EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000008708 (Gene tree)
Gene ID: 108242809
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 5877 bases
Position: chrLWHD01000001.1:9169154-9175030
Accession: 108242809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000011568	PPR	PF01535.20	2.9e-16	1	2
ENSKMAP00000011568	PPR	PF01535.20	2.9e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000011746	-	3637	XM_017427935	ENSKMAP00000011568	702 (aa)	XP_017283424	UPI0007F8E91A

Gene Model

Click here to download ENSKMAG00000008708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000008708's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000008708	ptcd1	80	47.377	ENSG00000248919	ATP5MF-PTCD1	78	47.466	Homo_sapiens
ENSKMAG00000008708	ptcd1	80	47.377	ENSG00000106246	PTCD1	83	47.466	Homo_sapiens
ENSKMAG00000008708	ptcd1	88	64.613	ENSAPOG00000010679	ptcd1	96	63.981	Acanthochromis_polyacanthus
ENSKMAG00000008708	ptcd1	82	49.161	ENSAMEG00000006224	-	78	48.993	Ailuropoda_melanoleuca
ENSKMAG00000008708	ptcd1	94	69.565	ENSACIG00000017861	ptcd1	95	69.565	Amphilophus_citrinellus
ENSKMAG00000008708	ptcd1	83	68.243	ENSAOCG00000022617	ptcd1	88	67.736	Amphiprion_ocellaris
ENSKMAG00000008708	ptcd1	95	66.617	ENSAOCG00000020741	-	94	66.172	Amphiprion_ocellaris
ENSKMAG00000008708	ptcd1	95	66.617	ENSAPEG00000022632	ptcd1	94	66.172	Amphiprion_percula
ENSKMAG00000008708	ptcd1	96	68.135	ENSATEG00000007016	ptcd1	95	68.382	Anabas_testudineus
ENSKMAG00000008708	ptcd1	80	49.225	ENSAPLG00000006862	-	93	47.927	Anas_platyrhynchos
ENSKMAG00000008708	ptcd1	80	48.211	ENSACAG00000012871	-	77	47.530	Anolis_carolinensis
ENSKMAG00000008708	ptcd1	80	47.099	ENSANAG00000035790	-	85	47.189	Aotus_nancymaae
ENSKMAG00000008708	ptcd1	99	67.280	ENSACLG00000002824	ptcd1	99	67.280	Astatotilapia_calliptera
ENSKMAG00000008708	ptcd1	81	50.575	ENSAMXG00000037292	ptcd1	85	50.244	Astyanax_mexicanus
ENSKMAG00000008708	ptcd1	90	45.946	ENSBTAG00000020440	-	81	45.946	Bos_taurus
ENSKMAG00000008708	ptcd1	80	47.692	ENSCJAG00000015815	-	83	47.782	Callithrix_jacchus
ENSKMAG00000008708	ptcd1	85	47.267	ENSCAFG00000015055	-	82	47.106	Canis_familiaris
ENSKMAG00000008708	ptcd1	85	47.428	ENSCAFG00020014480	-	82	47.267	Canis_lupus_dingo
ENSKMAG00000008708	ptcd1	83	48.430	ENSCHIG00000027000	-	85	48.430	Capra_hircus
ENSKMAG00000008708	ptcd1	80	47.878	ENSTSYG00000029495	-	84	47.819	Carlito_syrichta
ENSKMAG00000008708	ptcd1	80	48.142	ENSCAPG00000014660	-	90	47.993	Cavia_aperea
ENSKMAG00000008708	ptcd1	80	48.818	ENSCPOG00000001780	-	84	48.662	Cavia_porcellus
ENSKMAG00000008708	ptcd1	80	48.054	ENSCCAG00000034025	-	83	48.142	Cebus_capucinus
ENSKMAG00000008708	ptcd1	80	49.233	ENSCATG00000040859	-	83	49.320	Cercocebus_atys
ENSKMAG00000008708	ptcd1	80	49.317	ENSCLAG00000006354	-	84	49.155	Chinchilla_lanigera
ENSKMAG00000008708	ptcd1	77	47.764	ENSCSAG00000017794	-	83	47.611	Chlorocebus_sabaeus
ENSKMAG00000008708	ptcd1	85	46.059	ENSCPBG00000020866	-	86	45.988	Chrysemys_picta_bellii
ENSKMAG00000008708	ptcd1	78	30.397	ENSCING00000007717	-	93	30.601	Ciona_intestinalis
ENSKMAG00000008708	ptcd1	82	47.674	ENSCANG00000023441	-	84	47.833	Colobus_angolensis_palliatus
ENSKMAG00000008708	ptcd1	87	47.077	ENSCGRG00001023686	Ptcd1	89	47.077	Cricetulus_griseus_chok1gshd
ENSKMAG00000008708	ptcd1	87	47.077	ENSCGRG00000015031	Ptcd1	89	47.077	Cricetulus_griseus_crigri
ENSKMAG00000008708	ptcd1	98	59.857	ENSCSEG00000002378	ptcd1	99	59.857	Cynoglossus_semilaevis
ENSKMAG00000008708	ptcd1	99	69.154	ENSCVAG00000015826	ptcd1	97	69.154	Cyprinodon_variegatus
ENSKMAG00000008708	ptcd1	93	68.349	ENSCVAG00000003621	ptcd1	96	68.349	Cyprinodon_variegatus
ENSKMAG00000008708	ptcd1	84	51.424	ENSDARG00000076176	ptcd1	90	50.955	Danio_rerio
ENSKMAG00000008708	ptcd1	81	48.562	ENSDNOG00000009957	-	85	47.855	Dasypus_novemcinctus
ENSKMAG00000008708	ptcd1	82	47.395	ENSDORG00000000740	Ptcd1	87	47.030	Dipodomys_ordii
ENSKMAG00000008708	ptcd1	80	38.547	ENSEBUG00000014515	ptcd1	93	37.794	Eptatretus_burgeri
ENSKMAG00000008708	ptcd1	88	47.123	ENSEASG00005002480	-	90	47.123	Equus_asinus_asinus
ENSKMAG00000008708	ptcd1	88	47.352	ENSECAG00000016617	-	90	47.352	Equus_caballus
ENSKMAG00000008708	ptcd1	87	56.968	ENSELUG00000016517	ptcd1	87	56.355	Esox_lucius
ENSKMAG00000008708	ptcd1	89	46.271	ENSFCAG00000015069	-	92	46.423	Felis_catus
ENSKMAG00000008708	ptcd1	80	47.185	ENSFALG00000013803	-	90	45.386	Ficedula_albicollis
ENSKMAG00000008708	ptcd1	80	49.063	ENSFDAG00000006393	-	84	48.161	Fukomys_damarensis
ENSKMAG00000008708	ptcd1	78	73.882	ENSFHEG00000012491	ptcd1	97	73.882	Fundulus_heteroclitus
ENSKMAG00000008708	ptcd1	88	60.572	ENSGMOG00000007639	ptcd1	99	60.254	Gadus_morhua
ENSKMAG00000008708	ptcd1	80	47.746	ENSGALG00000004711	-	94	45.322	Gallus_gallus
ENSKMAG00000008708	ptcd1	92	71.231	ENSGAFG00000013175	ptcd1	93	71.077	Gambusia_affinis
ENSKMAG00000008708	ptcd1	90	68.331	ENSGACG00000016607	ptcd1	97	69.206	Gasterosteus_aculeatus
ENSKMAG00000008708	ptcd1	77	47.163	ENSGAGG00000021832	-	84	47.163	Gopherus_agassizii
ENSKMAG00000008708	ptcd1	80	48.464	ENSGGOG00000015123	-	83	48.211	Gorilla_gorilla
ENSKMAG00000008708	ptcd1	99	67.044	ENSHBUG00000018275	ptcd1	99	67.044	Haplochromis_burtoni
ENSKMAG00000008708	ptcd1	80	49.069	ENSHGLG00000017621	-	84	48.667	Heterocephalus_glaber_female
ENSKMAG00000008708	ptcd1	80	49.069	ENSHGLG00100007218	-	84	48.667	Heterocephalus_glaber_male
ENSKMAG00000008708	ptcd1	98	56.105	ENSHCOG00000010784	ptcd1	98	56.831	Hippocampus_comes
ENSKMAG00000008708	ptcd1	83	49.178	ENSSTOG00000001682	-	86	49.178	Ictidomys_tridecemlineatus
ENSKMAG00000008708	ptcd1	81	49.239	ENSJJAG00000000319	Ptcd1	84	48.983	Jaculus_jaculus
ENSKMAG00000008708	ptcd1	98	63.687	ENSLBEG00000008061	ptcd1	98	63.750	Labrus_bergylta
ENSKMAG00000008708	ptcd1	81	48.727	ENSLACG00000011172	ptcd1	82	48.727	Latimeria_chalumnae
ENSKMAG00000008708	ptcd1	81	51.471	ENSLOCG00000004833	ptcd1	91	50.423	Lepisosteus_oculatus
ENSKMAG00000008708	ptcd1	83	46.906	ENSLAFG00000002588	-	86	46.906	Loxodonta_africana
ENSKMAG00000008708	ptcd1	80	48.480	ENSMFAG00000041324	-	83	48.567	Macaca_fascicularis
ENSKMAG00000008708	ptcd1	80	48.311	ENSMMUG00000030408	-	83	48.398	Macaca_mulatta
ENSKMAG00000008708	ptcd1	80	49.233	ENSMNEG00000043786	-	83	49.320	Macaca_nemestrina
ENSKMAG00000008708	ptcd1	80	36.317	ENSMLEG00000031179	-	81	37.801	Mandrillus_leucophaeus
ENSKMAG00000008708	ptcd1	100	64.665	ENSMAMG00000007623	ptcd1	99	64.525	Mastacembelus_armatus
ENSKMAG00000008708	ptcd1	98	67.719	ENSMZEG00005012722	ptcd1	98	67.719	Maylandia_zebra
ENSKMAG00000008708	ptcd1	79	48.382	ENSMGAG00000004211	-	76	47.973	Meleagris_gallopavo
ENSKMAG00000008708	ptcd1	81	46.050	ENSMICG00000017428	-	88	45.527	Microcebus_murinus
ENSKMAG00000008708	ptcd1	98	66.760	ENSMMOG00000020243	ptcd1	95	70.759	Mola_mola
ENSKMAG00000008708	ptcd1	83	45.367	ENSMODG00000001350	-	83	44.888	Monodelphis_domestica
ENSKMAG00000008708	ptcd1	95	68.429	ENSMALG00000018442	ptcd1	94	68.622	Monopterus_albus
ENSKMAG00000008708	ptcd1	95	45.415	MGP_CAROLIEiJ_G0028011	Ptcd1	99	45.415	Mus_caroli
ENSKMAG00000008708	ptcd1	93	44.868	ENSMUSG00000029624	Ptcd1	96	45.015	Mus_musculus
ENSKMAG00000008708	ptcd1	93	46.074	MGP_PahariEiJ_G0024580	Ptcd1	96	46.074	Mus_pahari
ENSKMAG00000008708	ptcd1	95	44.476	MGP_SPRETEiJ_G0029012	Ptcd1	99	44.699	Mus_spretus
ENSKMAG00000008708	ptcd1	82	48.908	ENSMPUG00000016518	-	88	47.833	Mustela_putorius_furo
ENSKMAG00000008708	ptcd1	83	48.627	ENSMLUG00000010994	-	80	48.465	Myotis_lucifugus
ENSKMAG00000008708	ptcd1	97	65.368	ENSNBRG00000010079	ptcd1	96	67.879	Neolamprologus_brichardi
ENSKMAG00000008708	ptcd1	71	47.318	ENSNLEG00000011060	-	87	47.318	Nomascus_leucogenys
ENSKMAG00000008708	ptcd1	83	45.691	ENSMEUG00000006930	-	86	45.203	Notamacropus_eugenii
ENSKMAG00000008708	ptcd1	71	58.871	ENSOPRG00000013647	-	74	59.677	Ochotona_princeps
ENSKMAG00000008708	ptcd1	85	69.333	ENSONIG00000003168	ptcd1	100	69.333	Oreochromis_niloticus
ENSKMAG00000008708	ptcd1	77	46.496	ENSOANG00000007728	-	84	44.713	Ornithorhynchus_anatinus
ENSKMAG00000008708	ptcd1	80	48.464	ENSOCUG00000010584	-	84	47.126	Oryctolagus_cuniculus
ENSKMAG00000008708	ptcd1	95	65.237	ENSORLG00000009275	ptcd1	98	65.237	Oryzias_latipes
ENSKMAG00000008708	ptcd1	95	66.074	ENSORLG00020000988	ptcd1	98	65.932	Oryzias_latipes_hni
ENSKMAG00000008708	ptcd1	95	64.593	ENSORLG00015010557	ptcd1	98	64.464	Oryzias_latipes_hsok
ENSKMAG00000008708	ptcd1	96	67.162	ENSOMEG00000020627	ptcd1	99	67.162	Oryzias_melastigma
ENSKMAG00000008708	ptcd1	80	46.429	ENSOGAG00000010877	-	85	46.064	Otolemur_garnettii
ENSKMAG00000008708	ptcd1	83	44.805	ENSOARG00000018676	-	86	44.805	Ovis_aries
ENSKMAG00000008708	ptcd1	80	47.952	ENSPPAG00000036024	-	83	47.700	Pan_paniscus
ENSKMAG00000008708	ptcd1	85	47.544	ENSPPRG00000003478	-	89	47.528	Panthera_pardus
ENSKMAG00000008708	ptcd1	80	48.123	ENSPTRG00000019452	-	83	47.871	Pan_troglodytes
ENSKMAG00000008708	ptcd1	80	48.649	ENSPANG00000016730	-	83	48.735	Papio_anubis
ENSKMAG00000008708	ptcd1	82	51.089	ENSPKIG00000014215	ptcd1	86	50.921	Paramormyrops_kingsleyae
ENSKMAG00000008708	ptcd1	81	47.980	ENSPSIG00000011184	-	98	47.811	Pelodiscus_sinensis
ENSKMAG00000008708	ptcd1	70	42.226	ENSPMAG00000009667	ptcd1	100	42.226	Petromyzon_marinus
ENSKMAG00000008708	ptcd1	81	47.185	ENSPCIG00000024778	-	81	47.020	Phascolarctos_cinereus
ENSKMAG00000008708	ptcd1	94	69.254	ENSPFOG00000004458	ptcd1	94	69.701	Poecilia_formosa
ENSKMAG00000008708	ptcd1	98	68.201	ENSPLAG00000011051	ptcd1	98	68.633	Poecilia_latipinna
ENSKMAG00000008708	ptcd1	94	68.806	ENSPMEG00000020547	ptcd1	94	69.254	Poecilia_mexicana
ENSKMAG00000008708	ptcd1	95	68.358	ENSPREG00000000059	ptcd1	94	68.806	Poecilia_reticulata
ENSKMAG00000008708	ptcd1	82	47.078	ENSPPYG00000017377	-	89	47.236	Pongo_abelii
ENSKMAG00000008708	ptcd1	70	63.025	ENSPCAG00000001852	-	80	61.538	Procavia_capensis
ENSKMAG00000008708	ptcd1	85	46.602	ENSPCOG00000018596	-	87	46.916	Propithecus_coquereli
ENSKMAG00000008708	ptcd1	60	51.572	ENSPVAG00000007529	-	51	64.651	Pteropus_vampyrus
ENSKMAG00000008708	ptcd1	99	66.856	ENSPNYG00000019993	ptcd1	99	66.856	Pundamilia_nyererei
ENSKMAG00000008708	ptcd1	85	51.097	ENSPNAG00000014931	ptcd1	93	51.097	Pygocentrus_nattereri
ENSKMAG00000008708	ptcd1	80	48.464	ENSRNOG00000000987	Ptcd1	93	45.884	Rattus_norvegicus
ENSKMAG00000008708	ptcd1	82	47.098	ENSRBIG00000043393	-	85	47.098	Rhinopithecus_bieti
ENSKMAG00000008708	ptcd1	85	47.276	ENSRROG00000036420	-	88	47.276	Rhinopithecus_roxellana
ENSKMAG00000008708	ptcd1	80	47.885	ENSSBOG00000024114	-	83	46.922	Saimiri_boliviensis_boliviensis
ENSKMAG00000008708	ptcd1	80	48.034	ENSSHAG00000011376	-	88	47.513	Sarcophilus_harrisii
ENSKMAG00000008708	ptcd1	82	52.145	ENSSFOG00015007909	ptcd1	81	51.980	Scleropages_formosus
ENSKMAG00000008708	ptcd1	88	66.294	ENSSMAG00000000218	ptcd1	99	66.294	Scophthalmus_maximus
ENSKMAG00000008708	ptcd1	96	66.092	ENSSDUG00000015671	ptcd1	100	66.092	Seriola_dumerili
ENSKMAG00000008708	ptcd1	92	67.910	ENSSLDG00000014261	ptcd1	96	67.910	Seriola_lalandi_dorsalis
ENSKMAG00000008708	ptcd1	81	45.977	ENSSPUG00000003540	-	81	45.977	Sphenodon_punctatus
ENSKMAG00000008708	ptcd1	99	67.172	ENSSPAG00000011049	ptcd1	99	67.172	Stegastes_partitus
ENSKMAG00000008708	ptcd1	80	48.167	ENSSSCG00000007622	-	88	48.253	Sus_scrofa
ENSKMAG00000008708	ptcd1	80	48.438	ENSTGUG00000007563	-	94	48.616	Taeniopygia_guttata
ENSKMAG00000008708	ptcd1	91	66.003	ENSTRUG00000013471	ptcd1	90	65.850	Takifugu_rubripes
ENSKMAG00000008708	ptcd1	92	62.935	ENSTNIG00000008271	ptcd1	96	62.935	Tetraodon_nigroviridis
ENSKMAG00000008708	ptcd1	81	47.466	ENSTBEG00000011021	-	84	47.466	Tupaia_belangeri
ENSKMAG00000008708	ptcd1	83	47.974	ENSTTRG00000003006	-	86	47.650	Tursiops_truncatus
ENSKMAG00000008708	ptcd1	82	48.490	ENSUAMG00000008049	-	84	48.322	Ursus_americanus
ENSKMAG00000008708	ptcd1	85	47.428	ENSVVUG00000008836	-	88	47.267	Vulpes_vulpes
ENSKMAG00000008708	ptcd1	82	47.492	ENSXETG00000009891	ptcd1	86	47.324	Xenopus_tropicalis
ENSKMAG00000008708	ptcd1	94	70.606	ENSXMAG00000015540	ptcd1	94	70.758	Xiphophorus_maculatus