EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000011218 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 9481 bases
Position: chrLWHD01000436.1:227594-237074
Accession: 108249346
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000015011	zf-C2H2	PF00096.26	6.1e-16	1	2
ENSKMAP00000015011	zf-C2H2	PF00096.26	6.1e-16	2	2
ENSKMAP00000015011	zf-met	PF12874.7	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000015202	-	1282	XM_017438684	ENSKMAP00000014985	427 (aa)	XP_017294173	-
ENSKMAT00000015228	-	1827	-	ENSKMAP00000015011	608 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000011218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000011218's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000011218	prdm1b	91	37.679	ENSKMAG00000016247	-	78	37.838
ENSKMAG00000011218	prdm1b	69	64.865	ENSKMAG00000017597	prdm1a	76	41.558

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000011218	prdm1b	69	67.840	ENSAPOG00000022084	prdm1b	92	68.779	Acanthochromis_polyacanthus
ENSKMAG00000011218	prdm1b	89	38.149	ENSAPOG00000014135	-	77	38.149	Acanthochromis_polyacanthus
ENSKMAG00000011218	prdm1b	90	73.369	ENSACIG00000014426	prdm1b	92	73.369	Amphilophus_citrinellus
ENSKMAG00000011218	prdm1b	90	71.352	ENSAOCG00000002230	prdm1b	96	71.403	Amphiprion_ocellaris
ENSKMAG00000011218	prdm1b	93	67.672	ENSAPEG00000019826	prdm1b	97	67.391	Amphiprion_percula
ENSKMAG00000011218	prdm1b	91	72.089	ENSATEG00000006924	prdm1b	92	73.333	Anabas_testudineus
ENSKMAG00000011218	prdm1b	91	74.561	ENSACLG00000005487	prdm1b	88	74.561	Astatotilapia_calliptera
ENSKMAG00000011218	prdm1b	70	60.811	ENSCSEG00000009707	prdm1a	54	60.811	Cynoglossus_semilaevis
ENSKMAG00000011218	prdm1b	91	74.291	ENSCVAG00000016746	prdm1b	91	74.735	Cyprinodon_variegatus
ENSKMAG00000011218	prdm1b	50	62.162	ENSCVAG00000019081	prdm1a	79	40.453	Cyprinodon_variegatus
ENSKMAG00000011218	prdm1b	91	73.369	ENSFHEG00000019848	prdm1b	92	73.369	Fundulus_heteroclitus
ENSKMAG00000011218	prdm1b	75	62.162	ENSGAFG00000013012	-	61	62.162	Gambusia_affinis
ENSKMAG00000011218	prdm1b	90	74.476	ENSGAFG00000016191	prdm1b	91	74.650	Gambusia_affinis
ENSKMAG00000011218	prdm1b	91	65.253	ENSGACG00000002716	prdm1b	86	65.466	Gasterosteus_aculeatus
ENSKMAG00000011218	prdm1b	91	74.517	ENSHBUG00000001475	prdm1b	94	74.517	Haplochromis_burtoni
ENSKMAG00000011218	prdm1b	91	67.073	ENSHCOG00000003617	prdm1b	92	67.073	Hippocampus_comes
ENSKMAG00000011218	prdm1b	82	75.000	ENSIPUG00000013740	prdm1b	92	51.130	Ictalurus_punctatus
ENSKMAG00000011218	prdm1b	91	73.391	ENSLBEG00000020955	prdm1b	92	73.217	Labrus_bergylta
ENSKMAG00000011218	prdm1b	90	53.045	ENSLOCG00000004978	prdm1b	78	52.885	Lepisosteus_oculatus
ENSKMAG00000011218	prdm1b	91	72.982	ENSMZEG00005026361	prdm1b	87	72.982	Maylandia_zebra
ENSKMAG00000011218	prdm1b	91	72.935	ENSMMOG00000013458	prdm1b	94	72.935	Mola_mola
ENSKMAG00000011218	prdm1b	89	37.825	ENSMALG00000000462	-	78	37.739	Monopterus_albus
ENSKMAG00000011218	prdm1b	90	70.928	ENSMALG00000011410	prdm1b	94	71.103	Monopterus_albus
ENSKMAG00000011218	prdm1b	89	63.391	ENSONIG00000013583	prdm1b	86	63.391	Oreochromis_niloticus
ENSKMAG00000011218	prdm1b	90	68.063	ENSORLG00000010025	prdm1b	93	68.586	Oryzias_latipes
ENSKMAG00000011218	prdm1b	90	67.586	ENSORLG00015009022	prdm1b	92	68.403	Oryzias_latipes_hsok
ENSKMAG00000011218	prdm1b	91	48.841	ENSPKIG00000022335	prdm1b	81	47.973	Paramormyrops_kingsleyae
ENSKMAG00000011218	prdm1b	85	68.043	ENSPFOG00000003103	prdm1b	85	68.043	Poecilia_formosa
ENSKMAG00000011218	prdm1b	90	75.350	ENSPLAG00000018491	prdm1b	91	75.350	Poecilia_latipinna
ENSKMAG00000011218	prdm1b	91	75.795	ENSPMEG00000007869	prdm1b	91	75.795	Poecilia_mexicana
ENSKMAG00000011218	prdm1b	90	76.091	ENSPREG00000011327	prdm1b	91	76.091	Poecilia_reticulata
ENSKMAG00000011218	prdm1b	73	68.919	ENSPVAG00000011732	PRDM1	59	68.919	Pteropus_vampyrus
ENSKMAG00000011218	prdm1b	89	41.776	ENSPNAG00000028442	prdm1a	75	40.789	Pygocentrus_nattereri
ENSKMAG00000011218	prdm1b	89	59.459	ENSSFOG00015021896	prdm1b	78	59.459	Scleropages_formosus
ENSKMAG00000011218	prdm1b	78	57.727	ENSSMAG00000017518	-	60	57.727	Scophthalmus_maximus
ENSKMAG00000011218	prdm1b	91	71.254	ENSSMAG00000020467	prdm1b	92	71.254	Scophthalmus_maximus
ENSKMAG00000011218	prdm1b	91	75.436	ENSSDUG00000020610	prdm1b	92	75.436	Seriola_dumerili
ENSKMAG00000011218	prdm1b	90	75.657	ENSSLDG00000021973	prdm1b	93	75.657	Seriola_lalandi_dorsalis
ENSKMAG00000011218	prdm1b	91	73.252	ENSSPAG00000000803	prdm1b	96	74.229	Stegastes_partitus
ENSKMAG00000011218	prdm1b	93	37.778	ENSSPAG00000009830	-	78	37.937	Stegastes_partitus
ENSKMAG00000011218	prdm1b	90	75.355	ENSXCOG00000018920	prdm1b	81	75.355	Xiphophorus_couchianus
ENSKMAG00000011218	prdm1b	91	74.956	ENSXMAG00000016765	prdm1b	93	74.956	Xiphophorus_maculatus