EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000012124 (Gene tree)
Gene ID: 108229879
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 6401 bases
Position: chrLWHD01000007.1:373921-380321
Accession: 108229879
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000016302	PRP4	PF08799.11	1.9e-13	1	1
ENSKMAP00000016280	PRP4	PF08799.11	2.1e-13	1	1
ENSKMAP00000016264	PRP4	PF08799.11	2.2e-13	1	1
ENSKMAP00000016280	Prp18	PF02840.15	8e-63	1	1
ENSKMAP00000016264	Prp18	PF02840.15	8.2e-63	1	1
ENSKMAP00000016302	Prp18	PF02840.15	3.9e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000016493	-	1899	XM_017405589	ENSKMAP00000016264	350 (aa)	XP_017261078	UPI0007F8A739
ENSKMAT00000016532	-	963	-	ENSKMAP00000016302	320 (aa)	-	-
ENSKMAT00000016510	-	1872	XM_017405590	ENSKMAP00000016280	341 (aa)	XP_017261079	UPI0007F8D531

Gene Model

Click here to download ENSKMAG00000012124's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012124's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012124	prpf18	100	83.333	ENSG00000165630	PRPF18	100	83.333	Homo_sapiens
ENSKMAG00000012124	prpf18	100	93.255	ENSAPOG00000024177	prpf18	100	93.255	Acanthochromis_polyacanthus
ENSKMAG00000012124	prpf18	100	82.749	ENSAMEG00000013591	-	100	82.749	Ailuropoda_melanoleuca
ENSKMAG00000012124	prpf18	100	93.255	ENSACIG00000001186	prpf18	100	93.255	Amphilophus_citrinellus
ENSKMAG00000012124	prpf18	98	93.413	ENSAOCG00000006572	prpf18	94	92.982	Amphiprion_ocellaris
ENSKMAG00000012124	prpf18	100	93.548	ENSAPEG00000004564	prpf18	100	93.548	Amphiprion_percula
ENSKMAG00000012124	prpf18	100	92.669	ENSATEG00000000303	prpf18	100	92.669	Anabas_testudineus
ENSKMAG00000012124	prpf18	99	82.647	ENSAPLG00000003387	-	99	82.647	Anas_platyrhynchos
ENSKMAG00000012124	prpf18	100	83.140	ENSACAG00000000818	-	100	83.140	Anolis_carolinensis
ENSKMAG00000012124	prpf18	100	83.041	ENSANAG00000037445	-	100	83.041	Aotus_nancymaae
ENSKMAG00000012124	prpf18	100	92.962	ENSACLG00000026296	prpf18	100	92.962	Astatotilapia_calliptera
ENSKMAG00000012124	prpf18	100	88.857	ENSAMXG00000012848	prpf18	100	88.857	Astyanax_mexicanus
ENSKMAG00000012124	prpf18	100	82.749	ENSBTAG00000017244	PRPF18	100	82.749	Bos_taurus
ENSKMAG00000012124	prpf18	98	40.346	WBGene00009320	F32B6.3	97	40.058	Caenorhabditis_elegans
ENSKMAG00000012124	prpf18	100	83.041	ENSCJAG00000009432	-	100	83.041	Callithrix_jacchus
ENSKMAG00000012124	prpf18	100	82.749	ENSCAFG00000004735	-	100	82.749	Canis_familiaris
ENSKMAG00000012124	prpf18	100	82.749	ENSCAFG00020007712	-	100	82.749	Canis_lupus_dingo
ENSKMAG00000012124	prpf18	100	82.749	ENSCHIG00000000499	-	100	82.749	Capra_hircus
ENSKMAG00000012124	prpf18	100	82.749	ENSTSYG00000003517	-	100	82.749	Carlito_syrichta
ENSKMAG00000012124	prpf18	100	83.333	ENSCPOG00000021069	-	100	83.333	Cavia_porcellus
ENSKMAG00000012124	prpf18	100	83.041	ENSCCAG00000036822	-	100	83.041	Cebus_capucinus
ENSKMAG00000012124	prpf18	100	72.807	ENSCATG00000016633	-	100	72.807	Cercocebus_atys
ENSKMAG00000012124	prpf18	100	82.749	ENSCLAG00000011770	-	100	82.749	Chinchilla_lanigera
ENSKMAG00000012124	prpf18	100	81.766	ENSCSAG00000013109	-	100	81.766	Chlorocebus_sabaeus
ENSKMAG00000012124	prpf18	100	78.652	ENSCPBG00000003100	-	100	79.494	Chrysemys_picta_bellii
ENSKMAG00000012124	prpf18	99	56.268	ENSCING00000020481	-	97	55.043	Ciona_intestinalis
ENSKMAG00000012124	prpf18	99	56.012	ENSCSAVG00000010546	-	99	55.718	Ciona_savignyi
ENSKMAG00000012124	prpf18	100	83.333	ENSCANG00000034900	-	100	83.333	Colobus_angolensis_palliatus
ENSKMAG00000012124	prpf18	100	82.749	ENSCGRG00001023665	Prpf18	100	82.749	Cricetulus_griseus_chok1gshd
ENSKMAG00000012124	prpf18	100	82.749	ENSCGRG00000014690	Prpf18	100	82.749	Cricetulus_griseus_crigri
ENSKMAG00000012124	prpf18	100	89.130	ENSCSEG00000005536	prpf18	100	89.130	Cynoglossus_semilaevis
ENSKMAG00000012124	prpf18	100	94.135	ENSCVAG00000012401	prpf18	100	94.135	Cyprinodon_variegatus
ENSKMAG00000012124	prpf18	100	89.474	ENSDARG00000058306	prpf18	100	89.474	Danio_rerio
ENSKMAG00000012124	prpf18	100	82.749	ENSDNOG00000035607	-	100	82.749	Dasypus_novemcinctus
ENSKMAG00000012124	prpf18	100	82.456	ENSDORG00000000858	Prpf18	100	82.456	Dipodomys_ordii
ENSKMAG00000012124	prpf18	99	51.775	FBgn0027784	Prp18	98	51.775	Drosophila_melanogaster
ENSKMAG00000012124	prpf18	100	74.561	ENSETEG00000015060	-	100	74.561	Echinops_telfairi
ENSKMAG00000012124	prpf18	100	68.300	ENSEBUG00000016502	prpf18	99	67.435	Eptatretus_burgeri
ENSKMAG00000012124	prpf18	100	83.041	ENSEASG00005019373	-	100	83.041	Equus_asinus_asinus
ENSKMAG00000012124	prpf18	100	83.041	ENSECAG00000006997	PRPF18	100	83.041	Equus_caballus
ENSKMAG00000012124	prpf18	75	100.000	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSKMAG00000012124	prpf18	100	88.047	ENSELUG00000022190	prpf18	100	88.047	Esox_lucius
ENSKMAG00000012124	prpf18	100	83.041	ENSFCAG00000004436	-	100	83.041	Felis_catus
ENSKMAG00000012124	prpf18	93	79.692	ENSFALG00000001912	-	97	80.000	Ficedula_albicollis
ENSKMAG00000012124	prpf18	99	57.391	ENSFDAG00000010713	-	97	57.391	Fukomys_damarensis
ENSKMAG00000012124	prpf18	94	85.312	ENSFDAG00000014026	-	100	85.312	Fukomys_damarensis
ENSKMAG00000012124	prpf18	80	95.238	ENSFHEG00000020125	prpf18	98	95.131	Fundulus_heteroclitus
ENSKMAG00000012124	prpf18	99	86.471	ENSGMOG00000012210	prpf18	99	86.471	Gadus_morhua
ENSKMAG00000012124	prpf18	100	83.626	ENSGALG00000043593	-	100	83.626	Gallus_gallus
ENSKMAG00000012124	prpf18	100	94.135	ENSGAFG00000006034	prpf18	100	94.135	Gambusia_affinis
ENSKMAG00000012124	prpf18	100	89.443	ENSGACG00000012232	prpf18	100	89.443	Gasterosteus_aculeatus
ENSKMAG00000012124	prpf18	100	82.164	ENSGAGG00000016878	-	100	82.164	Gopherus_agassizii
ENSKMAG00000012124	prpf18	92	82.278	ENSGGOG00000025188	-	96	82.278	Gorilla_gorilla
ENSKMAG00000012124	prpf18	100	92.962	ENSHBUG00000010264	prpf18	100	92.962	Haplochromis_burtoni
ENSKMAG00000012124	prpf18	100	82.749	ENSHGLG00000018534	PRPF18	100	82.749	Heterocephalus_glaber_female
ENSKMAG00000012124	prpf18	94	85.000	ENSHGLG00100012161	-	98	85.000	Heterocephalus_glaber_male
ENSKMAG00000012124	prpf18	100	92.669	ENSHCOG00000015987	prpf18	100	92.669	Hippocampus_comes
ENSKMAG00000012124	prpf18	100	83.286	ENSIPUG00000007432	prpf18	100	83.286	Ictalurus_punctatus
ENSKMAG00000012124	prpf18	100	82.456	ENSSTOG00000008735	-	100	82.456	Ictidomys_tridecemlineatus
ENSKMAG00000012124	prpf18	100	83.333	ENSJJAG00000024041	-	100	83.333	Jaculus_jaculus
ENSKMAG00000012124	prpf18	100	65.732	ENSJJAG00000015191	-	100	65.732	Jaculus_jaculus
ENSKMAG00000012124	prpf18	98	88.690	ENSLBEG00000028466	prpf18	99	88.427	Labrus_bergylta
ENSKMAG00000012124	prpf18	100	82.749	ENSLACG00000009885	prpf18	100	83.626	Latimeria_chalumnae
ENSKMAG00000012124	prpf18	100	86.550	ENSLOCG00000016736	prpf18	100	86.550	Lepisosteus_oculatus
ENSKMAG00000012124	prpf18	100	83.333	ENSLAFG00000007753	-	100	83.333	Loxodonta_africana
ENSKMAG00000012124	prpf18	100	83.333	ENSMFAG00000000540	-	100	83.333	Macaca_fascicularis
ENSKMAG00000012124	prpf18	100	83.333	ENSMMUG00000015071	PRPF18	99	86.957	Macaca_mulatta
ENSKMAG00000012124	prpf18	100	83.333	ENSMNEG00000024679	-	100	83.333	Macaca_nemestrina
ENSKMAG00000012124	prpf18	100	68.129	ENSMLEG00000031715	-	100	68.129	Mandrillus_leucophaeus
ENSKMAG00000012124	prpf18	100	92.082	ENSMAMG00000006610	prpf18	100	92.082	Mastacembelus_armatus
ENSKMAG00000012124	prpf18	100	92.962	ENSMZEG00005019392	prpf18	100	92.962	Maylandia_zebra
ENSKMAG00000012124	prpf18	100	83.626	ENSMGAG00000005023	-	100	83.626	Meleagris_gallopavo
ENSKMAG00000012124	prpf18	100	83.626	ENSMICG00000006572	-	100	83.626	Microcebus_murinus
ENSKMAG00000012124	prpf18	100	83.333	ENSMOCG00000021468	Prpf18	100	83.333	Microtus_ochrogaster
ENSKMAG00000012124	prpf18	100	92.082	ENSMMOG00000013012	prpf18	100	92.082	Mola_mola
ENSKMAG00000012124	prpf18	100	75.439	ENSMODG00000024043	-	100	75.439	Monodelphis_domestica
ENSKMAG00000012124	prpf18	96	78.402	ENSMODG00000016902	-	92	78.402	Monodelphis_domestica
ENSKMAG00000012124	prpf18	100	84.393	ENSMALG00000005486	prpf18	100	84.682	Monopterus_albus
ENSKMAG00000012124	prpf18	100	82.749	MGP_CAROLIEiJ_G0023143	Prpf18	100	91.781	Mus_caroli
ENSKMAG00000012124	prpf18	100	83.041	ENSMUSG00000039449	Prpf18	100	91.781	Mus_musculus
ENSKMAG00000012124	prpf18	100	83.041	MGP_PahariEiJ_G0019203	Prpf18	100	91.781	Mus_pahari
ENSKMAG00000012124	prpf18	100	82.749	MGP_SPRETEiJ_G0024061	Prpf18	100	91.781	Mus_spretus
ENSKMAG00000012124	prpf18	100	82.456	ENSMPUG00000000938	-	100	82.456	Mustela_putorius_furo
ENSKMAG00000012124	prpf18	100	82.456	ENSMLUG00000009200	-	100	82.456	Myotis_lucifugus
ENSKMAG00000012124	prpf18	68	81.034	ENSNGAG00000023550	-	83	81.034	Nannospalax_galili
ENSKMAG00000012124	prpf18	100	83.333	ENSNGAG00000012500	-	100	83.333	Nannospalax_galili
ENSKMAG00000012124	prpf18	100	92.669	ENSNBRG00000001778	prpf18	100	92.669	Neolamprologus_brichardi
ENSKMAG00000012124	prpf18	100	83.333	ENSNLEG00000012186	-	100	83.333	Nomascus_leucogenys
ENSKMAG00000012124	prpf18	76	72.587	ENSMEUG00000005032	-	75	72.587	Notamacropus_eugenii
ENSKMAG00000012124	prpf18	77	63.774	ENSOPRG00000002153	-	100	63.774	Ochotona_princeps
ENSKMAG00000012124	prpf18	100	83.041	ENSODEG00000003770	-	100	83.041	Octodon_degus
ENSKMAG00000012124	prpf18	98	92.515	ENSONIG00000014854	prpf18	96	92.515	Oreochromis_niloticus
ENSKMAG00000012124	prpf18	100	83.333	ENSOANG00000015404	-	100	83.333	Ornithorhynchus_anatinus
ENSKMAG00000012124	prpf18	100	83.041	ENSOCUG00000027756	-	96	84.098	Oryctolagus_cuniculus
ENSKMAG00000012124	prpf18	100	91.143	ENSORLG00000010293	prpf18	100	91.143	Oryzias_latipes
ENSKMAG00000012124	prpf18	100	91.875	ENSORLG00020001530	prpf18	100	91.875	Oryzias_latipes_hni
ENSKMAG00000012124	prpf18	100	91.202	ENSORLG00015013705	prpf18	100	91.202	Oryzias_latipes_hsok
ENSKMAG00000012124	prpf18	100	92.962	ENSOMEG00000009167	prpf18	100	92.962	Oryzias_melastigma
ENSKMAG00000012124	prpf18	100	82.456	ENSOGAG00000007294	-	100	82.456	Otolemur_garnettii
ENSKMAG00000012124	prpf18	100	81.197	ENSOARG00000006243	-	100	81.197	Ovis_aries
ENSKMAG00000012124	prpf18	100	83.333	ENSPPAG00000041959	-	100	83.333	Pan_paniscus
ENSKMAG00000012124	prpf18	100	83.041	ENSPPRG00000000107	-	100	83.041	Panthera_pardus
ENSKMAG00000012124	prpf18	100	83.041	ENSPTIG00000021094	-	100	83.041	Panthera_tigris_altaica
ENSKMAG00000012124	prpf18	100	83.333	ENSPTRG00000002306	PRPF18	100	83.333	Pan_troglodytes
ENSKMAG00000012124	prpf18	100	83.041	ENSPANG00000023346	-	100	83.041	Papio_anubis
ENSKMAG00000012124	prpf18	100	85.755	ENSPKIG00000014128	prpf18	96	85.755	Paramormyrops_kingsleyae
ENSKMAG00000012124	prpf18	100	82.456	ENSPSIG00000016064	-	100	82.456	Pelodiscus_sinensis
ENSKMAG00000012124	prpf18	100	88.957	ENSPMGG00000016486	prpf18	100	88.957	Periophthalmus_magnuspinnatus
ENSKMAG00000012124	prpf18	100	83.041	ENSPEMG00000013704	Prpf18	100	83.041	Peromyscus_maniculatus_bairdii
ENSKMAG00000012124	prpf18	100	72.286	ENSPMAG00000000204	prpf18	100	72.286	Petromyzon_marinus
ENSKMAG00000012124	prpf18	92	82.595	ENSPCIG00000012963	-	99	82.595	Phascolarctos_cinereus
ENSKMAG00000012124	prpf18	100	93.429	ENSPFOG00000017611	prpf18	100	93.429	Poecilia_formosa
ENSKMAG00000012124	prpf18	100	93.548	ENSPLAG00000000369	prpf18	100	93.548	Poecilia_latipinna
ENSKMAG00000012124	prpf18	100	93.842	ENSPMEG00000005183	prpf18	100	93.842	Poecilia_mexicana
ENSKMAG00000012124	prpf18	100	93.255	ENSPREG00000015232	prpf18	100	93.255	Poecilia_reticulata
ENSKMAG00000012124	prpf18	100	83.041	ENSPPYG00000002101	PRPF18	100	83.041	Pongo_abelii
ENSKMAG00000012124	prpf18	100	65.205	ENSPCAG00000010833	-	100	65.205	Procavia_capensis
ENSKMAG00000012124	prpf18	100	78.299	ENSPCOG00000013057	-	100	78.299	Propithecus_coquereli
ENSKMAG00000012124	prpf18	100	50.877	ENSPVAG00000002947	-	100	50.877	Pteropus_vampyrus
ENSKMAG00000012124	prpf18	100	92.669	ENSPNYG00000003554	prpf18	100	92.669	Pundamilia_nyererei
ENSKMAG00000012124	prpf18	100	87.749	ENSPNAG00000023151	prpf18	100	87.749	Pygocentrus_nattereri
ENSKMAG00000012124	prpf18	100	83.041	ENSRNOG00000018396	Prpf18	100	83.041	Rattus_norvegicus
ENSKMAG00000012124	prpf18	100	84.375	ENSRBIG00000028028	-	100	84.375	Rhinopithecus_bieti
ENSKMAG00000012124	prpf18	100	83.333	ENSRROG00000040695	-	100	83.333	Rhinopithecus_roxellana
ENSKMAG00000012124	prpf18	100	83.041	ENSSBOG00000034482	-	100	83.041	Saimiri_boliviensis_boliviensis
ENSKMAG00000012124	prpf18	100	69.591	ENSSHAG00000009669	-	100	69.591	Sarcophilus_harrisii
ENSKMAG00000012124	prpf18	100	83.333	ENSSHAG00000016463	-	100	83.333	Sarcophilus_harrisii
ENSKMAG00000012124	prpf18	100	85.231	ENSSFOG00015022118	prpf18	100	85.231	Scleropages_formosus
ENSKMAG00000012124	prpf18	77	45.076	ENSSFOG00015021154	-	89	53.333	Scleropages_formosus
ENSKMAG00000012124	prpf18	100	90.323	ENSSMAG00000005308	prpf18	100	90.323	Scophthalmus_maximus
ENSKMAG00000012124	prpf18	100	93.548	ENSSDUG00000015428	prpf18	100	93.548	Seriola_dumerili
ENSKMAG00000012124	prpf18	100	93.255	ENSSLDG00000023989	prpf18	100	93.255	Seriola_lalandi_dorsalis
ENSKMAG00000012124	prpf18	85	70.492	ENSSARG00000005307	-	100	55.263	Sorex_araneus
ENSKMAG00000012124	prpf18	100	83.333	ENSSPUG00000002619	-	100	83.333	Sphenodon_punctatus
ENSKMAG00000012124	prpf18	100	93.255	ENSSPAG00000019502	prpf18	100	93.255	Stegastes_partitus
ENSKMAG00000012124	prpf18	100	83.438	ENSSSCG00000026354	-	100	83.438	Sus_scrofa
ENSKMAG00000012124	prpf18	100	82.749	ENSTGUG00000002286	-	100	82.749	Taeniopygia_guttata
ENSKMAG00000012124	prpf18	100	89.736	ENSTRUG00000011278	prpf18	100	89.736	Takifugu_rubripes
ENSKMAG00000012124	prpf18	100	90.029	ENSTNIG00000000911	prpf18	100	90.029	Tetraodon_nigroviridis
ENSKMAG00000012124	prpf18	83	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSKMAG00000012124	prpf18	100	83.626	ENSTTRG00000011117	PRPF18	100	83.626	Tursiops_truncatus
ENSKMAG00000012124	prpf18	91	85.852	ENSUAMG00000001815	-	93	85.852	Ursus_americanus
ENSKMAG00000012124	prpf18	100	77.778	ENSUMAG00000012329	-	100	77.778	Ursus_maritimus
ENSKMAG00000012124	prpf18	100	77.193	ENSVPAG00000011486	-	100	77.193	Vicugna_pacos
ENSKMAG00000012124	prpf18	100	82.749	ENSVVUG00000005453	-	100	82.749	Vulpes_vulpes
ENSKMAG00000012124	prpf18	100	75.362	ENSXETG00000024057	prpf18	100	75.072	Xenopus_tropicalis
ENSKMAG00000012124	prpf18	100	93.003	ENSXCOG00000020414	prpf18	100	93.003	Xiphophorus_couchianus
ENSKMAG00000012124	prpf18	100	93.548	ENSXMAG00000004713	prpf18	91	93.548	Xiphophorus_maculatus