EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000011170 (Gene tree)
Gene ID: 108245289
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 26919 bases
Position: chrLWHD01000167.1:799095-826013
Accession: 108245289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000014965	RRM_1	PF00076.22	1.1e-12	1	1
ENSKMAP00000014939	RRM_1	PF00076.22	1.5e-12	1	1
ENSKMAP00000014955	RRM_1	PF00076.22	1.5e-12	1	1
ENSKMAP00000014962	RRM_1	PF00076.22	1.5e-12	1	1
ENSKMAP00000014917	RRM_1	PF00076.22	1.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000015155	-	3198	XM_017432057	ENSKMAP00000014939	306 (aa)	XP_017287546	UPI0007F90759
ENSKMAT00000015179	-	3081	XM_017432055	ENSKMAP00000014962	306 (aa)	XP_017287544	UPI0007F90759
ENSKMAT00000015134	-	4552	-	ENSKMAP00000014917	309 (aa)	-	-
ENSKMAT00000015182	-	795	-	ENSKMAP00000014965	264 (aa)	-	-
ENSKMAT00000015172	-	3081	XM_017432053	ENSKMAP00000014955	306 (aa)	XP_017287542	UPI0007F90759

Gene Model

Click here to download ENSKMAG00000011170's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000011170's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000011170	-	97	49.828	ENSKMAG00000018155	-	74	57.727
ENSKMAG00000011170	-	81	79.921	ENSKMAG00000018265	-	86	77.617
ENSKMAG00000011170	-	72	50.769	ENSKMAG00000015656	raly	77	53.093
ENSKMAG00000011170	-	73	52.000	ENSKMAG00000022093	-	95	48.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000011170	-	83	51.866	ENSG00000184672	RALYL	93	77.215	Homo_sapiens
ENSKMAG00000011170	-	91	89.362	ENSAPOG00000006963	hnrnpc	92	90.000	Acanthochromis_polyacanthus
ENSKMAG00000011170	-	89	92.674	ENSACIG00000000270	-	91	92.620	Amphilophus_citrinellus
ENSKMAG00000011170	-	99	69.395	ENSACIG00000016568	-	96	73.408	Amphilophus_citrinellus
ENSKMAG00000011170	-	91	89.007	ENSAOCG00000003896	-	92	89.643	Amphiprion_ocellaris
ENSKMAG00000011170	-	81	79.842	ENSAOCG00000021616	-	89	77.083	Amphiprion_ocellaris
ENSKMAG00000011170	-	91	89.007	ENSAPEG00000001489	-	92	89.643	Amphiprion_percula
ENSKMAG00000011170	-	83	80.156	ENSAPEG00000019962	-	89	77.778	Amphiprion_percula
ENSKMAG00000011170	-	89	91.176	ENSATEG00000011734	-	91	90.000	Anabas_testudineus
ENSKMAG00000011170	-	84	79.848	ENSATEG00000018006	-	95	69.884	Anabas_testudineus
ENSKMAG00000011170	-	98	45.578	ENSAPLG00000015574	RALYL	96	49.466	Anas_platyrhynchos
ENSKMAG00000011170	-	98	44.966	ENSACAG00000028464	RALYL	97	47.987	Anolis_carolinensis
ENSKMAG00000011170	-	84	51.493	ENSANAG00000023383	RALYL	94	48.727	Aotus_nancymaae
ENSKMAG00000011170	-	91	87.633	ENSACLG00000000995	-	92	89.324	Astatotilapia_calliptera
ENSKMAG00000011170	-	91	87.279	ENSACLG00000013636	-	94	88.571	Astatotilapia_calliptera
ENSKMAG00000011170	-	84	79.468	ENSACLG00000005707	-	92	79.336	Astatotilapia_calliptera
ENSKMAG00000011170	-	68	77.033	ENSAMXG00000042946	hnrnpc	95	75.269	Astyanax_mexicanus
ENSKMAG00000011170	-	84	78.125	ENSAMXG00000034915	zgc:55733	92	76.316	Astyanax_mexicanus
ENSKMAG00000011170	-	84	51.493	ENSCJAG00000000402	RALYL	94	48.727	Callithrix_jacchus
ENSKMAG00000011170	-	98	46.622	ENSCPOG00000012314	RALYL	94	48.601	Cavia_porcellus
ENSKMAG00000011170	-	84	52.239	ENSCCAG00000025003	RALYL	77	77.215	Cebus_capucinus
ENSKMAG00000011170	-	83	51.866	ENSCATG00000042145	RALYL	94	49.458	Cercocebus_atys
ENSKMAG00000011170	-	98	45.734	ENSCLAG00000005228	RALYL	94	48.601	Chinchilla_lanigera
ENSKMAG00000011170	-	73	52.655	ENSCHOG00000013228	RALYL	75	51.786	Choloepus_hoffmanni
ENSKMAG00000011170	-	83	51.866	ENSCANG00000039144	RALYL	94	48.727	Colobus_angolensis_palliatus
ENSKMAG00000011170	-	98	45.333	ENSCGRG00001009241	Ralyl	79	53.390	Cricetulus_griseus_chok1gshd
ENSKMAG00000011170	-	70	81.567	ENSCSEG00000019769	-	72	81.517	Cynoglossus_semilaevis
ENSKMAG00000011170	-	77	78.601	ENSCSEG00000021349	-	85	73.455	Cynoglossus_semilaevis
ENSKMAG00000011170	-	83	82.308	ENSCVAG00000016981	-	83	78.309	Cyprinodon_variegatus
ENSKMAG00000011170	-	89	77.007	ENSCVAG00000002797	-	92	74.265	Cyprinodon_variegatus
ENSKMAG00000011170	-	85	80.077	ENSDARG00000103845	zgc:55733	96	78.788	Danio_rerio
ENSKMAG00000011170	-	77	79.167	ENSDARG00000053810	hnrnpc	85	75.182	Danio_rerio
ENSKMAG00000011170	-	97	46.552	ENSDORG00000003721	Ralyl	94	49.104	Dipodomys_ordii
ENSKMAG00000011170	-	55	55.747	ENSETEG00000014028	RALYL	82	59.877	Echinops_telfairi
ENSKMAG00000011170	-	96	44.565	ENSEBUG00000012363	hnrnpc	75	44.094	Eptatretus_burgeri
ENSKMAG00000011170	-	99	42.500	ENSEBUG00000006049	RALYL	96	42.960	Eptatretus_burgeri
ENSKMAG00000011170	-	83	48.399	ENSEEUG00000007202	RALYL	95	49.640	Erinaceus_europaeus
ENSKMAG00000011170	-	82	80.392	ENSELUG00000004132	-	92	78.022	Esox_lucius
ENSKMAG00000011170	-	78	80.545	ENSELUG00000007714	-	97	74.476	Esox_lucius
ENSKMAG00000011170	-	98	47.279	ENSFALG00000008647	RALYL	96	59.906	Ficedula_albicollis
ENSKMAG00000011170	-	83	77.860	ENSFHEG00000007278	-	90	71.959	Fundulus_heteroclitus
ENSKMAG00000011170	-	91	86.268	ENSFHEG00000003605	-	93	85.816	Fundulus_heteroclitus
ENSKMAG00000011170	-	86	50.602	ENSGALG00000036938	RALYL	97	48.322	Gallus_gallus
ENSKMAG00000011170	-	83	78.988	ENSGAFG00000020992	-	96	71.956	Gambusia_affinis
ENSKMAG00000011170	-	91	87.324	ENSGAFG00000020486	-	92	87.589	Gambusia_affinis
ENSKMAG00000011170	-	78	77.880	ENSGACG00000018932	-	93	72.646	Gasterosteus_aculeatus
ENSKMAG00000011170	-	86	79.478	ENSGACG00000017772	-	98	77.444	Gasterosteus_aculeatus
ENSKMAG00000011170	-	83	51.866	ENSGGOG00000000841	RALYL	94	49.458	Gorilla_gorilla
ENSKMAG00000011170	-	91	87.986	ENSHBUG00000018342	-	92	89.680	Haplochromis_burtoni
ENSKMAG00000011170	-	84	79.848	ENSHBUG00000010527	-	86	78.777	Haplochromis_burtoni
ENSKMAG00000011170	-	98	45.392	ENSHGLG00000004866	RALYL	94	48.252	Heterocephalus_glaber_female
ENSKMAG00000011170	-	98	45.392	ENSHGLG00100017480	RALYL	94	48.252	Heterocephalus_glaber_male
ENSKMAG00000011170	-	82	79.104	ENSHCOG00000012333	hnrnpc	96	73.401	Hippocampus_comes
ENSKMAG00000011170	-	84	79.231	ENSIPUG00000011271	hnrnpc	96	80.455	Ictalurus_punctatus
ENSKMAG00000011170	-	85	79.310	ENSIPUG00000008666	zgc:55733	92	81.731	Ictalurus_punctatus
ENSKMAG00000011170	-	98	45.578	ENSSTOG00000012583	RALYL	95	48.746	Ictidomys_tridecemlineatus
ENSKMAG00000011170	-	87	83.895	ENSLBEG00000006979	-	90	81.955	Labrus_bergylta
ENSKMAG00000011170	-	100	66.667	ENSLBEG00000006193	-	87	78.495	Labrus_bergylta
ENSKMAG00000011170	-	88	79.570	ENSLBEG00000024418	-	91	77.778	Labrus_bergylta
ENSKMAG00000011170	-	84	70.037	ENSLOCG00000002560	hnrnpc	94	71.014	Lepisosteus_oculatus
ENSKMAG00000011170	-	83	51.866	ENSMNEG00000033288	RALYL	94	49.458	Macaca_nemestrina
ENSKMAG00000011170	-	83	51.866	ENSMLEG00000038284	RALYL	94	49.458	Mandrillus_leucophaeus
ENSKMAG00000011170	-	84	80.228	ENSMAMG00000008033	-	96	78.058	Mastacembelus_armatus
ENSKMAG00000011170	-	91	89.753	ENSMAMG00000012236	-	91	90.391	Mastacembelus_armatus
ENSKMAG00000011170	-	91	87.633	ENSMZEG00005020460	-	92	89.324	Maylandia_zebra
ENSKMAG00000011170	-	84	79.468	ENSMZEG00005024249	-	86	79.336	Maylandia_zebra
ENSKMAG00000011170	-	98	45.333	ENSMAUG00000015149	Ralyl	79	53.390	Mesocricetus_auratus
ENSKMAG00000011170	-	97	47.842	ENSMICG00000005558	RALYL	80	77.215	Microcebus_murinus
ENSKMAG00000011170	-	98	46.259	ENSMOCG00000017371	Ralyl	79	53.390	Microtus_ochrogaster
ENSKMAG00000011170	-	83	88.189	ENSMMOG00000021465	-	94	88.848	Mola_mola
ENSKMAG00000011170	-	99	65.714	ENSMMOG00000019520	-	96	73.264	Mola_mola
ENSKMAG00000011170	-	84	81.853	ENSMALG00000014623	-	85	80.741	Monopterus_albus
ENSKMAG00000011170	-	88	83.539	ENSMALG00000007520	-	91	84.836	Monopterus_albus
ENSKMAG00000011170	-	98	45.000	ENSMUSG00000039717	Ralyl	93	75.949	Mus_musculus
ENSKMAG00000011170	-	98	44.898	ENSMPUG00000010724	RALYL	94	48.029	Mustela_putorius_furo
ENSKMAG00000011170	-	98	46.441	ENSNGAG00000013375	Ralyl	79	53.390	Nannospalax_galili
ENSKMAG00000011170	-	89	90.074	ENSNBRG00000004912	-	90	91.111	Neolamprologus_brichardi
ENSKMAG00000011170	-	99	66.071	ENSNBRG00000015676	-	93	72.015	Neolamprologus_brichardi
ENSKMAG00000011170	-	83	51.866	ENSNLEG00000002702	RALYL	89	50.362	Nomascus_leucogenys
ENSKMAG00000011170	-	61	50.259	ENSOPRG00000013650	-	98	48.756	Ochotona_princeps
ENSKMAG00000011170	-	98	46.075	ENSODEG00000001012	RALYL	94	48.252	Octodon_degus
ENSKMAG00000011170	-	81	91.200	ENSONIG00000007859	-	96	84.838	Oreochromis_niloticus
ENSKMAG00000011170	-	84	79.848	ENSONIG00000018350	-	86	78.777	Oreochromis_niloticus
ENSKMAG00000011170	-	91	78.169	ENSORLG00000009999	-	92	79.078	Oryzias_latipes
ENSKMAG00000011170	-	81	78.161	ENSORLG00000003144	-	85	75.887	Oryzias_latipes
ENSKMAG00000011170	-	91	77.817	ENSORLG00020018228	hnrnpc	92	78.723	Oryzias_latipes_hni
ENSKMAG00000011170	-	81	78.161	ENSORLG00015009460	-	84	75.887	Oryzias_latipes_hsok
ENSKMAG00000011170	-	91	78.169	ENSORLG00015019755	-	92	79.078	Oryzias_latipes_hsok
ENSKMAG00000011170	-	81	81.496	ENSOMEG00000022665	-	85	78.909	Oryzias_melastigma
ENSKMAG00000011170	-	85	80.524	ENSOMEG00000020488	-	92	80.919	Oryzias_melastigma
ENSKMAG00000011170	-	83	51.866	ENSPPAG00000038705	RALYL	94	49.458	Pan_paniscus
ENSKMAG00000011170	-	98	47.350	ENSPPRG00000018612	RALYL	94	50.000	Panthera_pardus
ENSKMAG00000011170	-	98	47.350	ENSPTIG00000020331	RALYL	94	50.000	Panthera_tigris_altaica
ENSKMAG00000011170	-	83	51.866	ENSPTRG00000020381	RALYL	94	49.458	Pan_troglodytes
ENSKMAG00000011170	-	83	51.866	ENSPANG00000029305	RALYL	94	49.458	Papio_anubis
ENSKMAG00000011170	-	90	77.113	ENSPKIG00000008592	-	88	77.305	Paramormyrops_kingsleyae
ENSKMAG00000011170	-	84	77.612	ENSPKIG00000022837	-	86	82.182	Paramormyrops_kingsleyae
ENSKMAG00000011170	-	99	46.284	ENSPSIG00000011135	RALYL	79	53.390	Pelodiscus_sinensis
ENSKMAG00000011170	-	80	80.088	ENSPMGG00000013144	-	97	71.595	Periophthalmus_magnuspinnatus
ENSKMAG00000011170	-	74	75.000	ENSPMGG00000017774	-	88	69.231	Periophthalmus_magnuspinnatus
ENSKMAG00000011170	-	98	45.333	ENSPEMG00000016447	Ralyl	79	53.390	Peromyscus_maniculatus_bairdii
ENSKMAG00000011170	-	73	50.218	ENSPMAG00000002407	RALYL	97	52.000	Petromyzon_marinus
ENSKMAG00000011170	-	96	70.550	ENSPFOG00000002643	-	86	75.986	Poecilia_formosa
ENSKMAG00000011170	-	91	88.070	ENSPFOG00000001583	-	92	88.339	Poecilia_formosa
ENSKMAG00000011170	-	81	79.051	ENSPLAG00000000061	-	89	74.483	Poecilia_latipinna
ENSKMAG00000011170	-	91	87.676	ENSPLAG00000015305	-	92	87.943	Poecilia_latipinna
ENSKMAG00000011170	-	81	78.656	ENSPMEG00000016524	-	86	77.419	Poecilia_mexicana
ENSKMAG00000011170	-	91	89.437	ENSPMEG00000004802	-	92	89.007	Poecilia_mexicana
ENSKMAG00000011170	-	81	78.261	ENSPREG00000001852	-	93	75.000	Poecilia_reticulata
ENSKMAG00000011170	-	91	87.324	ENSPREG00000007928	-	92	87.589	Poecilia_reticulata
ENSKMAG00000011170	-	84	44.106	ENSPPYG00000018710	-	84	77.419	Pongo_abelii
ENSKMAG00000011170	-	81	50.000	ENSPVAG00000010821	RALYL	80	49.180	Pteropus_vampyrus
ENSKMAG00000011170	-	83	88.976	ENSPNYG00000020293	-	98	86.063	Pundamilia_nyererei
ENSKMAG00000011170	-	84	79.848	ENSPNYG00000003747	-	92	78.700	Pundamilia_nyererei
ENSKMAG00000011170	-	85	74.254	ENSPNAG00000019200	zgc:55733	88	73.913	Pygocentrus_nattereri
ENSKMAG00000011170	-	78	80.335	ENSPNAG00000015686	hnrnpc	89	78.868	Pygocentrus_nattereri
ENSKMAG00000011170	-	83	51.866	ENSRROG00000023925	RALYL	82	75.309	Rhinopithecus_roxellana
ENSKMAG00000011170	-	99	66.071	ENSSFOG00015012015	-	96	70.400	Scleropages_formosus
ENSKMAG00000011170	-	82	78.544	ENSSFOG00015012924	-	80	94.937	Scleropages_formosus
ENSKMAG00000011170	-	83	76.136	ENSSMAG00000011147	-	97	71.481	Scophthalmus_maximus
ENSKMAG00000011170	-	85	84.848	ENSSMAG00000013592	-	90	85.106	Scophthalmus_maximus
ENSKMAG00000011170	-	91	89.362	ENSSDUG00000001723	-	92	90.000	Seriola_dumerili
ENSKMAG00000011170	-	84	82.692	ENSSDUG00000006730	-	86	80.147	Seriola_dumerili
ENSKMAG00000011170	-	89	88.809	ENSSLDG00000007454	-	92	89.286	Seriola_lalandi_dorsalis
ENSKMAG00000011170	-	84	82.692	ENSSLDG00000007474	-	94	80.147	Seriola_lalandi_dorsalis
ENSKMAG00000011170	-	84	80.843	ENSSPAG00000013996	-	86	78.623	Stegastes_partitus
ENSKMAG00000011170	-	90	90.323	ENSSPAG00000023204	-	92	90.714	Stegastes_partitus
ENSKMAG00000011170	-	98	46.939	ENSTGUG00000011689	RALYL	82	50.612	Taeniopygia_guttata
ENSKMAG00000011170	-	83	86.561	ENSTRUG00000020158	-	89	85.185	Takifugu_rubripes
ENSKMAG00000011170	-	82	77.953	ENSTNIG00000000334	-	99	76.952	Tetraodon_nigroviridis
ENSKMAG00000011170	-	83	81.853	ENSTNIG00000007427	-	88	82.353	Tetraodon_nigroviridis
ENSKMAG00000011170	-	76	47.639	ENSTBEG00000005551	RALYL	90	46.250	Tupaia_belangeri
ENSKMAG00000011170	-	98	43.945	ENSTTRG00000015762	RALYL	94	47.985	Tursiops_truncatus
ENSKMAG00000011170	-	98	44.964	ENSVPAG00000008501	RALYL	95	47.388	Vicugna_pacos
ENSKMAG00000011170	-	88	82.593	ENSXCOG00000006552	-	89	82.353	Xiphophorus_couchianus
ENSKMAG00000011170	-	50	87.730	ENSXCOG00000019434	-	71	87.349	Xiphophorus_couchianus
ENSKMAG00000011170	-	81	79.051	ENSXMAG00000022849	-	90	76.071	Xiphophorus_maculatus
ENSKMAG00000011170	-	91	86.972	ENSXMAG00000009333	-	92	86.525	Xiphophorus_maculatus