EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000012023 (Gene tree)
Gene ID: 108240704
Gene Symbol: SMARCAL1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 9445 bases
Position: chrLWHD01000079.1:258608-268052
Accession: 108240704
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000016094	ResIII	PF04851.15	3.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000016324	SMARCAL1-201	4051	XM_017424380	ENSKMAP00000016094	868 (aa)	XP_017279869	UPI0007F8AD83

Gene Model

Click here to download ENSKMAG00000012023's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012023's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012023	SMARCAL1	78	60.176	ENSG00000138375	SMARCAL1	99	63.354	Homo_sapiens
ENSKMAG00000012023	SMARCAL1	99	77.350	ENSAPOG00000020156	SMARCAL1	97	77.350	Acanthochromis_polyacanthus
ENSKMAG00000012023	SMARCAL1	96	73.646	ENSACIG00000001500	smarcal1	97	73.646	Amphilophus_citrinellus
ENSKMAG00000012023	SMARCAL1	99	77.463	ENSAOCG00000014266	SMARCAL1	98	77.463	Amphiprion_ocellaris
ENSKMAG00000012023	SMARCAL1	99	78.029	ENSAPEG00000015861	SMARCAL1	97	78.029	Amphiprion_percula
ENSKMAG00000012023	SMARCAL1	99	74.944	ENSATEG00000020624	SMARCAL1	97	74.832	Anabas_testudineus
ENSKMAG00000012023	SMARCAL1	82	60.809	ENSAPLG00000009864	SMARCAL1	71	62.302	Anas_platyrhynchos
ENSKMAG00000012023	SMARCAL1	88	58.226	ENSACAG00000004612	SMARCAL1	70	63.425	Anolis_carolinensis
ENSKMAG00000012023	SMARCAL1	99	75.538	ENSACLG00000015990	SMARCAL1	97	75.764	Astatotilapia_calliptera
ENSKMAG00000012023	SMARCAL1	99	64.821	ENSAMXG00000003350	smarcal1	96	64.591	Astyanax_mexicanus
ENSKMAG00000012023	SMARCAL1	79	63.439	ENSCPBG00000013599	SMARCAL1	70	63.439	Chrysemys_picta_bellii
ENSKMAG00000012023	SMARCAL1	75	48.154	ENSCING00000009308	-	100	48.154	Ciona_intestinalis
ENSKMAG00000012023	SMARCAL1	99	69.040	ENSCSEG00000010785	SMARCAL1	99	70.193	Cynoglossus_semilaevis
ENSKMAG00000012023	SMARCAL1	99	74.341	ENSCVAG00000018780	SMARCAL1	96	74.341	Cyprinodon_variegatus
ENSKMAG00000012023	SMARCAL1	80	74.462	ENSELUG00000010440	-	67	74.249	Esox_lucius
ENSKMAG00000012023	SMARCAL1	82	61.142	ENSFALG00000003981	SMARCAL1	72	62.572	Ficedula_albicollis
ENSKMAG00000012023	SMARCAL1	99	76.087	ENSFHEG00000008380	SMARCAL1	97	76.087	Fundulus_heteroclitus
ENSKMAG00000012023	SMARCAL1	66	73.759	ENSGMOG00000010034	smarcal1	86	73.759	Gadus_morhua
ENSKMAG00000012023	SMARCAL1	80	61.803	ENSGALG00000011475	RPL37A	72	62.193	Gallus_gallus
ENSKMAG00000012023	SMARCAL1	90	82.056	ENSGACG00000006073	SMARCAL1	100	84.358	Gasterosteus_aculeatus
ENSKMAG00000012023	SMARCAL1	74	64.915	ENSGAGG00000015660	SMARCAL1	71	64.915	Gopherus_agassizii
ENSKMAG00000012023	SMARCAL1	99	74.801	ENSHBUG00000002973	smarcal1	97	75.028	Haplochromis_burtoni
ENSKMAG00000012023	SMARCAL1	98	68.866	ENSHCOG00000017921	smarcal1	98	68.519	Hippocampus_comes
ENSKMAG00000012023	SMARCAL1	93	72.131	ENSLBEG00000003493	smarcal1	100	72.131	Labrus_bergylta
ENSKMAG00000012023	SMARCAL1	96	77.089	ENSLBEG00000022915	smarcal1	99	77.089	Labrus_bergylta
ENSKMAG00000012023	SMARCAL1	99	50.921	ENSLACG00000010974	SMARCAL1	72	60.058	Latimeria_chalumnae
ENSKMAG00000012023	SMARCAL1	96	62.073	ENSLOCG00000009637	smarcal1	99	61.529	Lepisosteus_oculatus
ENSKMAG00000012023	SMARCAL1	99	74.914	ENSMAMG00000000828	SMARCAL1	99	74.914	Mastacembelus_armatus
ENSKMAG00000012023	SMARCAL1	99	75.425	ENSMZEG00005007660	SMARCAL1	97	75.651	Maylandia_zebra
ENSKMAG00000012023	SMARCAL1	96	67.913	ENSMMOG00000003842	smarcal1	93	77.273	Mola_mola
ENSKMAG00000012023	SMARCAL1	99	49.946	ENSMODG00000015544	SMARCAL1	71	60.088	Monodelphis_domestica
ENSKMAG00000012023	SMARCAL1	96	72.410	ENSNBRG00000016273	smarcal1	97	82.430	Neolamprologus_brichardi
ENSKMAG00000012023	SMARCAL1	72	63.016	ENSMEUG00000004395	SMARCAL1	72	62.500	Notamacropus_eugenii
ENSKMAG00000012023	SMARCAL1	99	75.737	ENSONIG00000009036	smarcal1	100	83.480	Oreochromis_niloticus
ENSKMAG00000012023	SMARCAL1	99	75.973	ENSORLG00000016455	SMARCAL1	97	75.629	Oryzias_latipes
ENSKMAG00000012023	SMARCAL1	100	75.482	ENSORLG00020001610	SMARCAL1	97	75.028	Oryzias_latipes_hni
ENSKMAG00000012023	SMARCAL1	100	75.568	ENSORLG00015001865	SMARCAL1	97	75.227	Oryzias_latipes_hsok
ENSKMAG00000012023	SMARCAL1	99	75.917	ENSOMEG00000001845	smarcal1	97	75.573	Oryzias_melastigma
ENSKMAG00000012023	SMARCAL1	99	71.101	ENSPMGG00000019092	SMARCAL1	97	71.216	Periophthalmus_magnuspinnatus
ENSKMAG00000012023	SMARCAL1	91	54.956	ENSPCIG00000022514	SMARCAL1	83	55.482	Phascolarctos_cinereus
ENSKMAG00000012023	SMARCAL1	99	75.968	ENSPFOG00000000560	SMARCAL1	97	75.740	Poecilia_formosa
ENSKMAG00000012023	SMARCAL1	99	75.968	ENSPMEG00000018146	SMARCAL1	97	75.740	Poecilia_mexicana
ENSKMAG00000012023	SMARCAL1	63	85.880	ENSPREG00000009591	SMARCAL1	97	85.880	Poecilia_reticulata
ENSKMAG00000012023	SMARCAL1	99	65.979	ENSPNAG00000014900	smarcal1	91	65.750	Pygocentrus_nattereri
ENSKMAG00000012023	SMARCAL1	99	47.021	ENSSHAG00000013538	SMARCAL1	97	47.826	Sarcophilus_harrisii
ENSKMAG00000012023	SMARCAL1	99	73.855	ENSSMAG00000010427	SMARCAL1	97	73.855	Scophthalmus_maximus
ENSKMAG00000012023	SMARCAL1	99	75.703	ENSSDUG00000017470	SMARCAL1	95	75.703	Seriola_dumerili
ENSKMAG00000012023	SMARCAL1	99	75.393	ENSSLDG00000007224	SMARCAL1	97	75.421	Seriola_lalandi_dorsalis
ENSKMAG00000012023	SMARCAL1	80	64.799	ENSSPUG00000015369	SMARCAL1	69	65.262	Sphenodon_punctatus
ENSKMAG00000012023	SMARCAL1	96	76.867	ENSSPAG00000003742	smarcal1	99	76.867	Stegastes_partitus
ENSKMAG00000012023	SMARCAL1	78	57.164	ENSSSCG00000035501	SMARCAL1	75	57.312	Sus_scrofa
ENSKMAG00000012023	SMARCAL1	81	60.735	ENSTGUG00000005079	SMARCAL1	99	60.735	Taeniopygia_guttata
ENSKMAG00000012023	SMARCAL1	99	63.844	ENSTRUG00000010701	SMARCAL1	98	63.470	Takifugu_rubripes
ENSKMAG00000012023	SMARCAL1	99	44.505	ENSTTRG00000009001	SMARCAL1	95	51.511	Tursiops_truncatus
ENSKMAG00000012023	SMARCAL1	99	55.714	ENSXETG00000000465	smarcal1	73	65.224	Xenopus_tropicalis