EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000009696 (Gene tree)
Gene ID: 108248172
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 23062 bases
Position: chrLWHD01000321.1:246752-269813
Accession: 108248172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000013112	ResIII	PF04851.15	9.4e-08	1	1
ENSKMAP00000013048	ResIII	PF04851.15	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000013244	-	6921	XM_017436768	ENSKMAP00000013048	1403 (aa)	XP_017292257	UPI0007F8982D
ENSKMAT00000013312	-	4035	-	ENSKMAP00000013112	1344 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000009696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000009696's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000009696	sbno1	77	64.450	ENSKMAG00000005541	si:ch73-63e15.2	66	63.719

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000009696	sbno1	99	75.702	ENSG00000139697	SBNO1	99	75.653	Homo_sapiens
ENSKMAG00000009696	sbno1	85	95.043	ENSAPOG00000003196	sbno1	98	95.043	Acanthochromis_polyacanthus
ENSKMAG00000009696	sbno1	99	75.823	ENSAMEG00000015151	SBNO1	99	75.493	Ailuropoda_melanoleuca
ENSKMAG00000009696	sbno1	100	88.994	ENSACIG00000008088	sbno1	99	89.213	Amphilophus_citrinellus
ENSKMAG00000009696	sbno1	100	92.537	ENSAOCG00000014859	sbno1	99	92.537	Amphiprion_ocellaris
ENSKMAG00000009696	sbno1	100	92.466	ENSAPEG00000006069	sbno1	99	92.466	Amphiprion_percula
ENSKMAG00000009696	sbno1	99	92.587	ENSATEG00000006667	sbno1	99	92.587	Anabas_testudineus
ENSKMAG00000009696	sbno1	98	76.525	ENSAPLG00000015674	SBNO1	99	76.433	Anas_platyrhynchos
ENSKMAG00000009696	sbno1	98	75.880	ENSACAG00000015441	SBNO1	88	76.194	Anolis_carolinensis
ENSKMAG00000009696	sbno1	95	84.124	ENSANAG00000029958	-	99	76.676	Aotus_nancymaae
ENSKMAG00000009696	sbno1	100	89.466	ENSACLG00000024913	sbno1	100	89.614	Astatotilapia_calliptera
ENSKMAG00000009696	sbno1	99	81.935	ENSAMXG00000019473	sbno1	99	82.148	Astyanax_mexicanus
ENSKMAG00000009696	sbno1	100	76.573	ENSBTAG00000020505	SBNO1	99	76.906	Bos_taurus
ENSKMAG00000009696	sbno1	99	75.935	ENSCJAG00000016599	SBNO1	99	75.653	Callithrix_jacchus
ENSKMAG00000009696	sbno1	99	75.806	ENSCAFG00000007503	SBNO1	97	84.921	Canis_familiaris
ENSKMAG00000009696	sbno1	95	81.851	ENSCAFG00020015363	SBNO1	99	81.408	Canis_lupus_dingo
ENSKMAG00000009696	sbno1	96	83.096	ENSCHIG00000008382	SBNO1	99	83.935	Capra_hircus
ENSKMAG00000009696	sbno1	99	76.633	ENSTSYG00000012749	SBNO1	99	77.536	Carlito_syrichta
ENSKMAG00000009696	sbno1	91	84.545	ENSCAPG00000000384	SBNO1	99	84.545	Cavia_aperea
ENSKMAG00000009696	sbno1	95	84.545	ENSCPOG00000008109	SBNO1	99	84.545	Cavia_porcellus
ENSKMAG00000009696	sbno1	99	72.169	ENSCCAG00000035316	SBNO1	99	72.909	Cebus_capucinus
ENSKMAG00000009696	sbno1	93	83.935	ENSCATG00000008239	SBNO1	98	83.935	Cercocebus_atys
ENSKMAG00000009696	sbno1	95	84.545	ENSCLAG00000008995	SBNO1	99	84.545	Chinchilla_lanigera
ENSKMAG00000009696	sbno1	86	81.818	ENSCSAG00000002064	SBNO1	99	82.053	Chlorocebus_sabaeus
ENSKMAG00000009696	sbno1	96	72.829	ENSCHOG00000008814	SBNO1	95	73.026	Choloepus_hoffmanni
ENSKMAG00000009696	sbno1	98	77.083	ENSCPBG00000025968	SBNO1	98	76.957	Chrysemys_picta_bellii
ENSKMAG00000009696	sbno1	99	72.171	ENSCANG00000042688	-	99	71.963	Colobus_angolensis_palliatus
ENSKMAG00000009696	sbno1	95	83.485	ENSCGRG00001017470	Sbno1	99	83.032	Cricetulus_griseus_chok1gshd
ENSKMAG00000009696	sbno1	95	83.485	ENSCGRG00000004756	Sbno1	99	83.032	Cricetulus_griseus_crigri
ENSKMAG00000009696	sbno1	100	88.486	ENSCSEG00000011919	sbno1	100	88.628	Cynoglossus_semilaevis
ENSKMAG00000009696	sbno1	99	92.577	ENSCVAG00000007038	sbno1	99	92.505	Cyprinodon_variegatus
ENSKMAG00000009696	sbno1	100	81.676	ENSDARG00000099080	sbno1	100	81.747	Danio_rerio
ENSKMAG00000009696	sbno1	99	78.203	ENSDNOG00000017147	SBNO1	96	78.203	Dasypus_novemcinctus
ENSKMAG00000009696	sbno1	99	71.255	ENSDORG00000015261	Sbno1	99	71.326	Dipodomys_ordii
ENSKMAG00000009696	sbno1	93	72.381	ENSETEG00000005620	SBNO1	93	72.381	Echinops_telfairi
ENSKMAG00000009696	sbno1	74	63.382	ENSEBUG00000013823	sbno1	93	62.428	Eptatretus_burgeri
ENSKMAG00000009696	sbno1	51	72.790	ENSEASG00005012595	-	92	76.308	Equus_asinus_asinus
ENSKMAG00000009696	sbno1	99	75.843	ENSECAG00000006127	SBNO1	99	76.274	Equus_caballus
ENSKMAG00000009696	sbno1	81	77.654	ENSEEUG00000003793	SBNO1	82	76.503	Erinaceus_europaeus
ENSKMAG00000009696	sbno1	99	83.724	ENSELUG00000002886	sbno1	99	83.191	Esox_lucius
ENSKMAG00000009696	sbno1	99	75.913	ENSFCAG00000015331	SBNO1	99	75.723	Felis_catus
ENSKMAG00000009696	sbno1	98	76.525	ENSFALG00000009273	SBNO1	99	76.433	Ficedula_albicollis
ENSKMAG00000009696	sbno1	95	81.159	ENSFDAG00000014232	SBNO1	99	79.438	Fukomys_damarensis
ENSKMAG00000009696	sbno1	99	93.005	ENSFHEG00000007360	sbno1	99	92.577	Fundulus_heteroclitus
ENSKMAG00000009696	sbno1	97	84.271	ENSGMOG00000018229	sbno1	99	84.887	Gadus_morhua
ENSKMAG00000009696	sbno1	88	76.433	ENSGALG00000003392	SBNO1	99	76.377	Gallus_gallus
ENSKMAG00000009696	sbno1	99	93.005	ENSGAFG00000003960	sbno1	99	92.791	Gambusia_affinis
ENSKMAG00000009696	sbno1	97	88.520	ENSGACG00000015633	sbno1	99	89.489	Gasterosteus_aculeatus
ENSKMAG00000009696	sbno1	98	76.716	ENSGAGG00000001065	SBNO1	99	76.596	Gopherus_agassizii
ENSKMAG00000009696	sbno1	95	84.364	ENSGGOG00000015000	SBNO1	99	84.364	Gorilla_gorilla
ENSKMAG00000009696	sbno1	99	82.925	ENSHBUG00000011910	sbno1	99	82.950	Haplochromis_burtoni
ENSKMAG00000009696	sbno1	95	84.672	ENSHGLG00000014165	-	99	75.424	Heterocephalus_glaber_female
ENSKMAG00000009696	sbno1	91	92.475	ENSHCOG00000003246	sbno1	95	92.475	Hippocampus_comes
ENSKMAG00000009696	sbno1	99	81.605	ENSIPUG00000015830	Sbno1	98	82.968	Ictalurus_punctatus
ENSKMAG00000009696	sbno1	95	84.211	ENSSTOG00000023221	SBNO1	99	83.755	Ictidomys_tridecemlineatus
ENSKMAG00000009696	sbno1	95	80.762	ENSJJAG00000001741	Sbno1	99	80.325	Jaculus_jaculus
ENSKMAG00000009696	sbno1	100	89.929	ENSLBEG00000007623	sbno1	100	90.142	Labrus_bergylta
ENSKMAG00000009696	sbno1	99	73.221	ENSLACG00000017227	SBNO1	99	75.159	Latimeria_chalumnae
ENSKMAG00000009696	sbno1	99	81.131	ENSLOCG00000005725	sbno1	97	80.848	Lepisosteus_oculatus
ENSKMAG00000009696	sbno1	99	75.351	ENSLAFG00000002135	SBNO1	99	75.300	Loxodonta_africana
ENSKMAG00000009696	sbno1	95	81.329	ENSMFAG00000031429	SBNO1	99	80.893	Macaca_fascicularis
ENSKMAG00000009696	sbno1	95	81.329	ENSMMUG00000011496	SBNO1	99	80.893	Macaca_mulatta
ENSKMAG00000009696	sbno1	95	84.211	ENSMLEG00000033260	SBNO1	99	83.755	Mandrillus_leucophaeus
ENSKMAG00000009696	sbno1	100	91.601	ENSMAMG00000005473	sbno1	100	91.388	Mastacembelus_armatus
ENSKMAG00000009696	sbno1	98	76.636	ENSMGAG00000003274	SBNO1	99	76.471	Meleagris_gallopavo
ENSKMAG00000009696	sbno1	51	72.472	ENSMAUG00000004834	-	99	75.893	Mesocricetus_auratus
ENSKMAG00000009696	sbno1	95	81.204	ENSMICG00000006573	-	99	75.437	Microcebus_murinus
ENSKMAG00000009696	sbno1	95	84.182	ENSMOCG00000009390	Sbno1	99	84.182	Microtus_ochrogaster
ENSKMAG00000009696	sbno1	100	85.231	ENSMMOG00000008691	sbno1	99	85.830	Mola_mola
ENSKMAG00000009696	sbno1	99	75.527	ENSMODG00000012470	SBNO1	98	75.584	Monodelphis_domestica
ENSKMAG00000009696	sbno1	100	91.258	ENSMALG00000001056	sbno1	100	91.258	Monopterus_albus
ENSKMAG00000009696	sbno1	99	75.265	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSKMAG00000009696	sbno1	99	75.369	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSKMAG00000009696	sbno1	99	75.725	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSKMAG00000009696	sbno1	99	75.299	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSKMAG00000009696	sbno1	99	75.896	ENSMPUG00000001658	SBNO1	99	75.706	Mustela_putorius_furo
ENSKMAG00000009696	sbno1	99	75.353	ENSMLUG00000017159	SBNO1	99	75.282	Myotis_lucifugus
ENSKMAG00000009696	sbno1	92	84.375	ENSNGAG00000012620	Sbno1	98	84.375	Nannospalax_galili
ENSKMAG00000009696	sbno1	100	87.941	ENSNBRG00000019189	sbno1	100	88.015	Neolamprologus_brichardi
ENSKMAG00000009696	sbno1	99	73.493	ENSNLEG00000001502	SBNO1	99	75.271	Nomascus_leucogenys
ENSKMAG00000009696	sbno1	62	71.069	ENSMEUG00000008768	-	93	74.214	Notamacropus_eugenii
ENSKMAG00000009696	sbno1	99	74.718	ENSOPRG00000011054	SBNO1	99	74.770	Ochotona_princeps
ENSKMAG00000009696	sbno1	95	84.545	ENSODEG00000009997	SBNO1	99	84.545	Octodon_degus
ENSKMAG00000009696	sbno1	100	91.756	ENSONIG00000015348	sbno1	100	91.756	Oreochromis_niloticus
ENSKMAG00000009696	sbno1	98	74.982	ENSOCUG00000002441	SBNO1	95	74.642	Oryctolagus_cuniculus
ENSKMAG00000009696	sbno1	99	89.680	ENSORLG00000001593	sbno1	99	89.822	Oryzias_latipes
ENSKMAG00000009696	sbno1	99	89.601	ENSORLG00020015216	sbno1	99	89.459	Oryzias_latipes_hni
ENSKMAG00000009696	sbno1	99	89.672	ENSORLG00015002726	sbno1	99	89.530	Oryzias_latipes_hsok
ENSKMAG00000009696	sbno1	100	89.118	ENSOMEG00000019313	sbno1	100	88.549	Oryzias_melastigma
ENSKMAG00000009696	sbno1	51	71.910	ENSOGAG00000010781	-	99	76.401	Otolemur_garnettii
ENSKMAG00000009696	sbno1	100	75.017	ENSOARG00000004404	SBNO1	99	75.352	Ovis_aries
ENSKMAG00000009696	sbno1	95	84.364	ENSPPAG00000024635	SBNO1	99	84.364	Pan_paniscus
ENSKMAG00000009696	sbno1	99	75.913	ENSPPRG00000022092	SBNO1	99	75.723	Panthera_pardus
ENSKMAG00000009696	sbno1	99	75.932	ENSPTIG00000017803	SBNO1	99	75.743	Panthera_tigris_altaica
ENSKMAG00000009696	sbno1	95	84.364	ENSPTRG00000005597	SBNO1	99	84.364	Pan_troglodytes
ENSKMAG00000009696	sbno1	95	84.211	ENSPANG00000011640	SBNO1	99	83.755	Papio_anubis
ENSKMAG00000009696	sbno1	99	80.595	ENSPKIG00000001441	sbno1	99	80.878	Paramormyrops_kingsleyae
ENSKMAG00000009696	sbno1	92	72.713	ENSPSIG00000009256	-	99	72.651	Pelodiscus_sinensis
ENSKMAG00000009696	sbno1	98	77.215	ENSPSIG00000009572	-	99	77.160	Pelodiscus_sinensis
ENSKMAG00000009696	sbno1	95	84.000	ENSPEMG00000016087	Sbno1	99	84.000	Peromyscus_maniculatus_bairdii
ENSKMAG00000009696	sbno1	99	76.406	ENSPCIG00000010985	SBNO1	99	76.603	Phascolarctos_cinereus
ENSKMAG00000009696	sbno1	99	93.647	ENSPFOG00000005069	sbno1	99	93.647	Poecilia_formosa
ENSKMAG00000009696	sbno1	99	93.647	ENSPLAG00000015015	sbno1	99	93.647	Poecilia_latipinna
ENSKMAG00000009696	sbno1	99	93.652	ENSPMEG00000021212	sbno1	99	93.652	Poecilia_mexicana
ENSKMAG00000009696	sbno1	99	92.939	ENSPREG00000017746	sbno1	99	92.939	Poecilia_reticulata
ENSKMAG00000009696	sbno1	99	75.563	ENSPPYG00000005084	SBNO1	99	75.796	Pongo_abelii
ENSKMAG00000009696	sbno1	84	77.064	ENSPCAG00000008634	SBNO1	88	68.659	Procavia_capensis
ENSKMAG00000009696	sbno1	95	84.066	ENSPCOG00000024277	SBNO1	99	84.066	Propithecus_coquereli
ENSKMAG00000009696	sbno1	87	84.400	ENSPVAG00000015304	SBNO1	87	84.400	Pteropus_vampyrus
ENSKMAG00000009696	sbno1	99	91.589	ENSPNYG00000004291	sbno1	100	91.400	Pundamilia_nyererei
ENSKMAG00000009696	sbno1	100	81.928	ENSPNAG00000015622	sbno1	100	81.573	Pygocentrus_nattereri
ENSKMAG00000009696	sbno1	95	84.000	ENSRNOG00000001064	Sbno1	99	84.000	Rattus_norvegicus
ENSKMAG00000009696	sbno1	95	84.211	ENSRROG00000034230	SBNO1	99	83.755	Rhinopithecus_roxellana
ENSKMAG00000009696	sbno1	98	74.887	ENSSBOG00000015422	SBNO1	99	74.143	Saimiri_boliviensis_boliviensis
ENSKMAG00000009696	sbno1	99	82.051	ENSSFOG00015019025	sbno1	99	82.271	Scleropages_formosus
ENSKMAG00000009696	sbno1	100	92.242	ENSSMAG00000013640	sbno1	100	92.242	Scophthalmus_maximus
ENSKMAG00000009696	sbno1	100	92.893	ENSSDUG00000023480	sbno1	100	92.893	Seriola_dumerili
ENSKMAG00000009696	sbno1	100	92.679	ENSSLDG00000007928	sbno1	100	92.679	Seriola_lalandi_dorsalis
ENSKMAG00000009696	sbno1	89	81.494	ENSSARG00000002594	SBNO1	89	81.656	Sorex_araneus
ENSKMAG00000009696	sbno1	98	77.083	ENSSPUG00000012640	SBNO1	99	76.957	Sphenodon_punctatus
ENSKMAG00000009696	sbno1	100	93.319	ENSSPAG00000016244	sbno1	100	93.319	Stegastes_partitus
ENSKMAG00000009696	sbno1	99	76.577	ENSSSCG00000009776	SBNO1	99	76.839	Sus_scrofa
ENSKMAG00000009696	sbno1	98	76.331	ENSTGUG00000005380	SBNO1	99	76.292	Taeniopygia_guttata
ENSKMAG00000009696	sbno1	99	86.496	ENSTRUG00000018490	sbno1	99	86.994	Takifugu_rubripes
ENSKMAG00000009696	sbno1	57	84.807	ENSTNIG00000013506	sbno1	99	84.336	Tetraodon_nigroviridis
ENSKMAG00000009696	sbno1	99	75.913	ENSUAMG00000019671	SBNO1	99	75.723	Ursus_americanus
ENSKMAG00000009696	sbno1	99	75.913	ENSUMAG00000004002	SBNO1	99	75.723	Ursus_maritimus
ENSKMAG00000009696	sbno1	95	76.190	ENSVPAG00000007024	SBNO1	95	76.190	Vicugna_pacos
ENSKMAG00000009696	sbno1	99	75.913	ENSVVUG00000027807	SBNO1	99	75.723	Vulpes_vulpes
ENSKMAG00000009696	sbno1	99	73.258	ENSXETG00000031930	SBNO1	99	72.772	Xenopus_tropicalis
ENSKMAG00000009696	sbno1	88	91.079	ENSXCOG00000011607	sbno1	99	89.480	Xiphophorus_couchianus
ENSKMAG00000009696	sbno1	99	93.581	ENSXMAG00000002140	sbno1	99	93.581	Xiphophorus_maculatus