EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSKMAG00000011251 (Gene tree)
Gene ID
108234994
Gene Symbol
MSI1
Alias
-
Full Name
RNA-binding protein Musashi homolog 1
Gene Type
protein_coding
Species
Kryptolebias_marmoratus
Status
putative
Strand
Plus strand
Length
18373 bases
Position
chrLWHD01000031.1:3603816-3622188
Accession
108234994
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSKMAP00000015032RRM_1PF00076.226.3e-3312
ENSKMAP00000015032RRM_1PF00076.226.3e-3322
ENSKMAP00000015058RRM_1PF00076.222.7e-1611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSKMAT00000015249MSI1-2013076XM_017414677ENSKMAP00000015032347 (aa)XP_017270166UPI0007F90DF9
ENSKMAT00000015275MSI1-202848-ENSKMAP00000015058168 (aa)--
Gene Model
Click here to download ENSKMAG00000011251's gene model file
Pathways
Pathway IDPathway NameSource
kmr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000011251's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSKMAG00000011251MSI15150.000ENSKMAG00000005188hnrnpaba8137.638
ENSKMAG00000011251MSI15034.177ENSKMAG00000006314rbm24a6236.047
ENSKMAG00000011251MSI15248.864ENSKMAG00000004310hnrnpd7739.200
ENSKMAG00000011251MSI19487.423ENSKMAG00000019877-10087.423
ENSKMAG00000011251MSI15245.000ENSKMAG00000003831-8137.643
ENSKMAG00000011251MSI15240.761ENSKMAG00000020859-5344.444
ENSKMAG00000011251MSI15736.527ENSKMAG00000015796tardbpl5436.527
ENSKMAG00000011251MSI15340.642ENSKMAG00000015973hnrnpa35540.642
ENSKMAG00000011251MSI19769.388ENSKMAG00000009494msi2a9869.388
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSKMAG00000011251MSI110083.702ENSG00000135097MSI110083.702Homo_sapiens
ENSKMAG00000011251MSI110092.837ENSAPOG00000003191MSI110092.837Acanthochromis_polyacanthus
ENSKMAG00000011251MSI110097.708ENSAPOG00000023458-10097.708Acanthochromis_polyacanthus
ENSKMAG00000011251MSI19463.780ENSAMEG00000013302MSI110063.517Ailuropoda_melanoleuca
ENSKMAG00000011251MSI19483.129ENSACIG00000017754-7292.118Amphilophus_citrinellus
ENSKMAG00000011251MSI15394.382ENSACIG00000018210zgc:1107969794.382Amphilophus_citrinellus
ENSKMAG00000011251MSI110092.837ENSAOCG00000003804MSI110092.837Amphiprion_ocellaris
ENSKMAG00000011251MSI19488.685ENSAOCG00000009031-9588.685Amphiprion_ocellaris
ENSKMAG00000011251MSI110092.837ENSAPEG00000003245MSI110092.837Amphiprion_percula
ENSKMAG00000011251MSI110097.708ENSAPEG00000006857-8497.708Amphiprion_percula
ENSKMAG00000011251MSI110084.703ENSATEG00000023779-10084.703Anabas_testudineus
ENSKMAG00000011251MSI110093.803ENSATEG00000017059MSI110093.803Anabas_testudineus
ENSKMAG00000011251MSI110083.934ENSACAG00000002762MSI110084.488Anolis_carolinensis
ENSKMAG00000011251MSI110083.702ENSANAG00000027151MSI110083.702Aotus_nancymaae
ENSKMAG00000011251MSI18283.566ENSANAG00000027901-8883.566Aotus_nancymaae
ENSKMAG00000011251MSI110098.276ENSACLG00000000117-10098.471Astatotilapia_calliptera
ENSKMAG00000011251MSI110092.308ENSACLG00000011230MSI110092.308Astatotilapia_calliptera
ENSKMAG00000011251MSI19492.163ENSAMXG00000038960msi17692.163Astyanax_mexicanus
ENSKMAG00000011251MSI110083.702ENSBTAG00000009800MSI110085.044Bos_taurus
ENSKMAG00000011251MSI110083.702ENSCJAG00000008578MSI110083.702Callithrix_jacchus
ENSKMAG00000011251MSI110083.425ENSCAFG00000010283MSI110083.425Canis_familiaris
ENSKMAG00000011251MSI19485.209ENSCAFG00020020585MSI110085.209Canis_lupus_dingo
ENSKMAG00000011251MSI110081.471ENSCHIG00000024304MSI110081.471Capra_hircus
ENSKMAG00000011251MSI19484.404ENSTSYG00000033949MSI19584.404Carlito_syrichta
ENSKMAG00000011251MSI19476.038ENSCAPG00000003919MSI17884.249Cavia_aperea
ENSKMAG00000011251MSI19584.884ENSCPOG00000012361MSI110085.088Cavia_porcellus
ENSKMAG00000011251MSI110083.702ENSCCAG00000035567MSI110083.702Cebus_capucinus
ENSKMAG00000011251MSI110083.702ENSCATG00000030019MSI110083.702Cercocebus_atys
ENSKMAG00000011251MSI19485.088ENSCLAG00000011329MSI110085.088Chinchilla_lanigera
ENSKMAG00000011251MSI17883.755ENSCSAG00000002265MSI19683.755Chlorocebus_sabaeus
ENSKMAG00000011251MSI110087.179ENSCPBG00000011349MSI110087.179Chrysemys_picta_bellii
ENSKMAG00000011251MSI19484.451ENSCANG00000040651MSI110084.451Colobus_angolensis_palliatus
ENSKMAG00000011251MSI110083.702ENSCGRG00001018883Msi110083.702Cricetulus_griseus_chok1gshd
ENSKMAG00000011251MSI19484.498ENSCGRG00000002191Msi17284.498Cricetulus_griseus_crigri
ENSKMAG00000011251MSI110092.000ENSCSEG00000005834-10092.000Cynoglossus_semilaevis
ENSKMAG00000011251MSI19489.264ENSCSEG00000011032MSI110089.264Cynoglossus_semilaevis
ENSKMAG00000011251MSI110097.414ENSCSEG00000008352-10097.414Cynoglossus_semilaevis
ENSKMAG00000011251MSI110097.126ENSCVAG00000009100MSI110097.126Cyprinodon_variegatus
ENSKMAG00000011251MSI16275.000ENSCVAG00000017463-8975.000Cyprinodon_variegatus
ENSKMAG00000011251MSI15387.912ENSCVAG00000017430zgc:1107969466.418Cyprinodon_variegatus
ENSKMAG00000011251MSI17990.698ENSDARG00000102015CABZ01037298.19890.698Danio_rerio
ENSKMAG00000011251MSI19488.254ENSDARG00000010710msi110093.458Danio_rerio
ENSKMAG00000011251MSI15387.912ENSDARG00000041299zgc:1107969890.217Danio_rerio
ENSKMAG00000011251MSI19481.329ENSDNOG00000005713MSI19181.329Dasypus_novemcinctus
ENSKMAG00000011251MSI19483.832ENSDORG00000005610Msi19483.832Dipodomys_ordii
ENSKMAG00000011251MSI19481.707ENSETEG00000004756MSI110081.707Echinops_telfairi
ENSKMAG00000011251MSI110083.702ENSEASG00005004736MSI110083.702Equus_asinus_asinus
ENSKMAG00000011251MSI110083.702ENSECAG00000017526MSI110083.702Equus_caballus
ENSKMAG00000011251MSI19489.112ENSELUG00000023219MSI19289.112Esox_lucius
ENSKMAG00000011251MSI19487.117ENSELUG00000023280-10087.117Esox_lucius
ENSKMAG00000011251MSI110083.702ENSFCAG00000011007MSI110083.702Felis_catus
ENSKMAG00000011251MSI19489.000ENSFALG00000007574MSI110089.000Ficedula_albicollis
ENSKMAG00000011251MSI19484.146ENSFDAG00000019586MSI110084.146Fukomys_damarensis
ENSKMAG00000011251MSI110092.286ENSFHEG00000003560-10092.286Fundulus_heteroclitus
ENSKMAG00000011251MSI110097.708ENSFHEG00000022446MSI110097.708Fundulus_heteroclitus
ENSKMAG00000011251MSI110083.286ENSGMOG00000017838-10083.286Gadus_morhua
ENSKMAG00000011251MSI110095.389ENSGMOG00000001006MSI19995.101Gadus_morhua
ENSKMAG00000011251MSI19488.550ENSGALG00000007227MSI19875.703Gallus_gallus
ENSKMAG00000011251MSI19492.661ENSGAFG00000021522MSI19492.661Gambusia_affinis
ENSKMAG00000011251MSI110074.644ENSGAFG00000005860-10074.644Gambusia_affinis
ENSKMAG00000011251MSI110096.562ENSGACG00000012679MSI110096.562Gasterosteus_aculeatus
ENSKMAG00000011251MSI110084.488ENSGACG00000008674-10084.488Gasterosteus_aculeatus
ENSKMAG00000011251MSI110087.179ENSGAGG00000016037MSI110087.179Gopherus_agassizii
ENSKMAG00000011251MSI19485.032ENSGGOG00000010328MSI110085.032Gorilla_gorilla
ENSKMAG00000011251MSI110098.276ENSHBUG00000011841-10098.276Haplochromis_burtoni
ENSKMAG00000011251MSI110092.308ENSHBUG00000021921MSI110092.308Haplochromis_burtoni
ENSKMAG00000011251MSI110083.425ENSHGLG00000012782MSI110083.425Heterocephalus_glaber_female
ENSKMAG00000011251MSI19484.146ENSHGLG00100016848MSI110084.146Heterocephalus_glaber_male
ENSKMAG00000011251MSI110092.898ENSHCOG00000012067-10092.898Hippocampus_comes
ENSKMAG00000011251MSI19091.374ENSHCOG00000012019MSI19591.374Hippocampus_comes
ENSKMAG00000011251MSI110090.544ENSIPUG00000001976msi110090.544Ictalurus_punctatus
ENSKMAG00000011251MSI19485.209ENSSTOG00000009799MSI110085.209Ictidomys_tridecemlineatus
ENSKMAG00000011251MSI110073.056ENSJJAG00000010643-10072.346Jaculus_jaculus
ENSKMAG00000011251MSI110083.702ENSJJAG00000010463Msi110083.702Jaculus_jaculus
ENSKMAG00000011251MSI110092.286ENSLBEG00000001375-10092.286Labrus_bergylta
ENSKMAG00000011251MSI110097.708ENSLBEG00000008789MSI110097.708Labrus_bergylta
ENSKMAG00000011251MSI19484.211ENSLACG00000018287MSI110084.211Latimeria_chalumnae
ENSKMAG00000011251MSI17864.052ENSLOCG00000008618zgc:1107969964.052Lepisosteus_oculatus
ENSKMAG00000011251MSI19075.227ENSLAFG00000009412MSI110075.227Loxodonta_africana
ENSKMAG00000011251MSI19485.088ENSMFAG00000001798MSI110085.088Macaca_fascicularis
ENSKMAG00000011251MSI19485.088ENSMMUG00000031527MSI19784.195Macaca_mulatta
ENSKMAG00000011251MSI110083.702ENSMNEG00000040034MSI110083.702Macaca_nemestrina
ENSKMAG00000011251MSI19484.451ENSMLEG00000003921MSI110084.451Mandrillus_leucophaeus
ENSKMAG00000011251MSI110092.264ENSMAMG00000018426-10092.264Mastacembelus_armatus
ENSKMAG00000011251MSI110097.983ENSMAMG00000002279MSI110097.983Mastacembelus_armatus
ENSKMAG00000011251MSI110098.276ENSMZEG00005000340-10098.276Maylandia_zebra
ENSKMAG00000011251MSI110092.308ENSMZEG00005026892MSI110092.308Maylandia_zebra
ENSKMAG00000011251MSI16393.491ENSMGAG00000016518-10093.491Meleagris_gallopavo
ENSKMAG00000011251MSI17088.889ENSMAUG00000016820Msi110088.889Mesocricetus_auratus
ENSKMAG00000011251MSI110083.702ENSMICG00000033181MSI110083.702Microcebus_murinus
ENSKMAG00000011251MSI110083.425ENSMOCG00000002286Msi110083.425Microtus_ochrogaster
ENSKMAG00000011251MSI19485.933ENSMMOG00000010492MSI19685.933Mola_mola
ENSKMAG00000011251MSI110082.709ENSMMOG00000012265-10082.709Mola_mola
ENSKMAG00000011251MSI19058.133ENSMODG00000003189-10057.530Monodelphis_domestica
ENSKMAG00000011251MSI19492.945ENSMALG00000001426-10092.945Monopterus_albus
ENSKMAG00000011251MSI110098.563ENSMALG00000017889MSI110098.563Monopterus_albus
ENSKMAG00000011251MSI110083.149MGP_CAROLIEiJ_G0027626Msi110083.149Mus_caroli
ENSKMAG00000011251MSI110083.149ENSMUSG00000054256Msi19987.037Mus_musculus
ENSKMAG00000011251MSI110086.000MGP_PahariEiJ_G0024206Msi110086.000Mus_pahari
ENSKMAG00000011251MSI110083.149MGP_SPRETEiJ_G0028624Msi110083.149Mus_spretus
ENSKMAG00000011251MSI19485.209ENSMPUG00000003168MSI110085.209Mustela_putorius_furo
ENSKMAG00000011251MSI19475.893ENSMLUG00000010313MSI110075.893Myotis_lucifugus
ENSKMAG00000011251MSI19484.498ENSNGAG00000014508Msi19184.498Nannospalax_galili
ENSKMAG00000011251MSI15387.912ENSNBRG00000018002zgc:1107969886.957Neolamprologus_brichardi
ENSKMAG00000011251MSI18884.426ENSNBRG00000018012MSI19984.426Neolamprologus_brichardi
ENSKMAG00000011251MSI110098.276ENSNBRG00000000841-10098.276Neolamprologus_brichardi
ENSKMAG00000011251MSI19075.000ENSNLEG00000015636MSI110075.000Nomascus_leucogenys
ENSKMAG00000011251MSI19464.634ENSMEUG00000015759MSI110064.634Notamacropus_eugenii
ENSKMAG00000011251MSI19077.460ENSOPRG00000016879MSI110077.460Ochotona_princeps
ENSKMAG00000011251MSI19484.451ENSODEG00000006328MSI110084.451Octodon_degus
ENSKMAG00000011251MSI110089.011ENSONIG00000019452-10089.011Oreochromis_niloticus
ENSKMAG00000011251MSI110098.276ENSONIG00000011182MSI110098.276Oreochromis_niloticus
ENSKMAG00000011251MSI19485.209ENSOCUG00000027716MSI110085.209Oryctolagus_cuniculus
ENSKMAG00000011251MSI110097.421ENSORLG00000019978-10097.421Oryzias_latipes
ENSKMAG00000011251MSI110091.691ENSORLG00000029593MSI110091.691Oryzias_latipes
ENSKMAG00000011251MSI110097.421ENSORLG00020001208-7197.421Oryzias_latipes_hni
ENSKMAG00000011251MSI110091.691ENSORLG00020008266MSI19987.462Oryzias_latipes_hni
ENSKMAG00000011251MSI110091.691ENSORLG00015003916MSI110091.691Oryzias_latipes_hsok
ENSKMAG00000011251MSI110097.421ENSORLG00015013672-7197.421Oryzias_latipes_hsok
ENSKMAG00000011251MSI110097.421ENSOMEG00000017536MSI110097.421Oryzias_melastigma
ENSKMAG00000011251MSI110091.977ENSOMEG00000002272-10091.977Oryzias_melastigma
ENSKMAG00000011251MSI19981.593ENSOGAG00000003847MSI19981.593Otolemur_garnettii
ENSKMAG00000011251MSI19482.121ENSOARG00000012097MSI110082.121Ovis_aries
ENSKMAG00000011251MSI19484.451ENSPPAG00000043073MSI110084.451Pan_paniscus
ENSKMAG00000011251MSI110083.702ENSPPRG00000000370MSI110083.702Panthera_pardus
ENSKMAG00000011251MSI19485.209ENSPTIG00000008913MSI110085.209Panthera_tigris_altaica
ENSKMAG00000011251MSI110083.702ENSPTRG00000005531MSI110083.702Pan_troglodytes
ENSKMAG00000011251MSI110083.425ENSPANG00000006335MSI110083.425Papio_anubis
ENSKMAG00000011251MSI110093.103ENSPKIG00000016497MSI110093.103Paramormyrops_kingsleyae
ENSKMAG00000011251MSI110092.529ENSPKIG00000023575-10092.529Paramormyrops_kingsleyae
ENSKMAG00000011251MSI17980.702ENSPSIG00000009621-10081.140Pelodiscus_sinensis
ENSKMAG00000011251MSI19486.239ENSPSIG00000011608-9386.239Pelodiscus_sinensis
ENSKMAG00000011251MSI19474.772ENSPMGG00000007743-9868.966Periophthalmus_magnuspinnatus
ENSKMAG00000011251MSI19091.746ENSPMGG00000000514MSI19791.746Periophthalmus_magnuspinnatus
ENSKMAG00000011251MSI19483.086ENSPEMG00000010491Msi19583.086Peromyscus_maniculatus_bairdii
ENSKMAG00000011251MSI110091.714ENSPFOG00000008319-8691.714Poecilia_formosa
ENSKMAG00000011251MSI110097.135ENSPFOG00000013113MSI110097.135Poecilia_formosa
ENSKMAG00000011251MSI110091.714ENSPLAG00000012431-9791.714Poecilia_latipinna
ENSKMAG00000011251MSI110097.135ENSPLAG00000014025-10097.135Poecilia_latipinna
ENSKMAG00000011251MSI110097.135ENSPMEG00000012796MSI110097.135Poecilia_mexicana
ENSKMAG00000011251MSI110091.691ENSPMEG00000007025-8691.691Poecilia_mexicana
ENSKMAG00000011251MSI17684.163ENSPREG00000014574-10084.163Poecilia_reticulata
ENSKMAG00000011251MSI19882.991ENSPREG00000021416-9882.991Poecilia_reticulata
ENSKMAG00000011251MSI15380.220ENSPREG00000020265zgc:1107969174.286Poecilia_reticulata
ENSKMAG00000011251MSI110082.873ENSPPYG00000005027MSI110082.873Pongo_abelii
ENSKMAG00000011251MSI17688.832ENSPCAG00000002300MSI17288.832Procavia_capensis
ENSKMAG00000011251MSI110083.702ENSPCOG00000017341MSI110083.702Propithecus_coquereli
ENSKMAG00000011251MSI19468.902ENSPVAG00000002225MSI110068.902Pteropus_vampyrus
ENSKMAG00000011251MSI110092.308ENSPNYG00000004379MSI110092.308Pundamilia_nyererei
ENSKMAG00000011251MSI110098.276ENSPNYG00000002529-10098.276Pundamilia_nyererei
ENSKMAG00000011251MSI110091.404ENSPNAG00000019337msi110091.404Pygocentrus_nattereri
ENSKMAG00000011251MSI19484.887ENSRNOG00000001156Msi110084.887Rattus_norvegicus
ENSKMAG00000011251MSI19485.209ENSRBIG00000036889MSI110085.209Rhinopithecus_bieti
ENSKMAG00000011251MSI19484.242ENSRROG00000041076MSI19384.242Rhinopithecus_roxellana
ENSKMAG00000011251MSI19485.088ENSSBOG00000030259MSI19985.088Saimiri_boliviensis_boliviensis
ENSKMAG00000011251MSI19475.163ENSSHAG00000006834MSI110075.163Sarcophilus_harrisii
ENSKMAG00000011251MSI19494.512ENSSFOG00015014964-9594.512Scleropages_formosus
ENSKMAG00000011251MSI19493.353ENSSFOG00015005350MSI19693.353Scleropages_formosus
ENSKMAG00000011251MSI19492.720ENSSMAG00000009156-7391.089Scophthalmus_maximus
ENSKMAG00000011251MSI110084.814ENSSMAG00000018824MSI110084.814Scophthalmus_maximus
ENSKMAG00000011251MSI110098.281ENSSDUG00000001027MSI110098.281Seriola_dumerili
ENSKMAG00000011251MSI110092.571ENSSDUG00000022697-10092.571Seriola_dumerili
ENSKMAG00000011251MSI110079.282ENSSLDG00000018706-10079.282Seriola_lalandi_dorsalis
ENSKMAG00000011251MSI110098.281ENSSLDG00000016832MSI110098.281Seriola_lalandi_dorsalis
ENSKMAG00000011251MSI110086.895ENSSPUG00000015741MSI110086.895Sphenodon_punctatus
ENSKMAG00000011251MSI17679.426ENSSPAG00000014085-10079.426Stegastes_partitus
ENSKMAG00000011251MSI15485.625ENSSPAG00000015573zgc:1107968285.625Stegastes_partitus
ENSKMAG00000011251MSI19492.988ENSSPAG00000013098-10092.988Stegastes_partitus
ENSKMAG00000011251MSI110083.425ENSSSCG00000029365MSI110084.887Sus_scrofa
ENSKMAG00000011251MSI19486.176ENSTGUG00000009534MSI110086.176Taeniopygia_guttata
ENSKMAG00000011251MSI15397.753ENSTRUG00000021586-9991.753Takifugu_rubripes
ENSKMAG00000011251MSI18985.771ENSTRUG00000016249MSI110085.771Takifugu_rubripes
ENSKMAG00000011251MSI19481.210ENSTRUG00000015636-7981.210Takifugu_rubripes
ENSKMAG00000011251MSI19962.178ENSTNIG00000019814-9962.178Tetraodon_nigroviridis
ENSKMAG00000011251MSI110093.429ENSTNIG00000011469MSI110093.429Tetraodon_nigroviridis
ENSKMAG00000011251MSI19475.824ENSTBEG00000007182MSI110075.458Tupaia_belangeri
ENSKMAG00000011251MSI17688.346ENSTTRG00000005663MSI17888.346Tursiops_truncatus
ENSKMAG00000011251MSI17187.500ENSUAMG00000015514MSI19487.500Ursus_americanus
ENSKMAG00000011251MSI19481.433ENSUMAG00000006176MSI18881.433Ursus_maritimus
ENSKMAG00000011251MSI19484.498ENSVVUG00000020993MSI110083.784Vulpes_vulpes
ENSKMAG00000011251MSI110086.167ENSXETG00000012216msi110086.167Xenopus_tropicalis
ENSKMAG00000011251MSI19475.535ENSXCOG00000017605MSI18975.535Xiphophorus_couchianus
ENSKMAG00000011251MSI110097.701ENSXMAG00000027103MSI110084.789Xiphophorus_maculatus
ENSKMAG00000011251MSI110091.977ENSXMAG00000018237-10091.977Xiphophorus_maculatus

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