EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000007399 (Gene tree)
Gene ID: 108240035
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 35763 bases
Position: chrLWHD01000070.1:1589637-1625399
Accession: 108240035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000009902	RNA_pol_Rpb1_5	PF04998.17	1.4e-99	1	1
ENSKMAP00000009902	RNA_pol_Rpb1_4	PF05000.17	1.2e-21	1	1
ENSKMAP00000009902	RNA_pol_Rpb1_2	PF00623.20	1.6e-68	1	1
ENSKMAP00000009902	RNA_pol_Rpb1_3	PF04983.18	1.5e-37	1	1
ENSKMAP00000009902	RNA_pol_Rpb1_1	PF04997.12	2.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000010061	-	5989	XM_017423131	ENSKMAP00000009902	1678 (aa)	XP_017278620	UPI0007F8E539

Gene Model

Click here to download ENSKMAG00000007399's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000007399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000007399	polr1a	83	30.000	ENSKMAG00000016343	polr2a	73	30.000
ENSKMAG00000007399	polr1a	70	32.484	ENSKMAG00000015290	polr3a	78	32.826

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000007399	polr1a	100	65.316	ENSG00000068654	POLR1A	100	65.679	Homo_sapiens
ENSKMAG00000007399	polr1a	69	87.212	ENSAPOG00000017945	polr1a	99	87.212	Acanthochromis_polyacanthus
ENSKMAG00000007399	polr1a	100	65.641	ENSAMEG00000005807	POLR1A	100	69.089	Ailuropoda_melanoleuca
ENSKMAG00000007399	polr1a	100	80.751	ENSACIG00000022147	polr1a	100	81.049	Amphilophus_citrinellus
ENSKMAG00000007399	polr1a	100	86.095	ENSAOCG00000017336	polr1a	100	87.500	Amphiprion_ocellaris
ENSKMAG00000007399	polr1a	100	86.036	ENSAPEG00000016105	polr1a	100	86.391	Amphiprion_percula
ENSKMAG00000007399	polr1a	100	86.237	ENSATEG00000016773	polr1a	100	86.237	Anabas_testudineus
ENSKMAG00000007399	polr1a	85	66.463	ENSAPLG00000013871	POLR1A	99	67.579	Anas_platyrhynchos
ENSKMAG00000007399	polr1a	99	64.503	ENSACAG00000012141	POLR1A	99	64.503	Anolis_carolinensis
ENSKMAG00000007399	polr1a	100	65.253	ENSANAG00000033927	POLR1A	100	65.601	Aotus_nancymaae
ENSKMAG00000007399	polr1a	100	79.022	ENSACLG00000020541	polr1a	100	79.022	Astatotilapia_calliptera
ENSKMAG00000007399	polr1a	100	65.313	ENSBTAG00000006481	POLR1A	100	65.719	Bos_taurus
ENSKMAG00000007399	polr1a	99	38.835	WBGene00012999	rpoa-1	98	38.892	Caenorhabditis_elegans
ENSKMAG00000007399	polr1a	100	65.331	ENSCJAG00000019547	POLR1A	100	65.679	Callithrix_jacchus
ENSKMAG00000007399	polr1a	100	65.794	ENSCAFG00000007613	POLR1A	100	65.794	Canis_familiaris
ENSKMAG00000007399	polr1a	100	65.603	ENSCAFG00020014752	POLR1A	100	65.662	Canis_lupus_dingo
ENSKMAG00000007399	polr1a	100	65.773	ENSCHIG00000018204	POLR1A	100	65.773	Capra_hircus
ENSKMAG00000007399	polr1a	100	64.716	ENSTSYG00000002761	POLR1A	100	65.253	Carlito_syrichta
ENSKMAG00000007399	polr1a	97	62.349	ENSCAPG00000010132	POLR1A	99	62.831	Cavia_aperea
ENSKMAG00000007399	polr1a	100	65.268	ENSCPOG00000012350	POLR1A	100	65.734	Cavia_porcellus
ENSKMAG00000007399	polr1a	100	65.563	ENSCCAG00000019839	POLR1A	100	66.028	Cebus_capucinus
ENSKMAG00000007399	polr1a	100	66.086	ENSCATG00000029786	POLR1A	100	66.260	Cercocebus_atys
ENSKMAG00000007399	polr1a	100	64.505	ENSCLAG00000005187	POLR1A	100	65.369	Chinchilla_lanigera
ENSKMAG00000007399	polr1a	100	65.316	ENSCSAG00000016251	POLR1A	100	66.086	Chlorocebus_sabaeus
ENSKMAG00000007399	polr1a	99	66.997	ENSCPBG00000001115	POLR1A	99	67.351	Chrysemys_picta_bellii
ENSKMAG00000007399	polr1a	99	47.649	ENSCSAVG00000007184	-	99	48.639	Ciona_savignyi
ENSKMAG00000007399	polr1a	100	63.182	ENSCANG00000031785	POLR1A	100	63.473	Colobus_angolensis_palliatus
ENSKMAG00000007399	polr1a	100	59.268	ENSCGRG00001006651	Polr1a	100	59.640	Cricetulus_griseus_chok1gshd
ENSKMAG00000007399	polr1a	60	63.486	ENSCGRG00000010834	Polr1a	100	64.105	Cricetulus_griseus_crigri
ENSKMAG00000007399	polr1a	100	77.192	ENSCSEG00000020190	polr1a	100	77.310	Cynoglossus_semilaevis
ENSKMAG00000007399	polr1a	100	83.471	ENSCVAG00000020941	polr1a	100	83.617	Cyprinodon_variegatus
ENSKMAG00000007399	polr1a	100	71.857	ENSDARG00000098375	polr1a	100	71.915	Danio_rerio
ENSKMAG00000007399	polr1a	100	62.877	ENSDNOG00000010829	POLR1A	100	62.914	Dasypus_novemcinctus
ENSKMAG00000007399	polr1a	100	64.812	ENSDORG00000008298	Polr1a	100	64.904	Dipodomys_ordii
ENSKMAG00000007399	polr1a	80	45.058	FBgn0019938	RpI1	99	43.861	Drosophila_melanogaster
ENSKMAG00000007399	polr1a	71	90.625	ENSETEG00000000412	-	71	90.625	Echinops_telfairi
ENSKMAG00000007399	polr1a	89	47.600	ENSEBUG00000005667	-	99	48.287	Eptatretus_burgeri
ENSKMAG00000007399	polr1a	100	65.623	ENSEASG00005001625	POLR1A	100	65.815	Equus_asinus_asinus
ENSKMAG00000007399	polr1a	100	65.739	ENSECAG00000010092	POLR1A	99	69.854	Equus_caballus
ENSKMAG00000007399	polr1a	100	65.739	ENSECAG00000030510	-	99	69.854	Equus_caballus
ENSKMAG00000007399	polr1a	100	65.739	ENSECAG00000036306	-	99	69.854	Equus_caballus
ENSKMAG00000007399	polr1a	85	76.280	ENSEEUG00000000676	POLR1A	85	76.280	Erinaceus_europaeus
ENSKMAG00000007399	polr1a	100	74.254	ENSELUG00000012769	polr1a	99	74.299	Esox_lucius
ENSKMAG00000007399	polr1a	100	65.116	ENSFCAG00000008966	POLR1A	100	65.465	Felis_catus
ENSKMAG00000007399	polr1a	99	65.959	ENSFALG00000010082	POLR1A	99	66.077	Ficedula_albicollis
ENSKMAG00000007399	polr1a	100	65.114	ENSFDAG00000013726	POLR1A	100	65.385	Fukomys_damarensis
ENSKMAG00000007399	polr1a	100	80.178	ENSFHEG00000005996	polr1a	100	80.355	Fundulus_heteroclitus
ENSKMAG00000007399	polr1a	100	69.249	ENSGMOG00000002230	polr1a	100	69.643	Gadus_morhua
ENSKMAG00000007399	polr1a	89	63.613	ENSGALG00000038160	-	98	63.801	Gallus_gallus
ENSKMAG00000007399	polr1a	100	82.537	ENSGAFG00000015266	polr1a	100	82.360	Gambusia_affinis
ENSKMAG00000007399	polr1a	100	79.572	ENSGACG00000018791	polr1a	100	79.572	Gasterosteus_aculeatus
ENSKMAG00000007399	polr1a	89	67.543	ENSGAGG00000004984	-	99	68.095	Gopherus_agassizii
ENSKMAG00000007399	polr1a	100	65.373	ENSGGOG00000001788	POLR1A	100	65.738	Gorilla_gorilla
ENSKMAG00000007399	polr1a	90	79.577	ENSHBUG00000020021	polr1a	100	80.351	Haplochromis_burtoni
ENSKMAG00000007399	polr1a	100	65.268	ENSHGLG00000006334	POLR1A	100	65.793	Heterocephalus_glaber_female
ENSKMAG00000007399	polr1a	100	65.078	ENSHGLG00100006614	POLR1A	100	65.601	Heterocephalus_glaber_male
ENSKMAG00000007399	polr1a	100	76.345	ENSHCOG00000003345	polr1a	100	76.582	Hippocampus_comes
ENSKMAG00000007399	polr1a	100	72.190	ENSIPUG00000013174	polr1a	100	72.418	Ictalurus_punctatus
ENSKMAG00000007399	polr1a	100	63.858	ENSSTOG00000012580	POLR1A	100	64.634	Ictidomys_tridecemlineatus
ENSKMAG00000007399	polr1a	100	65.329	ENSJJAG00000013113	Polr1a	100	65.678	Jaculus_jaculus
ENSKMAG00000007399	polr1a	95	85.735	ENSLBEG00000015401	polr1a	99	85.735	Labrus_bergylta
ENSKMAG00000007399	polr1a	53	70.044	ENSLACG00000003218	polr1a	100	70.044	Latimeria_chalumnae
ENSKMAG00000007399	polr1a	100	70.598	ENSLOCG00000010881	polr1a	100	70.804	Lepisosteus_oculatus
ENSKMAG00000007399	polr1a	100	65.174	ENSLAFG00000014948	POLR1A	100	65.275	Loxodonta_africana
ENSKMAG00000007399	polr1a	100	65.563	ENSMFAG00000046097	POLR1A	100	66.144	Macaca_fascicularis
ENSKMAG00000007399	polr1a	100	65.447	ENSMMUG00000015815	POLR1A	100	66.028	Macaca_mulatta
ENSKMAG00000007399	polr1a	100	65.563	ENSMNEG00000043313	POLR1A	100	66.144	Macaca_nemestrina
ENSKMAG00000007399	polr1a	100	65.313	ENSMLEG00000042428	POLR1A	100	65.835	Mandrillus_leucophaeus
ENSKMAG00000007399	polr1a	100	84.866	ENSMAMG00000016565	polr1a	100	84.866	Mastacembelus_armatus
ENSKMAG00000007399	polr1a	100	85.130	ENSMZEG00005004915	polr1a	100	85.130	Maylandia_zebra
ENSKMAG00000007399	polr1a	99	63.219	ENSMGAG00000013111	POLR1A	99	63.351	Meleagris_gallopavo
ENSKMAG00000007399	polr1a	91	64.635	ENSMAUG00000008497	Polr1a	99	65.019	Mesocricetus_auratus
ENSKMAG00000007399	polr1a	100	64.910	ENSMICG00000000757	POLR1A	100	65.215	Microcebus_murinus
ENSKMAG00000007399	polr1a	100	65.058	ENSMOCG00000000122	Polr1a	100	65.505	Microtus_ochrogaster
ENSKMAG00000007399	polr1a	100	80.331	ENSMMOG00000010216	polr1a	100	80.567	Mola_mola
ENSKMAG00000007399	polr1a	100	62.493	ENSMODG00000009335	POLR1A	100	62.147	Monodelphis_domestica
ENSKMAG00000007399	polr1a	100	84.438	ENSMALG00000013363	polr1a	100	84.675	Monopterus_albus
ENSKMAG00000007399	polr1a	100	64.651	MGP_CAROLIEiJ_G0028494	Polr1a	100	65.023	Mus_caroli
ENSKMAG00000007399	polr1a	100	64.107	ENSMUSG00000049553	Polr1a	100	64.481	Mus_musculus
ENSKMAG00000007399	polr1a	100	64.750	MGP_PahariEiJ_G0022230	Polr1a	100	65.099	Mus_pahari
ENSKMAG00000007399	polr1a	100	63.056	MGP_SPRETEiJ_G0029499	Polr1a	100	63.512	Mus_spretus
ENSKMAG00000007399	polr1a	100	65.814	ENSMPUG00000009135	POLR1A	100	66.163	Mustela_putorius_furo
ENSKMAG00000007399	polr1a	100	65.260	ENSMLUG00000015723	POLR1A	100	65.780	Myotis_lucifugus
ENSKMAG00000007399	polr1a	100	64.730	ENSNGAG00000017907	Polr1a	100	65.351	Nannospalax_galili
ENSKMAG00000007399	polr1a	100	84.944	ENSNBRG00000000519	polr1a	100	85.130	Neolamprologus_brichardi
ENSKMAG00000007399	polr1a	100	63.573	ENSNLEG00000002264	POLR1A	100	64.046	Nomascus_leucogenys
ENSKMAG00000007399	polr1a	75	83.465	ENSMEUG00000011665	-	75	83.465	Notamacropus_eugenii
ENSKMAG00000007399	polr1a	99	60.568	ENSOPRG00000008269	POLR1A	100	60.746	Ochotona_princeps
ENSKMAG00000007399	polr1a	100	65.096	ENSODEG00000003542	POLR1A	100	65.445	Octodon_degus
ENSKMAG00000007399	polr1a	100	84.747	ENSONIG00000015895	polr1a	100	84.747	Oreochromis_niloticus
ENSKMAG00000007399	polr1a	100	65.559	ENSOCUG00000010138	POLR1A	100	65.967	Oryctolagus_cuniculus
ENSKMAG00000007399	polr1a	100	83.600	ENSORLG00000008753	polr1a	99	83.600	Oryzias_latipes
ENSKMAG00000007399	polr1a	100	80.237	ENSORLG00020020726	polr1a	99	80.415	Oryzias_latipes_hni
ENSKMAG00000007399	polr1a	95	88.298	ENSORLG00015016071	polr1a	98	88.298	Oryzias_latipes_hsok
ENSKMAG00000007399	polr1a	100	65.041	ENSOGAG00000004031	POLR1A	100	65.041	Otolemur_garnettii
ENSKMAG00000007399	polr1a	100	65.429	ENSOARG00000020601	POLR1A	100	65.603	Ovis_aries
ENSKMAG00000007399	polr1a	100	65.258	ENSPPAG00000042450	POLR1A	100	65.621	Pan_paniscus
ENSKMAG00000007399	polr1a	100	65.429	ENSPPRG00000006702	POLR1A	100	65.640	Panthera_pardus
ENSKMAG00000007399	polr1a	100	65.029	ENSPTIG00000018783	POLR1A	100	65.238	Panthera_tigris_altaica
ENSKMAG00000007399	polr1a	100	65.389	ENSPTRG00000012147	POLR1A	100	65.255	Pan_troglodytes
ENSKMAG00000007399	polr1a	100	65.912	ENSPANG00000025908	POLR1A	100	66.086	Papio_anubis
ENSKMAG00000007399	polr1a	100	70.409	ENSPKIG00000005468	polr1a	98	72.917	Paramormyrops_kingsleyae
ENSKMAG00000007399	polr1a	63	66.263	ENSPSIG00000009321	-	99	65.836	Pelodiscus_sinensis
ENSKMAG00000007399	polr1a	55	80.652	ENSPMGG00000009718	polr1a	95	80.652	Periophthalmus_magnuspinnatus
ENSKMAG00000007399	polr1a	100	64.808	ENSPEMG00000022224	Polr1a	100	64.873	Peromyscus_maniculatus_bairdii
ENSKMAG00000007399	polr1a	95	64.207	ENSPCIG00000004222	POLR1A	99	64.421	Phascolarctos_cinereus
ENSKMAG00000007399	polr1a	100	83.706	ENSPFOG00000005025	polr1a	100	84.049	Poecilia_formosa
ENSKMAG00000007399	polr1a	100	84.099	ENSPLAG00000021389	polr1a	100	84.452	Poecilia_latipinna
ENSKMAG00000007399	polr1a	100	81.107	ENSPMEG00000006463	polr1a	100	81.636	Poecilia_mexicana
ENSKMAG00000007399	polr1a	100	83.774	ENSPREG00000002389	polr1a	100	84.127	Poecilia_reticulata
ENSKMAG00000007399	polr1a	100	64.679	ENSPPYG00000012217	POLR1A	100	65.157	Pongo_abelii
ENSKMAG00000007399	polr1a	91	64.852	ENSPCAG00000011582	POLR1A	91	64.852	Procavia_capensis
ENSKMAG00000007399	polr1a	100	64.750	ENSPCOG00000026987	POLR1A	100	65.099	Propithecus_coquereli
ENSKMAG00000007399	polr1a	95	65.512	ENSPVAG00000012674	POLR1A	95	65.733	Pteropus_vampyrus
ENSKMAG00000007399	polr1a	100	85.130	ENSPNYG00000000026	polr1a	100	85.130	Pundamilia_nyererei
ENSKMAG00000007399	polr1a	100	71.913	ENSPNAG00000019223	polr1a	100	72.398	Pygocentrus_nattereri
ENSKMAG00000007399	polr1a	100	64.651	ENSRNOG00000009545	Polr1a	100	65.058	Rattus_norvegicus
ENSKMAG00000007399	polr1a	100	65.142	ENSRBIG00000028335	POLR1A	100	65.912	Rhinopithecus_bieti
ENSKMAG00000007399	polr1a	100	65.142	ENSRROG00000031473	POLR1A	100	65.912	Rhinopithecus_roxellana
ENSKMAG00000007399	polr1a	99	36.851	YOR341W	RPA190	99	36.938	Saccharomyces_cerevisiae
ENSKMAG00000007399	polr1a	100	65.215	ENSSBOG00000030262	POLR1A	100	65.738	Saimiri_boliviensis_boliviensis
ENSKMAG00000007399	polr1a	100	60.634	ENSSHAG00000014739	POLR1A	100	60.507	Sarcophilus_harrisii
ENSKMAG00000007399	polr1a	100	70.307	ENSSFOG00015019716	polr1a	100	70.723	Scleropages_formosus
ENSKMAG00000007399	polr1a	100	83.787	ENSSMAG00000014342	polr1a	100	83.669	Scophthalmus_maximus
ENSKMAG00000007399	polr1a	100	86.584	ENSSDUG00000014631	polr1a	100	86.761	Seriola_dumerili
ENSKMAG00000007399	polr1a	100	82.999	ENSSLDG00000024095	polr1a	100	82.999	Seriola_lalandi_dorsalis
ENSKMAG00000007399	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSKMAG00000007399	polr1a	92	73.846	ENSSPUG00000004215	POLR1A	98	73.846	Sphenodon_punctatus
ENSKMAG00000007399	polr1a	65	87.159	ENSSPAG00000016341	polr1a	95	87.159	Stegastes_partitus
ENSKMAG00000007399	polr1a	83	66.923	ENSSSCG00000008226	POLR1A	99	66.923	Sus_scrofa
ENSKMAG00000007399	polr1a	99	65.483	ENSTGUG00000010704	POLR1A	100	65.346	Taeniopygia_guttata
ENSKMAG00000007399	polr1a	100	78.127	ENSTRUG00000002210	polr1a	99	78.601	Takifugu_rubripes
ENSKMAG00000007399	polr1a	100	72.494	ENSTNIG00000010116	polr1a	100	72.494	Tetraodon_nigroviridis
ENSKMAG00000007399	polr1a	74	81.858	ENSTBEG00000008646	POLR1A	74	81.858	Tupaia_belangeri
ENSKMAG00000007399	polr1a	100	63.409	ENSTTRG00000008597	POLR1A	100	63.816	Tursiops_truncatus
ENSKMAG00000007399	polr1a	69	66.271	ENSUAMG00000012158	-	94	66.864	Ursus_americanus
ENSKMAG00000007399	polr1a	100	65.238	ENSUMAG00000006700	POLR1A	97	68.763	Ursus_maritimus
ENSKMAG00000007399	polr1a	100	65.409	ENSVVUG00000001245	POLR1A	100	65.620	Vulpes_vulpes
ENSKMAG00000007399	polr1a	100	61.721	ENSXETG00000001952	polr1a	100	62.209	Xenopus_tropicalis
ENSKMAG00000007399	polr1a	100	84.038	ENSXMAG00000004032	polr1a	100	84.096	Xiphophorus_maculatus