EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000011689 (Gene tree)
Gene ID: 108230487
Gene Symbol: zic1
Alias: odd-paired-like|opl|wu:fj51c06|zgc:136736
Full Name: Zic family member 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 2739 bases
Position: chrLWHD01000008.1:3022208-3024946
Accession: 108230487
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000015616	zf-C2H2	PF00096.26	3.2e-21	1	3
ENSKMAP00000015616	zf-C2H2	PF00096.26	3.2e-21	2	3
ENSKMAP00000015616	zf-C2H2	PF00096.26	3.2e-21	3	3
ENSKMAP00000015635	zf-C2H2	PF00096.26	4.5e-21	1	3
ENSKMAP00000015635	zf-C2H2	PF00096.26	4.5e-21	2	3
ENSKMAP00000015635	zf-C2H2	PF00096.26	4.5e-21	3	3
ENSKMAP00000015635	zf-met	PF12874.7	0.00026	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000015841	-	1545	XM_017406776	ENSKMAP00000015616	440 (aa)	XP_017262265	UPI0007F8C435
ENSKMAT00000015860	-	1008	-	ENSKMAP00000015635	335 (aa)	-	-

Gene Model

Click here to download ENSKMAG00000011689's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000011689's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000011689	zic1	54	43.925	ENSKMAG00000009979	-	63	43.925
ENSKMAG00000011689	zic1	55	39.252	ENSKMAG00000001171	-	74	38.596
ENSKMAG00000011689	zic1	53	48.598	ENSKMAG00000000597	-	95	41.525
ENSKMAG00000011689	zic1	50	37.168	ENSKMAG00000002148	gfi1aa	51	36.283
ENSKMAG00000011689	zic1	58	45.283	ENSKMAG00000002022	-	60	45.283
ENSKMAG00000011689	zic1	51	48.598	ENSKMAG00000002093	-	81	48.598
ENSKMAG00000011689	zic1	67	36.800	ENSKMAG00000006773	-	72	39.474
ENSKMAG00000011689	zic1	54	44.340	ENSKMAG00000019130	-	79	44.340
ENSKMAG00000011689	zic1	55	42.056	ENSKMAG00000004290	-	60	42.202
ENSKMAG00000011689	zic1	66	30.357	ENSKMAG00000009489	-	66	30.556
ENSKMAG00000011689	zic1	79	33.898	ENSKMAG00000001192	-	69	34.270
ENSKMAG00000011689	zic1	60	35.211	ENSKMAG00000020339	-	57	34.437
ENSKMAG00000011689	zic1	55	41.121	ENSKMAG00000021716	-	63	44.554
ENSKMAG00000011689	zic1	53	41.121	ENSKMAG00000000802	-	71	41.228
ENSKMAG00000011689	zic1	56	44.860	ENSKMAG00000000718	-	96	45.977
ENSKMAG00000011689	zic1	50	38.667	ENSKMAG00000004988	-	80	38.158
ENSKMAG00000011689	zic1	55	36.943	ENSKMAG00000003766	-	94	43.902
ENSKMAG00000011689	zic1	62	46.809	ENSKMAG00000000795	-	99	41.176
ENSKMAG00000011689	zic1	52	42.991	ENSKMAG00000013290	-	87	42.991
ENSKMAG00000011689	zic1	55	38.318	ENSKMAG00000008316	-	85	39.130
ENSKMAG00000011689	zic1	56	33.645	ENSKMAG00000007658	-	89	45.455
ENSKMAG00000011689	zic1	64	41.509	ENSKMAG00000000689	-	93	40.517
ENSKMAG00000011689	zic1	61	42.169	ENSKMAG00000000702	-	93	42.169
ENSKMAG00000011689	zic1	56	42.056	ENSKMAG00000016333	-	89	41.509
ENSKMAG00000011689	zic1	50	37.589	ENSKMAG00000008262	-	72	42.105
ENSKMAG00000011689	zic1	50	38.843	ENSKMAG00000006450	-	72	40.367

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000011689	zic1	100	86.353	ENSG00000152977	ZIC1	100	87.248	Homo_sapiens
ENSKMAG00000011689	zic1	94	98.101	ENSACIG00000018732	zic1	93	98.101	Amphilophus_citrinellus
ENSKMAG00000011689	zic1	98	59.474	ENSEBUG00000006709	zic1	100	57.377	Eptatretus_burgeri
ENSKMAG00000011689	zic1	98	59.474	ENSEBUG00000002180	zic1	100	57.377	Eptatretus_burgeri
ENSKMAG00000011689	zic1	78	88.971	ENSFDAG00000013872	ZIC1	100	91.544	Fukomys_damarensis
ENSKMAG00000011689	zic1	69	76.793	ENSOANG00000007365	-	72	77.311	Ornithorhynchus_anatinus
ENSKMAG00000011689	zic1	92	97.436	ENSORLG00020012199	zic1	96	91.553	Oryzias_latipes_hni
ENSKMAG00000011689	zic1	75	92.697	ENSSHAG00000015025	ZIC1	100	92.697	Sarcophilus_harrisii