EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000012250 (Gene tree)
Gene ID: 108237857
Gene Symbol: pop4
Alias: zgc:110597
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 7904 bases
Position: chrLWHD01000049.1:781862-789765
Accession: 108237857
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000016412	UPF0086	PF01868.16	2.8e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000016643	-	2289	XM_017419556	ENSKMAP00000016412	223 (aa)	XP_017275045	UPI0007F8F33A

Gene Model

Click here to download ENSKMAG00000012250's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03008	Ribosome biogenesis in eukaryotes	KEGG
kmr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012250's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012250	pop4	98	59.633	ENSG00000105171	POP4	100	72.917	Homo_sapiens
ENSKMAG00000012250	pop4	93	55.238	ENSAMEG00000003172	-	94	55.238	Ailuropoda_melanoleuca
ENSKMAG00000012250	pop4	98	57.339	ENSAMEG00000018329	-	98	57.798	Ailuropoda_melanoleuca
ENSKMAG00000012250	pop4	99	79.186	ENSACIG00000008358	pop4	99	79.186	Amphilophus_citrinellus
ENSKMAG00000012250	pop4	91	86.634	ENSAOCG00000010116	pop4	98	86.634	Amphiprion_ocellaris
ENSKMAG00000012250	pop4	100	82.143	ENSAPEG00000002829	pop4	94	82.143	Amphiprion_percula
ENSKMAG00000012250	pop4	99	82.805	ENSATEG00000013028	pop4	99	82.805	Anabas_testudineus
ENSKMAG00000012250	pop4	91	62.439	ENSAPLG00000014051	POP4	98	62.255	Anas_platyrhynchos
ENSKMAG00000012250	pop4	99	60.909	ENSANAG00000020295	POP4	99	61.086	Aotus_nancymaae
ENSKMAG00000012250	pop4	100	78.924	ENSACLG00000000526	pop4	100	78.924	Astatotilapia_calliptera
ENSKMAG00000012250	pop4	100	67.265	ENSAMXG00000002899	pop4	100	67.265	Astyanax_mexicanus
ENSKMAG00000012250	pop4	98	60.092	ENSBTAG00000002223	POP4	98	61.009	Bos_taurus
ENSKMAG00000012250	pop4	99	60.000	ENSCJAG00000046750	POP4	97	69.318	Callithrix_jacchus
ENSKMAG00000012250	pop4	81	64.444	ENSCAFG00000007630	POP4	98	65.556	Canis_familiaris
ENSKMAG00000012250	pop4	93	61.538	ENSCHIG00000016743	POP4	94	62.500	Capra_hircus
ENSKMAG00000012250	pop4	98	58.257	ENSTSYG00000003488	POP4	98	58.716	Carlito_syrichta
ENSKMAG00000012250	pop4	98	43.119	ENSCAPG00000011105	POP4	99	43.578	Cavia_aperea
ENSKMAG00000012250	pop4	98	59.633	ENSCPOG00000002992	POP4	98	60.092	Cavia_porcellus
ENSKMAG00000012250	pop4	99	50.455	ENSCCAG00000034244	-	99	50.455	Cebus_capucinus
ENSKMAG00000012250	pop4	99	59.545	ENSCCAG00000020285	-	99	60.000	Cebus_capucinus
ENSKMAG00000012250	pop4	98	61.187	ENSCATG00000036022	POP4	100	73.958	Cercocebus_atys
ENSKMAG00000012250	pop4	98	60.092	ENSCLAG00000013162	POP4	98	61.009	Chinchilla_lanigera
ENSKMAG00000012250	pop4	98	60.550	ENSCSAG00000004868	POP4	99	61.009	Chlorocebus_sabaeus
ENSKMAG00000012250	pop4	98	42.661	ENSCHOG00000002071	POP4	99	43.119	Choloepus_hoffmanni
ENSKMAG00000012250	pop4	99	59.729	ENSCPBG00000016132	POP4	99	59.729	Chrysemys_picta_bellii
ENSKMAG00000012250	pop4	85	32.474	ENSCING00000023871	-	95	32.474	Ciona_intestinalis
ENSKMAG00000012250	pop4	91	63.235	ENSCANG00000005924	POP4	100	63.725	Colobus_angolensis_palliatus
ENSKMAG00000012250	pop4	99	60.909	ENSCGRG00001017185	Pop4	99	61.364	Cricetulus_griseus_chok1gshd
ENSKMAG00000012250	pop4	99	60.909	ENSCGRG00000008155	Pop4	99	61.364	Cricetulus_griseus_crigri
ENSKMAG00000012250	pop4	96	75.814	ENSCSEG00000002946	pop4	97	75.814	Cynoglossus_semilaevis
ENSKMAG00000012250	pop4	100	56.502	ENSCVAG00000018602	POP4	96	56.502	Cyprinodon_variegatus
ENSKMAG00000012250	pop4	99	65.611	ENSDARG00000101472	pop4	99	66.516	Danio_rerio
ENSKMAG00000012250	pop4	99	58.371	ENSDNOG00000047663	POP4	88	58.824	Dasypus_novemcinctus
ENSKMAG00000012250	pop4	78	53.179	ENSDORG00000008577	Pop4	99	54.335	Dipodomys_ordii
ENSKMAG00000012250	pop4	73	31.176	FBgn0035831	CG8038	83	31.176	Drosophila_melanogaster
ENSKMAG00000012250	pop4	98	50.459	ENSETEG00000003607	POP4	99	51.376	Echinops_telfairi
ENSKMAG00000012250	pop4	90	41.038	ENSEBUG00000004305	pop4	92	41.706	Eptatretus_burgeri
ENSKMAG00000012250	pop4	95	45.740	ENSEBUG00000010447	pop4	86	46.396	Eptatretus_burgeri
ENSKMAG00000012250	pop4	99	40.541	ENSEBUG00000008575	pop4	99	40.541	Eptatretus_burgeri
ENSKMAG00000012250	pop4	98	67.308	ENSECAG00000020206	POP4	80	67.308	Equus_caballus
ENSKMAG00000012250	pop4	89	45.729	ENSEEUG00000013109	POP4	99	46.231	Erinaceus_europaeus
ENSKMAG00000012250	pop4	99	66.516	ENSELUG00000019812	pop4	99	66.968	Esox_lucius
ENSKMAG00000012250	pop4	98	59.633	ENSFCAG00000001619	POP4	98	60.092	Felis_catus
ENSKMAG00000012250	pop4	98	59.361	ENSFALG00000000206	POP4	97	60.274	Ficedula_albicollis
ENSKMAG00000012250	pop4	98	59.633	ENSFDAG00000017859	POP4	98	60.092	Fukomys_damarensis
ENSKMAG00000012250	pop4	96	68.692	ENSFHEG00000012745	pop4	96	68.692	Fundulus_heteroclitus
ENSKMAG00000012250	pop4	90	68.500	ENSGMOG00000000335	pop4	99	68.500	Gadus_morhua
ENSKMAG00000012250	pop4	99	58.824	ENSGALG00000041972	POP4	92	59.729	Gallus_gallus
ENSKMAG00000012250	pop4	80	75.978	ENSGAFG00000003571	pop4	99	75.978	Gambusia_affinis
ENSKMAG00000012250	pop4	100	75.336	ENSGACG00000014510	pop4	100	80.978	Gasterosteus_aculeatus
ENSKMAG00000012250	pop4	99	60.181	ENSGAGG00000024544	POP4	79	60.633	Gopherus_agassizii
ENSKMAG00000012250	pop4	98	59.633	ENSGGOG00000038346	POP4	98	60.092	Gorilla_gorilla
ENSKMAG00000012250	pop4	100	78.924	ENSHBUG00000021821	pop4	100	78.924	Haplochromis_burtoni
ENSKMAG00000012250	pop4	98	60.550	ENSHGLG00000015798	POP4	98	61.009	Heterocephalus_glaber_female
ENSKMAG00000012250	pop4	98	60.550	ENSHGLG00100009737	POP4	98	61.009	Heterocephalus_glaber_male
ENSKMAG00000012250	pop4	100	73.543	ENSHCOG00000020937	pop4	100	73.543	Hippocampus_comes
ENSKMAG00000012250	pop4	99	63.348	ENSIPUG00000013652	pop4	99	63.348	Ictalurus_punctatus
ENSKMAG00000012250	pop4	98	61.009	ENSSTOG00000011016	POP4	98	61.468	Ictidomys_tridecemlineatus
ENSKMAG00000012250	pop4	98	60.092	ENSJJAG00000013376	Pop4	98	61.009	Jaculus_jaculus
ENSKMAG00000012250	pop4	100	73.991	ENSLBEG00000018846	-	100	73.991	Labrus_bergylta
ENSKMAG00000012250	pop4	100	73.991	ENSLBEG00000014139	pop4	100	73.991	Labrus_bergylta
ENSKMAG00000012250	pop4	98	55.963	ENSLACG00000008581	POP4	97	56.881	Latimeria_chalumnae
ENSKMAG00000012250	pop4	99	62.896	ENSLOCG00000005597	pop4	99	62.896	Lepisosteus_oculatus
ENSKMAG00000012250	pop4	98	61.468	ENSLAFG00000000084	POP4	98	61.927	Loxodonta_africana
ENSKMAG00000012250	pop4	98	60.550	ENSMFAG00000029606	POP4	98	61.009	Macaca_fascicularis
ENSKMAG00000012250	pop4	98	60.092	ENSMMUG00000017424	POP4	98	61.187	Macaca_mulatta
ENSKMAG00000012250	pop4	98	60.092	ENSMNEG00000031374	POP4	98	61.187	Macaca_nemestrina
ENSKMAG00000012250	pop4	98	60.550	ENSMLEG00000043454	POP4	98	61.644	Mandrillus_leucophaeus
ENSKMAG00000012250	pop4	99	81.900	ENSMAMG00000011716	pop4	99	81.900	Mastacembelus_armatus
ENSKMAG00000012250	pop4	100	78.924	ENSMZEG00005002360	pop4	100	78.924	Maylandia_zebra
ENSKMAG00000012250	pop4	98	59.633	ENSMGAG00000005337	POP4	96	60.550	Meleagris_gallopavo
ENSKMAG00000012250	pop4	99	60.455	ENSMAUG00000020110	Pop4	99	60.455	Mesocricetus_auratus
ENSKMAG00000012250	pop4	98	57.339	ENSMICG00000035730	POP4	97	58.904	Microcebus_murinus
ENSKMAG00000012250	pop4	99	78.733	ENSMMOG00000015321	pop4	99	79.186	Mola_mola
ENSKMAG00000012250	pop4	99	59.276	ENSMODG00000029406	POP4	95	60.633	Monodelphis_domestica
ENSKMAG00000012250	pop4	100	81.166	ENSMALG00000012571	pop4	100	82.511	Monopterus_albus
ENSKMAG00000012250	pop4	99	61.818	MGP_CAROLIEiJ_G0029600	Pop4	99	61.607	Mus_caroli
ENSKMAG00000012250	pop4	99	60.889	ENSMUSG00000030423	Pop4	99	60.889	Mus_musculus
ENSKMAG00000012250	pop4	99	61.364	MGP_SPRETEiJ_G0030699	Pop4	99	62.443	Mus_spretus
ENSKMAG00000012250	pop4	98	60.092	ENSMPUG00000008041	-	98	61.009	Mustela_putorius_furo
ENSKMAG00000012250	pop4	98	52.055	ENSMPUG00000008063	-	98	52.968	Mustela_putorius_furo
ENSKMAG00000012250	pop4	98	45.662	ENSMLUG00000010774	POP4	98	45.662	Myotis_lucifugus
ENSKMAG00000012250	pop4	56	68.000	ENSMEUG00000003636	-	100	68.000	Notamacropus_eugenii
ENSKMAG00000012250	pop4	90	63.000	ENSOPRG00000004736	POP4	99	64.677	Ochotona_princeps
ENSKMAG00000012250	pop4	98	59.174	ENSODEG00000013025	POP4	98	61.722	Octodon_degus
ENSKMAG00000012250	pop4	99	79.186	ENSONIG00000003458	pop4	97	79.186	Oreochromis_niloticus
ENSKMAG00000012250	pop4	92	62.439	ENSOCUG00000015974	POP4	98	60.092	Oryctolagus_cuniculus
ENSKMAG00000012250	pop4	99	76.018	ENSORLG00000020317	pop4	99	76.018	Oryzias_latipes
ENSKMAG00000012250	pop4	100	75.336	ENSORLG00015011624	pop4	100	75.336	Oryzias_latipes_hsok
ENSKMAG00000012250	pop4	100	74.888	ENSOMEG00000002538	pop4	100	74.888	Oryzias_melastigma
ENSKMAG00000012250	pop4	98	60.550	ENSOGAG00000011168	POP4	98	61.644	Otolemur_garnettii
ENSKMAG00000012250	pop4	90	63.000	ENSOARG00000004041	POP4	89	64.322	Ovis_aries
ENSKMAG00000012250	pop4	98	59.633	ENSPPAG00000040372	POP4	98	60.092	Pan_paniscus
ENSKMAG00000012250	pop4	98	59.633	ENSPPRG00000010502	POP4	98	60.092	Panthera_pardus
ENSKMAG00000012250	pop4	98	59.633	ENSPTIG00000016598	POP4	98	60.092	Panthera_tigris_altaica
ENSKMAG00000012250	pop4	98	59.633	ENSPTRG00000010779	POP4	98	60.092	Pan_troglodytes
ENSKMAG00000012250	pop4	98	60.550	ENSPANG00000008546	POP4	98	61.009	Papio_anubis
ENSKMAG00000012250	pop4	91	66.995	ENSPKIG00000004468	pop4	89	66.667	Paramormyrops_kingsleyae
ENSKMAG00000012250	pop4	98	61.009	ENSPSIG00000015690	POP4	100	63.235	Pelodiscus_sinensis
ENSKMAG00000012250	pop4	91	67.805	ENSPMGG00000008608	pop4	98	68.780	Periophthalmus_magnuspinnatus
ENSKMAG00000012250	pop4	99	51.364	ENSPEMG00000019982	-	100	51.818	Peromyscus_maniculatus_bairdii
ENSKMAG00000012250	pop4	99	60.909	ENSPEMG00000014034	-	95	60.909	Peromyscus_maniculatus_bairdii
ENSKMAG00000012250	pop4	65	66.207	ENSPMAG00000006265	pop4	96	56.842	Petromyzon_marinus
ENSKMAG00000012250	pop4	99	60.633	ENSPCIG00000024738	POP4	95	60.633	Phascolarctos_cinereus
ENSKMAG00000012250	pop4	100	74.439	ENSPFOG00000000925	pop4	100	74.439	Poecilia_formosa
ENSKMAG00000012250	pop4	100	73.991	ENSPLAG00000003161	pop4	100	73.991	Poecilia_latipinna
ENSKMAG00000012250	pop4	100	74.439	ENSPMEG00000002475	pop4	100	74.439	Poecilia_mexicana
ENSKMAG00000012250	pop4	99	72.851	ENSPREG00000022403	pop4	93	72.851	Poecilia_reticulata
ENSKMAG00000012250	pop4	98	60.092	ENSPPYG00000009805	POP4	98	60.550	Pongo_abelii
ENSKMAG00000012250	pop4	98	57.339	ENSPCAG00000007737	POP4	98	57.798	Procavia_capensis
ENSKMAG00000012250	pop4	98	58.257	ENSPCOG00000018055	POP4	98	58.716	Propithecus_coquereli
ENSKMAG00000012250	pop4	98	60.909	ENSPVAG00000006069	POP4	98	60.909	Pteropus_vampyrus
ENSKMAG00000012250	pop4	100	78.924	ENSPNYG00000020038	pop4	100	78.924	Pundamilia_nyererei
ENSKMAG00000012250	pop4	99	63.801	ENSPNAG00000005591	pop4	99	63.801	Pygocentrus_nattereri
ENSKMAG00000012250	pop4	99	60.909	ENSRNOG00000027646	Pop4	99	60.714	Rattus_norvegicus
ENSKMAG00000012250	pop4	78	57.143	ENSRBIG00000044769	POP4	84	65.909	Rhinopithecus_bieti
ENSKMAG00000012250	pop4	98	60.550	ENSRROG00000028903	POP4	98	61.009	Rhinopithecus_roxellana
ENSKMAG00000012250	pop4	57	33.094	YBR257W	-	50	33.094	Saccharomyces_cerevisiae
ENSKMAG00000012250	pop4	99	60.633	ENSSBOG00000032445	POP4	99	60.633	Saimiri_boliviensis_boliviensis
ENSKMAG00000012250	pop4	98	59.633	ENSSHAG00000016888	POP4	98	59.633	Sarcophilus_harrisii
ENSKMAG00000012250	pop4	98	63.303	ENSSFOG00015014556	pop4	96	63.303	Scleropages_formosus
ENSKMAG00000012250	pop4	100	82.063	ENSSMAG00000016611	pop4	100	82.063	Scophthalmus_maximus
ENSKMAG00000012250	pop4	100	79.911	ENSSDUG00000019865	pop4	90	79.911	Seriola_dumerili
ENSKMAG00000012250	pop4	100	79.464	ENSSLDG00000001763	pop4	100	79.464	Seriola_lalandi_dorsalis
ENSKMAG00000012250	pop4	98	61.927	ENSSARG00000004748	POP4	99	62.844	Sorex_araneus
ENSKMAG00000012250	pop4	100	84.375	ENSSPAG00000014364	pop4	100	84.375	Stegastes_partitus
ENSKMAG00000012250	pop4	98	59.174	ENSSSCG00000002854	POP4	98	59.633	Sus_scrofa
ENSKMAG00000012250	pop4	91	62.376	ENSTGUG00000008953	POP4	100	63.366	Taeniopygia_guttata
ENSKMAG00000012250	pop4	91	75.490	ENSTNIG00000006401	pop4	100	75.490	Tetraodon_nigroviridis
ENSKMAG00000012250	pop4	98	61.009	ENSTBEG00000002194	POP4	98	61.009	Tupaia_belangeri
ENSKMAG00000012250	pop4	98	57.798	ENSTTRG00000005882	POP4	98	58.257	Tursiops_truncatus
ENSKMAG00000012250	pop4	98	57.339	ENSUAMG00000003049	-	98	57.798	Ursus_americanus
ENSKMAG00000012250	pop4	98	57.339	ENSUMAG00000007522	-	98	57.798	Ursus_maritimus
ENSKMAG00000012250	pop4	90	62.000	ENSVVUG00000016876	-	69	63.000	Vulpes_vulpes
ENSKMAG00000012250	pop4	98	55.505	ENSXETG00000017598	pop4	98	55.963	Xenopus_tropicalis
ENSKMAG00000012250	pop4	99	75.225	ENSXCOG00000017695	pop4	93	75.225	Xiphophorus_couchianus
ENSKMAG00000012250	pop4	99	75.225	ENSXMAG00000013862	pop4	93	75.225	Xiphophorus_maculatus