39978.520Amphilophus_citrinellus
ENSKMAG00000007317CPSF39987.645ENSAOCG00000022056cpsf310089.172Amphiprion_ocellaris
ENSKMAG00000007317CPSF310097.826ENSAOCG00000010077CPSF310097.826Amphiprion_ocellaris
ENSKMAG00000007317CPSF310097.826ENSAPEG00000021167CPSF310097.826Amphiprion_percula
ENSKMAG00000007317CPSF39987.791ENSAPEG00000019526cpsf39989.041Amphiprion_percula
ENSKMAG00000007317CPSF310089.420ENSATEG00000014525CPSF310089.420Anabas_testudineus
ENSKMAG00000007317CPSF39987.645ENSATEG00000003959cpsf39987.645Anabas_testudineus
ENSKMAG00000007317CPSF39787.779ENSAPLG00000006941CPSF39887.779Anas_platyrhynchos
ENSKMAG00000007317CPSF39284.882ENSACAG00000001759CPSF39984.882Anolis_carolinensis
ENSKMAG00000007317CPSF39882.206ENSANAG00000031254CPSF39982.609Aotus_nancymaae
ENSKMAG00000007317CPSF39687.801ENSACLG00000014484cpsf39987.801Astatotilapia_calliptera
ENSKMAG00000007317CPSF39895.246ENSACLG00000018846CPSF310088.423Astatotilapia_calliptera
ENSKMAG00000007317CPSF310089.275ENSAMXG00000004786cpsf310089.275Astyanax_mexicanus
ENSKMAG00000007317CPSF39887.794ENSBTAG00000019735CPSF39987.794Bos_taurus
ENSKMAG00000007317CPSF39356.773WBGene00013460cpsf-39256.773Caenorhabditis_elegans
ENSKMAG00000007317CPSF39887.500ENSCJAG00000006276CPSF39987.500Callithrix_jacchus
ENSKMAG00000007317CPSF39887.794ENSCAFG00000003375CPSF39587.794Canis_familiaris
ENSKMAG00000007317CPSF38990.584ENSCAFG00020026799CPSF39990.584Canis_lupus_dingo
ENSKMAG00000007317CPSF39887.794ENSCHIG00000013973CPSF39987.794Capra_hircus
ENSKMAG00000007317CPSF39887.647ENSTSYG00000002967CPSF39987.647Carlito_syrichta
ENSKMAG00000007317CPSF39687.988ENSCAPG00000013851CPSF39987.988Cavia_aperea
ENSKMAG00000007317CPSF39888.088ENSCPOG00000011299CPSF39988.088Cavia_porcellus
ENSKMAG00000007317CPSF39887.500ENSCCAG00000036730CPSF39987.500Cebus_capucinus
ENSKMAG00000007317CPSF39885.882ENSCATG00000014770CPSF39993.080Cercocebus_atys
ENSKMAG00000007317CPSF39887.941ENSCLAG00000002727CPSF39987.941Chinchilla_lanigera
ENSKMAG00000007317CPSF39879.706ENSCSAG00000007125CPSF39979.706Chlorocebus_sabaeus
ENSKMAG00000007317CPSF385100.000ENSCHOG00000000180CPSF38563.269Choloepus_hoffmanni
ENSKMAG00000007317CPSF39987.391ENSCPBG00000014074CPSF39987.391Chrysemys_picta_bellii
ENSKMAG00000007317CPSF39867.350ENSCING00000007214-9867.350Ciona_intestinalis
ENSKMAG00000007317CPSF39877.372ENSCANG00000034435CPSF39977.372Colobus_angolensis_palliatus
ENSKMAG00000007317CPSF39887.500ENSCGRG00001013134Cpsf39987.500Cricetulus_griseus_chok1gshd
ENSKMAG00000007317CPSF39887.500ENSCGRG00000018319Cpsf39987.500Cricetulus_griseus_crigri
ENSKMAG00000007317CPSF310092.764ENSCSEG00000002021CPSF310093.045Cynoglossus_semilaevis
ENSKMAG00000007317CPSF310096.377ENSCVAG00000015067CPSF310096.377Cyprinodon_variegatus
ENSKMAG00000007317CPSF310089.420ENSDARG00000027649cpsf310089.420Danio_rerio
ENSKMAG00000007317CPSF39886.784ENSDNOG00000008940CPSF39586.784Dasypus_novemcinctus
ENSKMAG00000007317CPSF39488.735ENSDORG00000014263Cpsf39988.735Dipodomys_ordii
ENSKMAG00000007317CPSF39966.035FBgn0261065Cpsf739966.035Drosophila_melanogaster
ENSKMAG00000007317CPSF39476.543ENSETEG00000003893CPSF39976.543Echinops_telfairi
ENSKMAG00000007317CPSF39976.338ENSEBUG00000009018cpsf39976.761Eptatretus_burgeri
ENSKMAG00000007317CPSF39887.794ENSEASG00005003970CPSF39987.794Equus_asinus_asinus
ENSKMAG00000007317CPSF39887.794ENSECAG00000019911CPSF39692.736Equus_caballus
ENSKMAG00000007317CPSF39872.500ENSEEUG00000015422CPSF39972.500Erinaceus_europaeus
ENSKMAG00000007317CPSF39990.552ENSELUG00000013775cpsf39990.552Esox_lucius
ENSKMAG00000007317CPSF39887.794ENSFCAG00000007852CPSF39987.794Felis_catus
ENSKMAG00000007317CPSF39387.307ENSFALG00000006572CPSF39987.307Ficedula_albicollis
ENSKMAG00000007317CPSF39887.334ENSFDAG00000006317CPSF39987.334Fukomys_damarensis
ENSKMAG00000007317CPSF39986.192ENSFHEG00000014774cpsf39986.192Fundulus_heteroclitus
ENSKMAG00000007317CPSF35980.244ENSFHEG00000012186CPSF310080.244Fundulus_heteroclitus
ENSKMAG00000007317CPSF310088.116ENSGMOG00000003157cpsf310088.116Gadus_morhua
ENSKMAG00000007317CPSF39987.064ENSGALG00000016424CPSF39987.064Gallus_gallus
ENSKMAG00000007317CPSF39184.102ENSGAFG00000019449cpsf310078.116Gambusia_affinis
ENSKMAG00000007317CPSF310095.942ENSGAFG00000008016CPSF310095.942Gambusia_affinis
ENSKMAG00000007317CPSF36883.726ENSGAGG00000025583CPSF39383.726Gopherus_agassizii
ENSKMAG00000007317CPSF39885.468ENSGGOG00000001757CPSF39197.849Gorilla_gorilla
ENSKMAG00000007317CPSF39987.645ENSHBUG00000001188cpsf39987.645Haplochromis_burtoni
ENSKMAG00000007317CPSF35990.864ENSHBUG00000014332CPSF310090.864Haplochromis_burtoni
ENSKMAG00000007317CPSF39887.776ENSHGLG00000000666CPSF39887.776Heterocephalus_glaber_female
ENSKMAG00000007317CPSF39887.776ENSHGLG00100007765CPSF39887.776Heterocephalus_glaber_male
ENSKMAG00000007317CPSF39993.904ENSHCOG00000015957CPSF39993.904Hippocampus_comes
ENSKMAG00000007317CPSF39986.357ENSHCOG00000007251cpsf39986.357Hippocampus_comes
ENSKMAG00000007317CPSF310088.986ENSIPUG00000023488cpsf310088.986Ictalurus_punctatus
ENSKMAG00000007317CPSF39887.647ENSSTOG00000004476CPSF39987.647Ictidomys_tridecemlineatus
ENSKMAG00000007317CPSF39887.059ENSJJAG00000023415Cpsf39987.059Jaculus_jaculus
ENSKMAG00000007317CPSF39980.959ENSLBEG00000020569cpsf39680.959Labrus_bergylta
ENSKMAG00000007317CPSF35482.258ENSLBEG00000015018-9982.258Labrus_bergylta
ENSKMAG00000007317CPSF39597.412ENSLBEG00000013492CPSF39997.412Labrus_bergylta
ENSKMAG00000007317CPSF310080.463ENSLACG00000008308CPSF310080.463Latimeria_chalumnae
ENSKMAG00000007317CPSF310089.899ENSLOCG00000016823cpsf310089.899Lepisosteus_oculatus
ENSKMAG00000007317CPSF39886.303ENSLAFG00000009467CPSF39986.303Loxodonta_africana
ENSKMAG00000007317CPSF39887.500ENSMFAG00000001339CPSF39495.000Macaca_fascicularis
ENSKMAG00000007317CPSF39386.997ENSMMUG00000018038CPSF39295.000Macaca_mulatta
ENSKMAG00000007317CPSF39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSKMAG00000007317CPSF39887.647ENSMLEG00000026825CPSF39297.639Mandrillus_leucophaeus
ENSKMAG00000007317CPSF39194.146ENSMAMG00000008835CPSF310087.572Mastacembelus_armatus
ENSKMAG00000007317CPSF39987.500ENSMAMG00000003076cpsf39987.500Mastacembelus_armatus
ENSKMAG00000007317CPSF310096.667ENSMZEG00005006258CPSF310096.667Maylandia_zebra
ENSKMAG00000007317CPSF39987.645ENSMZEG00005014358cpsf39987.645Maylandia_zebra
ENSKMAG00000007317CPSF39687.538ENSMGAG00000013995CPSF39987.538Meleagris_gallopavo
ENSKMAG00000007317CPSF35478.133ENSMAUG00000000166Cpsf39978.133Mesocricetus_auratus
ENSKMAG00000007317CPSF39882.769ENSMICG00000002363CPSF39982.769Microcebus_murinus
ENSKMAG00000007317CPSF39885.000ENSMOCG00000020067Cpsf39985.000Microtus_ochrogaster
ENSKMAG00000007317CPSF38072.917ENSMMOG00000011923CPSF38578.571Mola_mola
ENSKMAG00000007317CPSF39382.919ENSMMOG00000018212CPSF39882.919Mola_mola
ENSKMAG00000007317CPSF39886.900ENSMODG00000014703CPSF39986.900Monodelphis_domestica
ENSKMAG00000007317CPSF39290.952ENSMALG00000011474CPSF310090.952Monopterus_albus
ENSKMAG00000007317CPSF39987.791ENSMALG00000016416cpsf39987.791Monopterus_albus
ENSKMAG00000007317CPSF39887.206MGP_CAROLIEiJ_G0017640Cpsf39987.206Mus_caroli
ENSKMAG00000007317CPSF39887.206ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSKMAG00000007317CPSF39887.059MGP_PahariEiJ_G0029397Cpsf39987.059Mus_pahari
ENSKMAG00000007317CPSF39887.206MGP_SPRETEiJ_G0018481Cpsf39987.206Mus_spretus
ENSKMAG00000007317CPSF39887.776ENSMPUG00000013213CPSF39987.776Mustela_putorius_furo
ENSKMAG00000007317CPSF39887.959ENSMLUG00000010636CPSF39987.959Myotis_lucifugus
ENSKMAG00000007317CPSF39887.353ENSNGAG00000019836Cpsf39987.353Nannospalax_galili
ENSKMAG00000007317CPSF39895.246ENSNBRG00000010525CPSF310088.423Neolamprologus_brichardi
ENSKMAG00000007317CPSF39987.355ENSNBRG00000004770cpsf39987.355Neolamprologus_brichardi
ENSKMAG00000007317CPSF39887.500ENSNLEG00000013359CPSF39197.849Nomascus_leucogenys
ENSKMAG00000007317CPSF39857.353ENSMEUG00000013117-9957.353Notamacropus_eugenii
ENSKMAG00000007317CPSF39878.940ENSOPRG00000008902CPSF39978.940Ochotona_princeps
ENSKMAG00000007317CPSF39888.088ENSODEG00000003129CPSF39988.088Octodon_degus
ENSKMAG00000007317CPSF39987.936ENSONIG00000018812cpsf39987.936Oreochromis_niloticus
ENSKMAG00000007317CPSF38185.790ENSOANG00000008577CPSF39985.790Ornithorhynchus_anatinus
ENSKMAG00000007317CPSF39887.500ENSOCUG00000003728CPSF39987.500Oryctolagus_cuniculus
ENSKMAG00000007317CPSF39986.047ENSORLG00000018854cpsf39986.047Oryzias_latipes
ENSKMAG00000007317CPSF39986.192ENSORLG00020013331cpsf39986.192Oryzias_latipes_hni
ENSKMAG00000007317CPSF39986.047ENSORLG00015011017cpsf39986.047Oryzias_latipes_hsok
ENSKMAG00000007317CPSF39986.337ENSOMEG00000010647cpsf39586.337Oryzias_melastigma
ENSKMAG00000007317CPSF39877.500ENSOGAG00000001680CPSF39977.500Otolemur_garnettii
ENSKMAG00000007317CPSF39887.794ENSOARG00000015073CPSF39987.794Ovis_aries
ENSKMAG00000007317CPSF39887.647ENSPPAG00000042457CPSF39197.849Pan_paniscus
ENSKMAG00000007317CPSF39887.794ENSPPRG00000016790CPSF39987.794Panthera_pardus
ENSKMAG00000007317CPSF39887.923ENSPTIG00000003920CPSF39987.923Panthera_tigris_altaica
ENSKMAG00000007317CPSF39887.647ENSPTRG00000011638CPSF39197.849Pan_troglodytes
ENSKMAG00000007317CPSF39887.500ENSPANG00000016798CPSF39495.000Papio_anubis
ENSKMAG00000007317CPSF310090.870ENSPKIG00000023646cpsf310090.870Paramormyrops_kingsleyae
ENSKMAG00000007317CPSF39886.931ENSPSIG00000016144CPSF39986.931Pelodiscus_sinensis
ENSKMAG00000007317CPSF38287.478ENSPMGG00000006141-9980.573Periophthalmus_magnuspinnatus
ENSKMAG00000007317CPSF35989.630ENSPMGG00000015311CPSF310089.630Periophthalmus_magnuspinnatus
ENSKMAG00000007317CPSF39887.941ENSPEMG00000017668Cpsf39987.941Peromyscus_maniculatus_bairdii
ENSKMAG00000007317CPSF37989.725ENSPMAG00000004841cpsf310089.725Petromyzon_marinus
ENSKMAG00000007317CPSF39687.838ENSPCIG00000009823CPSF39888.190Phascolarctos_cinereus
ENSKMAG00000007317CPSF310085.942ENSPFOG00000015922cpsf310085.942Poecilia_formosa
ENSKMAG00000007317CPSF310095.217ENSPFOG00000010418-10095.217Poecilia_formosa
ENSKMAG00000007317CPSF35993.333ENSPLAG00000021300-10093.333Poecilia_latipinna
ENSKMAG00000007317CPSF310085.942ENSPLAG00000000882cpsf310085.942Poecilia_latipinna
ENSKMAG00000007317CPSF310086.087ENSPMEG00000018309cpsf310086.087Poecilia_mexicana
ENSKMAG00000007317CPSF310087.971ENSPREG00000004482CPSF310087.971Poecilia_reticulata
ENSKMAG00000007317CPSF39184.102ENSPREG00000014875cpsf310078.116Poecilia_reticulata
ENSKMAG00000007317CPSF39883.382ENSPPYG00000012666CPSF39983.382Pongo_abelii
ENSKMAG00000007317CPSF38465.537ENSPCAG00000015042CPSF38965.537Procavia_capensis
ENSKMAG00000007317CPSF38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSKMAG00000007317CPSF39887.629ENSPVAG00000005324CPSF39987.629Pteropus_vampyrus
ENSKMAG00000007317CPSF38597.048ENSPNYG00000021047CPSF39189.037Pundamilia_nyererei
ENSKMAG00000007317CPSF39987.645ENSPNYG00000004405cpsf39987.645Pundamilia_nyererei
ENSKMAG00000007317CPSF310089.710ENSPNAG00000023060cpsf310089.710Pygocentrus_nattereri
ENSKMAG00000007317CPSF39986.931ENSRNOG00000052418Cpsf39986.931Rattus_norvegicus
ENSKMAG00000007317CPSF39882.647ENSRBIG00000041615CPSF39983.591Rhinopithecus_bieti
ENSKMAG00000007317CPSF39887.647ENSRROG00000033792CPSF39987.647Rhinopithecus_roxellana
ENSKMAG00000007317CPSF38443.333YLR277CYSH18543.333Saccharomyces_cerevisiae
ENSKMAG00000007317CPSF39684.030ENSSBOG00000027263CPSF39784.030Saimiri_boliviensis_boliviensis
ENSKMAG00000007317CPSF39887.794ENSSHAG00000007024CPSF39987.794Sarcophilus_harrisii
ENSKMAG00000007317CPSF310090.580ENSSFOG00015002108cpsf310090.580Scleropages_formosus
ENSKMAG00000007317CPSF39593.455ENSSMAG00000020534CPSF39793.455Scophthalmus_maximus
ENSKMAG00000007317CPSF310096.957ENSSDUG00000018498CPSF310096.957Seriola_dumerili
ENSKMAG00000007317CPSF39987.645ENSSDUG00000002828cpsf39787.645Seriola_dumerili
ENSKMAG00000007317CPSF310096.957ENSSLDG00000005234CPSF310096.957Seriola_lalandi_dorsalis
ENSKMAG00000007317CPSF39987.791ENSSLDG00000008469cpsf39787.791Seriola_lalandi_dorsalis
ENSKMAG00000007317CPSF38983.992ENSSARG00000005186CPSF39083.992Sorex_araneus
ENSKMAG00000007317CPSF39685.373ENSSPUG00000015525CPSF39785.373Sphenodon_punctatus
ENSKMAG00000007317CPSF310097.971ENSSPAG00000002906CPSF310097.971Stegastes_partitus
ENSKMAG00000007317CPSF39988.227ENSSPAG00000018579cpsf39988.227Stegastes_partitus
ENSKMAG00000007317CPSF39887.794ENSSSCG00000020799CPSF39987.794Sus_scrofa
ENSKMAG00000007317CPSF39987.262ENSTGUG00000013016CPSF39987.262Taeniopygia_guttata
ENSKMAG00000007317CPSF35979.557ENSTRUG00000013905CPSF310079.557Takifugu_rubripes
ENSKMAG00000007317CPSF39986.773ENSTRUG00000007030cpsf39886.773Takifugu_rubripes
ENSKMAG00000007317CPSF38491.713ENSTBEG00000002707CPSF38491.713Tupaia_belangeri
ENSKMAG00000007317CPSF38674.696ENSTTRG00000000861CPSF38774.696Tursiops_truncatus
ENSKMAG00000007317CPSF39588.262ENSUAMG00000007535CPSF39488.262Ursus_americanus
ENSKMAG00000007317CPSF39387.307ENSUMAG00000003676CPSF39492.473Ursus_maritimus
ENSKMAG00000007317CPSF39287.539ENSVPAG00000008041CPSF310087.539Vicugna_pacos
ENSKMAG00000007317CPSF39887.794ENSVVUG00000002194CPSF39987.794Vulpes_vulpes
ENSKMAG00000007317CPSF39985.922ENSXETG00000008263cpsf39985.922Xenopus_tropicalis
ENSKMAG00000007317CPSF35492.473ENSXCOG00000000957-8792.473Xiphophorus_couchianus
ENSKMAG00000007317CPSF310086.232ENSXCOG00000019695cpsf310086.232Xiphophorus_couchianus
ENSKMAG00000007317CPSF310095.507ENSXMAG00000027291CPSF310095.507Xiphophorus_maculatus
ENSKMAG00000007317CPSF310086.087ENSXMAG00000009784cpsf310086.087Xiphophorus_maculatus

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