EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000012097 (Gene tree)
Gene ID: 108243043
Gene Symbol: -
Alias: -
Full Name: zinc finger protein 554-like
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 9058 bases
Position: chrLWHD01000110.1:917591-926648
Accession: 108243043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000016195	zf-C2H2	PF00096.26	6.7e-21	1	3
ENSKMAP00000016195	zf-C2H2	PF00096.26	6.7e-21	2	3
ENSKMAP00000016195	zf-C2H2	PF00096.26	6.7e-21	3	3
ENSKMAP00000016195	zf-met	PF12874.7	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000016425	-	2479	XM_017428227	ENSKMAP00000016195	426 (aa)	XP_017283716	UPI0007F8761D

Gene Model

Click here to download ENSKMAG00000012097's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012097's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000012097	-	97	46.087	ENSKMAG00000015304	-	99	46.087
ENSKMAG00000012097	-	53	46.875	ENSKMAG00000019130	-	87	46.875
ENSKMAG00000012097	-	80	51.948	ENSKMAG00000021817	znf236	66	51.948
ENSKMAG00000012097	-	83	44.944	ENSKMAG00000000597	-	98	44.944
ENSKMAG00000012097	-	50	47.170	ENSKMAG00000001171	-	91	47.170
ENSKMAG00000012097	-	62	54.054	ENSKMAG00000000402	-	50	54.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012097	-	100	72.028	ENSAPOG00000008360	-	100	72.028	Acanthochromis_polyacanthus
ENSKMAG00000012097	-	100	71.462	ENSAOCG00000010567	-	100	71.462	Amphiprion_ocellaris
ENSKMAG00000012097	-	100	71.462	ENSAPEG00000012300	-	100	71.462	Amphiprion_percula
ENSKMAG00000012097	-	100	64.733	ENSCVAG00000021152	-	100	65.893	Cyprinodon_variegatus
ENSKMAG00000012097	-	100	65.501	ENSFHEG00000014608	-	100	65.501	Fundulus_heteroclitus
ENSKMAG00000012097	-	50	59.184	ENSHCOG00000013256	-	67	59.184	Hippocampus_comes
ENSKMAG00000012097	-	96	44.037	ENSIPUG00000022266	ZNF135	99	44.037	Ictalurus_punctatus
ENSKMAG00000012097	-	97	46.154	ENSPLAG00000013745	-	98	46.154	Poecilia_latipinna
ENSKMAG00000012097	-	97	46.491	ENSSLDG00000025676	-	99	46.491	Seriola_lalandi_dorsalis
ENSKMAG00000012097	-	100	72.897	ENSSPAG00000018010	-	100	72.897	Stegastes_partitus
ENSKMAG00000012097	-	65	54.054	ENSSPAG00000008950	-	54	54.054	Stegastes_partitus