EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000008111 (Gene tree)
Gene ID: 108234376
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 7078 bases
Position: chrLWHD01000026.1:2349705-2356782
Accession: 108234376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000010813	RRM_1	PF00076.22	6e-63	1	4
ENSKMAP00000010813	RRM_1	PF00076.22	6e-63	2	4
ENSKMAP00000010813	RRM_1	PF00076.22	6e-63	3	4
ENSKMAP00000010813	RRM_1	PF00076.22	6e-63	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000010979	-	3445	XM_017413540	ENSKMAP00000010813	695 (aa)	XP_017269029	UPI0007F8B99B

Gene Model

Click here to download ENSKMAG00000008111's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000008111's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000008111	ncl	50	32.759	ENSKMAG00000000605	pabpc1a	59	31.694
ENSKMAG00000008111	ncl	58	39.713	ENSKMAG00000003154	-	84	40.674
ENSKMAG00000008111	ncl	50	32.759	ENSKMAG00000008049	pabpc1b	63	31.694
ENSKMAG00000008111	ncl	50	33.714	ENSKMAG00000013597	pabpc4	63	31.522

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000008111	ncl	54	85.561	ENSAPOG00000023888	ncl	59	82.857	Acanthochromis_polyacanthus
ENSKMAG00000008111	ncl	65	39.490	ENSAPOG00000014534	-	67	42.746	Acanthochromis_polyacanthus
ENSKMAG00000008111	ncl	74	76.862	ENSACIG00000013234	ncl	62	77.005	Amphilophus_citrinellus
ENSKMAG00000008111	ncl	54	86.631	ENSAOCG00000003133	ncl	60	83.175	Amphiprion_ocellaris
ENSKMAG00000008111	ncl	62	39.062	ENSAOCG00000014792	-	61	41.667	Amphiprion_ocellaris
ENSKMAG00000008111	ncl	62	39.421	ENSAPEG00000013612	-	60	41.927	Amphiprion_percula
ENSKMAG00000008111	ncl	59	82.898	ENSAPEG00000002769	ncl	59	83.848	Amphiprion_percula
ENSKMAG00000008111	ncl	65	82.035	ENSATEG00000013343	ncl	60	85.000	Anabas_testudineus
ENSKMAG00000008111	ncl	69	40.719	ENSATEG00000019862	-	80	44.186	Anabas_testudineus
ENSKMAG00000008111	ncl	53	58.886	ENSAPLG00000012897	-	63	59.151	Anas_platyrhynchos
ENSKMAG00000008111	ncl	59	65.802	ENSAMXG00000001647	ncl	82	70.903	Astyanax_mexicanus
ENSKMAG00000008111	ncl	54	62.730	ENSCPBG00000016444	-	56	61.478	Chrysemys_picta_bellii
ENSKMAG00000008111	ncl	67	82.677	ENSCSEG00000015089	ncl	64	81.235	Cynoglossus_semilaevis
ENSKMAG00000008111	ncl	53	83.019	ENSCVAG00000012600	ncl	61	81.579	Cyprinodon_variegatus
ENSKMAG00000008111	ncl	58	76.699	ENSDARG00000002710	ncl	79	76.699	Danio_rerio
ENSKMAG00000008111	ncl	72	39.575	ENSDNOG00000031611	-	66	43.883	Dasypus_novemcinctus
ENSKMAG00000008111	ncl	55	46.875	ENSDNOG00000040257	-	63	46.354	Dasypus_novemcinctus
ENSKMAG00000008111	ncl	59	72.877	ENSELUG00000006033	ncl	63	74.057	Esox_lucius
ENSKMAG00000008111	ncl	66	47.414	ENSELUG00000022826	-	80	51.743	Esox_lucius
ENSKMAG00000008111	ncl	61	68.075	ENSGMOG00000001341	ncl	66	67.221	Gadus_morhua
ENSKMAG00000008111	ncl	70	71.593	ENSGAFG00000015375	ncl	71	81.862	Gambusia_affinis
ENSKMAG00000008111	ncl	90	71.406	ENSGACG00000008970	ncl	66	78.398	Gasterosteus_aculeatus
ENSKMAG00000008111	ncl	90	49.242	ENSGAGG00000013330	-	56	61.214	Gopherus_agassizii
ENSKMAG00000008111	ncl	53	79.459	ENSHBUG00000006869	ncl	60	77.251	Haplochromis_burtoni
ENSKMAG00000008111	ncl	64	41.290	ENSLBEG00000007915	-	66	43.702	Labrus_bergylta
ENSKMAG00000008111	ncl	59	83.894	ENSLBEG00000019073	ncl	62	84.375	Labrus_bergylta
ENSKMAG00000008111	ncl	53	42.338	ENSLBEG00000014278	-	82	42.896	Labrus_bergylta
ENSKMAG00000008111	ncl	78	58.559	ENSLACG00000009328	ncl	62	64.337	Latimeria_chalumnae
ENSKMAG00000008111	ncl	70	50.704	ENSLACG00000022167	-	79	52.957	Latimeria_chalumnae
ENSKMAG00000008111	ncl	61	66.121	ENSLOCG00000004828	ncl	57	68.160	Lepisosteus_oculatus
ENSKMAG00000008111	ncl	58	41.148	ENSMAMG00000003479	-	69	41.146	Mastacembelus_armatus
ENSKMAG00000008111	ncl	90	70.233	ENSMAMG00000002086	ncl	51	81.710	Mastacembelus_armatus
ENSKMAG00000008111	ncl	53	79.459	ENSMZEG00005017438	ncl	60	77.619	Maylandia_zebra
ENSKMAG00000008111	ncl	52	59.621	ENSMGAG00000008147	-	85	58.967	Meleagris_gallopavo
ENSKMAG00000008111	ncl	53	58.225	ENSMODG00000002470	-	54	58.182	Monodelphis_domestica
ENSKMAG00000008111	ncl	91	74.441	ENSMALG00000014827	ncl	59	81.818	Monopterus_albus
ENSKMAG00000008111	ncl	54	37.209	ENSONIG00000010631	-	97	38.070	Oreochromis_niloticus
ENSKMAG00000008111	ncl	53	79.459	ENSONIG00000012508	ncl	59	77.541	Oreochromis_niloticus
ENSKMAG00000008111	ncl	53	60.471	ENSOANG00000008732	-	60	60.209	Ornithorhynchus_anatinus
ENSKMAG00000008111	ncl	52	86.704	ENSORLG00000007055	ncl	57	84.964	Oryzias_latipes
ENSKMAG00000008111	ncl	60	40.000	ENSORLG00000004645	-	83	40.731	Oryzias_latipes
ENSKMAG00000008111	ncl	61	36.784	ENSORLG00020003497	-	74	40.731	Oryzias_latipes_hni
ENSKMAG00000008111	ncl	59	82.578	ENSORLG00020017943	ncl	71	84.726	Oryzias_latipes_hni
ENSKMAG00000008111	ncl	58	39.024	ENSORLG00015006613	-	77	40.731	Oryzias_latipes_hsok
ENSKMAG00000008111	ncl	59	80.723	ENSORLG00015013815	ncl	88	86.275	Oryzias_latipes_hsok
ENSKMAG00000008111	ncl	54	86.096	ENSOMEG00000020786	ncl	57	83.373	Oryzias_melastigma
ENSKMAG00000008111	ncl	56	39.055	ENSOMEG00000015864	-	81	39.267	Oryzias_melastigma
ENSKMAG00000008111	ncl	60	75.772	ENSPKIG00000002604	ncl	59	75.656	Paramormyrops_kingsleyae
ENSKMAG00000008111	ncl	53	80.456	ENSPMGG00000004709	ncl	82	80.130	Periophthalmus_magnuspinnatus
ENSKMAG00000008111	ncl	64	42.484	ENSPMAG00000003855	ncl	56	42.206	Petromyzon_marinus
ENSKMAG00000008111	ncl	65	78.867	ENSPFOG00000024205	ncl	57	83.095	Poecilia_formosa
ENSKMAG00000008111	ncl	65	78.603	ENSPLAG00000024026	ncl	57	82.100	Poecilia_latipinna
ENSKMAG00000008111	ncl	65	78.603	ENSPMEG00000006000	ncl	73	82.816	Poecilia_mexicana
ENSKMAG00000008111	ncl	53	79.459	ENSPNYG00000020494	ncl	60	77.619	Pundamilia_nyererei
ENSKMAG00000008111	ncl	53	53.704	ENSSHAG00000002702	-	59	53.421	Sarcophilus_harrisii
ENSKMAG00000008111	ncl	56	45.251	ENSSFOG00015013153	-	78	47.727	Scleropages_formosus
ENSKMAG00000008111	ncl	59	81.797	ENSSMAG00000021241	ncl	60	80.615	Scophthalmus_maximus
ENSKMAG00000008111	ncl	58	44.096	ENSSMAG00000007582	-	61	44.357	Scophthalmus_maximus
ENSKMAG00000008111	ncl	72	40.657	ENSSDUG00000010922	-	70	43.229	Seriola_dumerili
ENSKMAG00000008111	ncl	84	69.682	ENSSDUG00000006128	ncl	85	85.294	Seriola_dumerili
ENSKMAG00000008111	ncl	65	81.304	ENSSLDG00000002012	ncl	60	83.971	Seriola_lalandi_dorsalis
ENSKMAG00000008111	ncl	72	38.104	ENSSLDG00000015784	-	65	42.670	Seriola_lalandi_dorsalis
ENSKMAG00000008111	ncl	54	58.543	ENSSPUG00000008244	-	58	58.115	Sphenodon_punctatus
ENSKMAG00000008111	ncl	50	84.043	ENSSPAG00000002637	ncl	82	84.043	Stegastes_partitus
ENSKMAG00000008111	ncl	59	42.180	ENSSPAG00000001859	-	61	42.971	Stegastes_partitus
ENSKMAG00000008111	ncl	59	76.540	ENSTRUG00000008185	ncl	62	79.147	Takifugu_rubripes
ENSKMAG00000008111	ncl	51	80.447	ENSTNIG00000012186	ncl	69	75.418	Tetraodon_nigroviridis
ENSKMAG00000008111	ncl	54	60.263	ENSXETG00000009517	ncl	54	60.477	Xenopus_tropicalis
ENSKMAG00000008111	ncl	53	40.789	ENSXCOG00000007369	-	89	40.789	Xiphophorus_couchianus
ENSKMAG00000008111	ncl	56	50.448	ENSXCOG00000003524	ncl	88	65.508	Xiphophorus_couchianus
ENSKMAG00000008111	ncl	54	84.492	ENSXMAG00000005914	ncl	72	82.938	Xiphophorus_maculatus