EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000009462 (Gene tree)
Gene ID: 108242963
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 8824 bases
Position: chrLWHD01000001.1:9774880-9783703
Accession: 108242963
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000012595	RNA_bind	PF08675.11	1.4e-33	1	1
ENSKMAP00000012595	CAF1	PF04857.20	2.9e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000012780	-	3737	XM_017428165	ENSKMAP00000012595	679 (aa)	XP_017283654	UPI0007F9217B

Gene Model

Click here to download ENSKMAG00000009462's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000009462's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000009462	parn	84	74.061	ENSG00000140694	PARN	99	70.732	Homo_sapiens
ENSKMAG00000009462	parn	84	73.220	ENSAMEG00000011208	PARN	83	78.026	Ailuropoda_melanoleuca
ENSKMAG00000009462	parn	87	81.221	ENSACIG00000000619	parn	99	81.221	Amphilophus_citrinellus
ENSKMAG00000009462	parn	100	86.628	ENSAOCG00000003465	parn	100	86.628	Amphiprion_ocellaris
ENSKMAG00000009462	parn	72	91.411	ENSAPEG00000010661	parn	93	91.411	Amphiprion_percula
ENSKMAG00000009462	parn	100	86.111	ENSATEG00000004661	parn	100	86.111	Anabas_testudineus
ENSKMAG00000009462	parn	83	73.621	ENSAPLG00000013914	PARN	90	74.138	Anas_platyrhynchos
ENSKMAG00000009462	parn	83	74.658	ENSACAG00000004973	PARN	89	74.658	Anolis_carolinensis
ENSKMAG00000009462	parn	84	73.891	ENSANAG00000031516	PARN	94	76.271	Aotus_nancymaae
ENSKMAG00000009462	parn	100	86.404	ENSACLG00000004742	parn	100	86.404	Astatotilapia_calliptera
ENSKMAG00000009462	parn	100	72.076	ENSAMXG00000012390	parn	97	75.336	Astyanax_mexicanus
ENSKMAG00000009462	parn	83	70.724	ENSBTAG00000018097	PARN	90	73.423	Bos_taurus
ENSKMAG00000009462	parn	84	73.891	ENSCJAG00000015866	PARN	94	76.271	Callithrix_jacchus
ENSKMAG00000009462	parn	79	77.799	ENSCAFG00000018795	PARN	83	77.799	Canis_familiaris
ENSKMAG00000009462	parn	79	77.985	ENSCAFG00020024126	PARN	83	77.985	Canis_lupus_dingo
ENSKMAG00000009462	parn	83	73.630	ENSCHIG00000018143	PARN	91	73.630	Capra_hircus
ENSKMAG00000009462	parn	69	50.936	ENSCAPG00000007984	PARN	78	50.936	Cavia_aperea
ENSKMAG00000009462	parn	83	73.333	ENSCPOG00000002263	PARN	91	73.333	Cavia_porcellus
ENSKMAG00000009462	parn	84	73.891	ENSCCAG00000030367	PARN	94	76.271	Cebus_capucinus
ENSKMAG00000009462	parn	50	33.793	ENSCATG00000033196	PNLDC1	72	33.793	Cercocebus_atys
ENSKMAG00000009462	parn	79	78.172	ENSCATG00000041368	PARN	95	78.172	Cercocebus_atys
ENSKMAG00000009462	parn	84	73.549	ENSCLAG00000015406	PARN	91	73.549	Chinchilla_lanigera
ENSKMAG00000009462	parn	84	73.891	ENSCSAG00000008142	PARN	95	71.987	Chlorocebus_sabaeus
ENSKMAG00000009462	parn	82	57.439	ENSCHOG00000007014	PARN	91	57.439	Choloepus_hoffmanni
ENSKMAG00000009462	parn	74	73.295	ENSCPBG00000006609	PARN	90	73.295	Chrysemys_picta_bellii
ENSKMAG00000009462	parn	75	42.697	ENSCING00000010142	-	99	42.697	Ciona_intestinalis
ENSKMAG00000009462	parn	84	62.938	ENSCANG00000028849	-	93	76.271	Colobus_angolensis_palliatus
ENSKMAG00000009462	parn	83	73.575	ENSCGRG00001012096	Parn	92	72.945	Cricetulus_griseus_chok1gshd
ENSKMAG00000009462	parn	83	73.575	ENSCGRG00000004939	Parn	92	72.945	Cricetulus_griseus_crigri
ENSKMAG00000009462	parn	100	82.533	ENSCSEG00000002064	parn	100	82.533	Cynoglossus_semilaevis
ENSKMAG00000009462	parn	100	88.824	ENSCVAG00000014848	parn	100	88.824	Cyprinodon_variegatus
ENSKMAG00000009462	parn	100	65.945	ENSDARG00000102634	parn	100	65.945	Danio_rerio
ENSKMAG00000009462	parn	79	78.172	ENSDNOG00000000833	PARN	94	78.172	Dasypus_novemcinctus
ENSKMAG00000009462	parn	62	73.864	ENSETEG00000014828	-	69	73.864	Echinops_telfairi
ENSKMAG00000009462	parn	83	72.945	ENSEASG00005011400	PARN	91	72.945	Equus_asinus_asinus
ENSKMAG00000009462	parn	83	72.774	ENSECAG00000017792	PARN	91	72.774	Equus_caballus
ENSKMAG00000009462	parn	71	63.964	ENSEEUG00000010370	PARN	78	63.964	Erinaceus_europaeus
ENSKMAG00000009462	parn	100	74.311	ENSELUG00000013139	parn	90	74.311	Esox_lucius
ENSKMAG00000009462	parn	79	78.545	ENSFCAG00000044961	PARN	83	78.545	Felis_catus
ENSKMAG00000009462	parn	82	73.529	ENSFALG00000003911	PARN	89	74.048	Ficedula_albicollis
ENSKMAG00000009462	parn	84	72.973	ENSFDAG00000009234	PARN	92	72.973	Fukomys_damarensis
ENSKMAG00000009462	parn	88	82.060	ENSFHEG00000013738	parn	92	93.220	Fundulus_heteroclitus
ENSKMAG00000009462	parn	81	83.607	ENSGMOG00000003231	parn	100	83.607	Gadus_morhua
ENSKMAG00000009462	parn	89	70.253	ENSGALG00000003091	PARN	99	70.570	Gallus_gallus
ENSKMAG00000009462	parn	100	85.965	ENSGAFG00000011061	parn	100	85.965	Gambusia_affinis
ENSKMAG00000009462	parn	100	75.543	ENSGACG00000019501	parn	100	75.832	Gasterosteus_aculeatus
ENSKMAG00000009462	parn	84	74.061	ENSGGOG00000025224	PARN	97	76.271	Gorilla_gorilla
ENSKMAG00000009462	parn	100	87.135	ENSHBUG00000017906	parn	100	87.135	Haplochromis_burtoni
ENSKMAG00000009462	parn	83	73.162	ENSHGLG00000010886	PARN	91	73.162	Heterocephalus_glaber_female
ENSKMAG00000009462	parn	83	73.162	ENSHGLG00100014659	PARN	91	73.162	Heterocephalus_glaber_male
ENSKMAG00000009462	parn	80	81.170	ENSHCOG00000008683	parn	94	81.170	Hippocampus_comes
ENSKMAG00000009462	parn	100	59.971	ENSIPUG00000012401	parn	100	59.885	Ictalurus_punctatus
ENSKMAG00000009462	parn	83	73.621	ENSSTOG00000007519	PARN	91	73.621	Ictidomys_tridecemlineatus
ENSKMAG00000009462	parn	84	72.603	ENSJJAG00000023049	Parn	92	72.603	Jaculus_jaculus
ENSKMAG00000009462	parn	93	86.478	ENSLBEG00000009167	parn	99	86.478	Labrus_bergylta
ENSKMAG00000009462	parn	74	74.603	ENSLACG00000004207	PARN	100	73.585	Latimeria_chalumnae
ENSKMAG00000009462	parn	100	69.020	ENSLOCG00000000715	parn	100	69.044	Lepisosteus_oculatus
ENSKMAG00000009462	parn	83	74.394	ENSLAFG00000015036	PARN	91	74.394	Loxodonta_africana
ENSKMAG00000009462	parn	84	70.990	ENSMFAG00000044852	PARN	94	76.271	Macaca_fascicularis
ENSKMAG00000009462	parn	84	73.891	ENSMMUG00000018849	PARN	94	76.271	Macaca_mulatta
ENSKMAG00000009462	parn	84	73.891	ENSMNEG00000045108	PARN	94	76.271	Macaca_nemestrina
ENSKMAG00000009462	parn	84	73.720	ENSMLEG00000031743	PARN	94	76.271	Mandrillus_leucophaeus
ENSKMAG00000009462	parn	100	86.463	ENSMAMG00000006939	parn	100	86.463	Mastacembelus_armatus
ENSKMAG00000009462	parn	100	86.550	ENSMZEG00005013590	parn	100	86.550	Maylandia_zebra
ENSKMAG00000009462	parn	81	72.775	ENSMGAG00000001004	PARN	89	72.775	Meleagris_gallopavo
ENSKMAG00000009462	parn	83	67.912	ENSMAUG00000008025	Parn	91	67.912	Mesocricetus_auratus
ENSKMAG00000009462	parn	84	73.379	ENSMICG00000016053	PARN	91	74.576	Microcebus_murinus
ENSKMAG00000009462	parn	73	78.586	ENSMOCG00000022211	Parn	100	78.586	Microtus_ochrogaster
ENSKMAG00000009462	parn	81	87.114	ENSMMOG00000011333	parn	90	87.114	Mola_mola
ENSKMAG00000009462	parn	73	80.684	ENSMODG00000004915	PARN	99	80.684	Monodelphis_domestica
ENSKMAG00000009462	parn	96	85.845	ENSMALG00000019426	parn	94	90.217	Monopterus_albus
ENSKMAG00000009462	parn	83	72.021	MGP_CAROLIEiJ_G0020466	Parn	91	72.193	Mus_caroli
ENSKMAG00000009462	parn	83	71.848	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSKMAG00000009462	parn	82	72.251	MGP_PahariEiJ_G0016172	Parn	89	72.743	Mus_pahari
ENSKMAG00000009462	parn	83	72.318	MGP_SPRETEiJ_G0021361	Parn	91	72.318	Mus_spretus
ENSKMAG00000009462	parn	83	73.973	ENSMPUG00000014464	PARN	95	71.987	Mustela_putorius_furo
ENSKMAG00000009462	parn	73	77.778	ENSMLUG00000005414	PARN	100	77.778	Myotis_lucifugus
ENSKMAG00000009462	parn	81	88.364	ENSNBRG00000006805	parn	93	88.364	Neolamprologus_brichardi
ENSKMAG00000009462	parn	84	73.559	ENSNLEG00000010241	PARN	91	76.271	Nomascus_leucogenys
ENSKMAG00000009462	parn	69	64.167	ENSMEUG00000008178	-	74	64.167	Notamacropus_eugenii
ENSKMAG00000009462	parn	82	68.739	ENSOPRG00000012187	PARN	91	68.739	Ochotona_princeps
ENSKMAG00000009462	parn	79	71.614	ENSODEG00000001617	PARN	85	71.614	Octodon_degus
ENSKMAG00000009462	parn	100	87.427	ENSONIG00000000151	parn	100	87.427	Oreochromis_niloticus
ENSKMAG00000009462	parn	83	73.299	ENSOCUG00000000322	PARN	92	73.299	Oryctolagus_cuniculus
ENSKMAG00000009462	parn	100	84.457	ENSORLG00020010313	parn	100	84.604	Oryzias_latipes_hni
ENSKMAG00000009462	parn	100	84.164	ENSORLG00015000300	parn	100	84.311	Oryzias_latipes_hsok
ENSKMAG00000009462	parn	100	83.455	ENSOMEG00000019555	parn	100	83.455	Oryzias_melastigma
ENSKMAG00000009462	parn	73	78.024	ENSOGAG00000014626	PARN	100	78.024	Otolemur_garnettii
ENSKMAG00000009462	parn	73	80.000	ENSOARG00000007574	PARN	100	80.000	Ovis_aries
ENSKMAG00000009462	parn	84	73.891	ENSPPAG00000031438	PARN	91	76.271	Pan_paniscus
ENSKMAG00000009462	parn	79	78.545	ENSPPRG00000018583	PARN	83	78.545	Panthera_pardus
ENSKMAG00000009462	parn	79	78.545	ENSPTIG00000012135	PARN	83	78.545	Panthera_tigris_altaica
ENSKMAG00000009462	parn	84	73.891	ENSPTRG00000007792	PARN	91	76.271	Pan_troglodytes
ENSKMAG00000009462	parn	84	71.502	ENSPANG00000020099	PARN	93	76.271	Papio_anubis
ENSKMAG00000009462	parn	99	68.946	ENSPKIG00000022807	parn	96	69.088	Paramormyrops_kingsleyae
ENSKMAG00000009462	parn	91	65.267	ENSPSIG00000014804	PARN	100	65.105	Pelodiscus_sinensis
ENSKMAG00000009462	parn	90	76.585	ENSPMGG00000014431	parn	85	77.236	Periophthalmus_magnuspinnatus
ENSKMAG00000009462	parn	83	71.107	ENSPEMG00000018439	Parn	91	71.107	Peromyscus_maniculatus_bairdii
ENSKMAG00000009462	parn	78	69.376	ENSPMAG00000003956	parn	99	69.376	Petromyzon_marinus
ENSKMAG00000009462	parn	62	72.406	ENSPCIG00000001259	PARN	91	76.271	Phascolarctos_cinereus
ENSKMAG00000009462	parn	100	86.091	ENSPFOG00000012823	parn	100	86.823	Poecilia_formosa
ENSKMAG00000009462	parn	100	86.091	ENSPLAG00000006395	parn	100	86.823	Poecilia_latipinna
ENSKMAG00000009462	parn	100	86.237	ENSPMEG00000007711	parn	100	86.969	Poecilia_mexicana
ENSKMAG00000009462	parn	100	86.676	ENSPREG00000000147	parn	100	87.408	Poecilia_reticulata
ENSKMAG00000009462	parn	84	73.469	ENSPPYG00000007123	PARN	91	73.469	Pongo_abelii
ENSKMAG00000009462	parn	78	64.130	ENSPCAG00000001741	PARN	90	64.130	Procavia_capensis
ENSKMAG00000009462	parn	83	70.940	ENSPCOG00000019292	PARN	91	74.576	Propithecus_coquereli
ENSKMAG00000009462	parn	83	70.698	ENSPVAG00000002547	PARN	92	70.698	Pteropus_vampyrus
ENSKMAG00000009462	parn	100	86.842	ENSPNYG00000006835	parn	100	86.842	Pundamilia_nyererei
ENSKMAG00000009462	parn	93	70.394	ENSPNAG00000018905	parn	100	70.394	Pygocentrus_nattereri
ENSKMAG00000009462	parn	84	72.279	ENSRNOG00000002912	Parn	96	78.571	Rattus_norvegicus
ENSKMAG00000009462	parn	84	72.184	ENSSBOG00000034726	PARN	94	76.271	Saimiri_boliviensis_boliviensis
ENSKMAG00000009462	parn	61	79.187	ENSSHAG00000008493	PARN	93	79.187	Sarcophilus_harrisii
ENSKMAG00000009462	parn	100	70.839	ENSSFOG00015014165	parn	99	75.251	Scleropages_formosus
ENSKMAG00000009462	parn	100	82.690	ENSSMAG00000000685	parn	100	82.833	Scophthalmus_maximus
ENSKMAG00000009462	parn	100	86.463	ENSSDUG00000014555	parn	100	86.900	Seriola_dumerili
ENSKMAG00000009462	parn	64	80.000	ENSSARG00000014339	PARN	75	80.000	Sorex_araneus
ENSKMAG00000009462	parn	83	73.333	ENSSPUG00000007719	PARN	91	73.333	Sphenodon_punctatus
ENSKMAG00000009462	parn	100	88.450	ENSSPAG00000007095	parn	100	88.450	Stegastes_partitus
ENSKMAG00000009462	parn	83	73.459	ENSSSCG00000007878	PARN	81	73.459	Sus_scrofa
ENSKMAG00000009462	parn	52	30.084	ENSTGUG00000011418	PNLDC1	68	30.084	Taeniopygia_guttata
ENSKMAG00000009462	parn	85	72.093	ENSTGUG00000004971	PARN	95	72.131	Taeniopygia_guttata
ENSKMAG00000009462	parn	83	87.478	ENSTNIG00000008252	parn	100	75.877	Tetraodon_nigroviridis
ENSKMAG00000009462	parn	75	62.500	ENSTBEG00000010407	PARN	90	62.500	Tupaia_belangeri
ENSKMAG00000009462	parn	72	79.055	ENSTTRG00000002843	PARN	77	79.055	Tursiops_truncatus
ENSKMAG00000009462	parn	64	70.709	ENSUAMG00000008283	PARN	90	70.709	Ursus_americanus
ENSKMAG00000009462	parn	84	73.514	ENSUMAG00000004527	PARN	95	71.545	Ursus_maritimus
ENSKMAG00000009462	parn	82	70.884	ENSVPAG00000008968	PARN	93	70.884	Vicugna_pacos
ENSKMAG00000009462	parn	79	77.985	ENSVVUG00000019509	PARN	83	77.985	Vulpes_vulpes
ENSKMAG00000009462	parn	83	71.111	ENSXETG00000010994	parn	100	75.849	Xenopus_tropicalis
ENSKMAG00000009462	parn	87	84.654	ENSXCOG00000015990	parn	99	84.654	Xiphophorus_couchianus
ENSKMAG00000009462	parn	100	85.777	ENSXMAG00000014783	parn	100	85.777	Xiphophorus_maculatus