EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSKMAG00000012642 (Gene tree)
Gene ID: 108231010
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Plus strand
Length: 16554 bases
Position: chrLWHD01000010.1:2537300-2553853
Accession: 108231010
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000016992	rRNA_proc-arch	PF13234.6	3.9e-88	1	1
ENSKMAP00000017012	rRNA_proc-arch	PF13234.6	1.7e-87	1	1
ENSKMAP00000017012	DEAD	PF00270.29	1.2e-16	1	1
ENSKMAP00000016992	DEAD	PF00270.29	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000017249	-	2973	-	ENSKMAP00000017012	990 (aa)	-	-
ENSKMAT00000017229	-	3138	XM_017407766	ENSKMAP00000016992	1034 (aa)	XP_017263255	UPI0007F8C812

Gene Model

Click here to download ENSKMAG00000012642's gene model file

Pathways

Pathway ID	Pathway Name	Source
kmr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012642	mtrex	100	82.555	ENSG00000039123	MTREX	100	82.650	Homo_sapiens
ENSKMAG00000012642	mtrex	100	94.118	ENSAPOG00000007814	mtrex	100	94.118	Acanthochromis_polyacanthus
ENSKMAG00000012642	mtrex	100	82.571	ENSAMEG00000013856	MTREX	100	82.571	Ailuropoda_melanoleuca
ENSKMAG00000012642	mtrex	100	93.207	ENSACIG00000015117	mtrex	100	92.907	Amphilophus_citrinellus
ENSKMAG00000012642	mtrex	100	94.311	ENSAOCG00000011884	mtrex	100	94.311	Amphiprion_ocellaris
ENSKMAG00000012642	mtrex	100	94.407	ENSAPEG00000019384	mtrex	100	94.407	Amphiprion_percula
ENSKMAG00000012642	mtrex	100	93.828	ENSATEG00000015117	mtrex	100	93.828	Anabas_testudineus
ENSKMAG00000012642	mtrex	96	86.354	ENSAPLG00000009694	MTREX	98	85.992	Anas_platyrhynchos
ENSKMAG00000012642	mtrex	100	83.333	ENSACAG00000015200	MTREX	96	83.333	Anolis_carolinensis
ENSKMAG00000012642	mtrex	96	87.043	ENSANAG00000023095	MTREX	100	83.127	Aotus_nancymaae
ENSKMAG00000012642	mtrex	100	93.828	ENSACLG00000001921	mtrex	100	93.828	Astatotilapia_calliptera
ENSKMAG00000012642	mtrex	95	86.032	ENSAMXG00000018751	mtrex	99	85.830	Astyanax_mexicanus
ENSKMAG00000012642	mtrex	100	83.062	ENSBTAG00000010518	MTREX	100	83.048	Bos_taurus
ENSKMAG00000012642	mtrex	93	53.797	WBGene00012342	mtr-4	95	52.449	Caenorhabditis_elegans
ENSKMAG00000012642	mtrex	96	87.043	ENSCJAG00000001773	MTREX	100	82.370	Callithrix_jacchus
ENSKMAG00000012642	mtrex	100	82.745	ENSCAFG00000006818	MTREX	100	82.745	Canis_familiaris
ENSKMAG00000012642	mtrex	100	82.745	ENSCAFG00020024352	MTREX	100	82.745	Canis_lupus_dingo
ENSKMAG00000012642	mtrex	100	82.841	ENSCHIG00000024413	MTREX	100	83.031	Capra_hircus
ENSKMAG00000012642	mtrex	93	84.560	ENSTSYG00000007389	MTREX	100	84.560	Carlito_syrichta
ENSKMAG00000012642	mtrex	87	75.799	ENSCAPG00000008696	MTREX	93	75.571	Cavia_aperea
ENSKMAG00000012642	mtrex	100	82.936	ENSCPOG00000009797	MTREX	100	83.031	Cavia_porcellus
ENSKMAG00000012642	mtrex	100	82.650	ENSCCAG00000014177	MTREX	100	83.031	Cebus_capucinus
ENSKMAG00000012642	mtrex	100	82.745	ENSCATG00000042153	MTREX	100	82.841	Cercocebus_atys
ENSKMAG00000012642	mtrex	100	82.999	ENSCLAG00000006622	MTREX	100	83.031	Chinchilla_lanigera
ENSKMAG00000012642	mtrex	100	79.087	ENSCSAG00000016445	MTREX	100	79.087	Chlorocebus_sabaeus
ENSKMAG00000012642	mtrex	69	97.222	ENSCHOG00000010936	-	70	97.222	Choloepus_hoffmanni
ENSKMAG00000012642	mtrex	100	83.446	ENSCPBG00000026551	MTREX	94	83.446	Chrysemys_picta_bellii
ENSKMAG00000012642	mtrex	99	65.725	ENSCING00000003239	-	99	65.868	Ciona_intestinalis
ENSKMAG00000012642	mtrex	99	65.477	ENSCSAVG00000009304	-	99	69.892	Ciona_savignyi
ENSKMAG00000012642	mtrex	100	82.745	ENSCANG00000035770	MTREX	100	82.745	Colobus_angolensis_palliatus
ENSKMAG00000012642	mtrex	100	82.824	ENSCGRG00001024680	Mtrex	100	82.824	Cricetulus_griseus_chok1gshd
ENSKMAG00000012642	mtrex	100	82.824	ENSCGRG00000000307	Mtrex	100	82.824	Cricetulus_griseus_crigri
ENSKMAG00000012642	mtrex	100	91.418	ENSCSEG00000018621	mtrex	98	91.418	Cynoglossus_semilaevis
ENSKMAG00000012642	mtrex	100	94.208	ENSCVAG00000004556	mtrex	100	94.208	Cyprinodon_variegatus
ENSKMAG00000012642	mtrex	100	86.017	ENSDARG00000013457	mtrex	100	85.824	Danio_rerio
ENSKMAG00000012642	mtrex	100	82.969	ENSDNOG00000015375	MTREX	100	82.969	Dasypus_novemcinctus
ENSKMAG00000012642	mtrex	100	83.286	ENSDORG00000006782	Mtrex	100	83.508	Dipodomys_ordii
ENSKMAG00000012642	mtrex	93	66.773	FBgn0001986	Mtr4	97	62.718	Drosophila_melanogaster
ENSKMAG00000012642	mtrex	90	67.078	ENSETEG00000000727	MTREX	90	66.977	Echinops_telfairi
ENSKMAG00000012642	mtrex	99	73.017	ENSEBUG00000012869	mtrex	99	73.017	Eptatretus_burgeri
ENSKMAG00000012642	mtrex	100	82.713	ENSEASG00005013270	MTREX	100	82.745	Equus_asinus_asinus
ENSKMAG00000012642	mtrex	100	82.808	ENSECAG00000023723	MTREX	100	87.907	Equus_caballus
ENSKMAG00000012642	mtrex	93	86.047	ENSEEUG00000000527	MTREX	94	85.761	Erinaceus_europaeus
ENSKMAG00000012642	mtrex	100	88.016	ENSELUG00000004898	mtrex	100	90.871	Esox_lucius
ENSKMAG00000012642	mtrex	100	82.841	ENSFCAG00000010575	MTREX	100	82.841	Felis_catus
ENSKMAG00000012642	mtrex	100	82.194	ENSFALG00000010850	MTREX	100	82.194	Ficedula_albicollis
ENSKMAG00000012642	mtrex	100	82.555	ENSFDAG00000011199	MTREX	100	82.555	Fukomys_damarensis
ENSKMAG00000012642	mtrex	100	94.112	ENSFHEG00000023014	mtrex	100	91.409	Fundulus_heteroclitus
ENSKMAG00000012642	mtrex	100	85.507	ENSGMOG00000014702	mtrex	100	85.467	Gadus_morhua
ENSKMAG00000012642	mtrex	100	82.997	ENSGALG00000014709	MTREX	86	82.997	Gallus_gallus
ENSKMAG00000012642	mtrex	100	93.822	ENSGAFG00000012425	mtrex	100	93.822	Gambusia_affinis
ENSKMAG00000012642	mtrex	100	87.246	ENSGACG00000016260	mtrex	99	91.304	Gasterosteus_aculeatus
ENSKMAG00000012642	mtrex	100	83.157	ENSGAGG00000020036	MTREX	100	83.157	Gopherus_agassizii
ENSKMAG00000012642	mtrex	100	82.650	ENSGGOG00000001867	MTREX	100	82.745	Gorilla_gorilla
ENSKMAG00000012642	mtrex	100	93.828	ENSHBUG00000006229	mtrex	100	93.828	Haplochromis_burtoni
ENSKMAG00000012642	mtrex	100	82.713	ENSHGLG00000019445	SKIV2L2	100	82.713	Heterocephalus_glaber_female
ENSKMAG00000012642	mtrex	100	82.713	ENSHGLG00100011833	SKIV2L2	100	82.713	Heterocephalus_glaber_male
ENSKMAG00000012642	mtrex	95	89.704	ENSHCOG00000019995	mtrex	100	90.520	Hippocampus_comes
ENSKMAG00000012642	mtrex	100	85.756	ENSIPUG00000024348	skiv2l2	100	85.852	Ictalurus_punctatus
ENSKMAG00000012642	mtrex	100	82.713	ENSSTOG00000010802	MTREX	100	82.841	Ictidomys_tridecemlineatus
ENSKMAG00000012642	mtrex	100	78.386	ENSJJAG00000020975	Mtrex	100	78.032	Jaculus_jaculus
ENSKMAG00000012642	mtrex	100	93.635	ENSLBEG00000019367	mtrex	100	93.635	Labrus_bergylta
ENSKMAG00000012642	mtrex	100	84.200	ENSLACG00000009075	MTREX	100	84.200	Latimeria_chalumnae
ENSKMAG00000012642	mtrex	100	85.975	ENSLOCG00000010186	mtrex	100	85.975	Lepisosteus_oculatus
ENSKMAG00000012642	mtrex	99	80.916	ENSLAFG00000010497	MTREX	100	81.011	Loxodonta_africana
ENSKMAG00000012642	mtrex	100	82.745	ENSMFAG00000031610	MTREX	100	82.841	Macaca_fascicularis
ENSKMAG00000012642	mtrex	100	82.745	ENSMMUG00000010379	MTREX	100	82.493	Macaca_mulatta
ENSKMAG00000012642	mtrex	100	82.745	ENSMNEG00000032746	MTREX	100	82.841	Macaca_nemestrina
ENSKMAG00000012642	mtrex	100	82.745	ENSMLEG00000041051	MTREX	100	82.841	Mandrillus_leucophaeus
ENSKMAG00000012642	mtrex	100	93.021	ENSMAMG00000016753	mtrex	100	93.121	Mastacembelus_armatus
ENSKMAG00000012642	mtrex	100	93.828	ENSMZEG00005000414	mtrex	100	93.828	Maylandia_zebra
ENSKMAG00000012642	mtrex	95	63.224	ENSMGAG00000003980	MTREX	99	61.794	Meleagris_gallopavo
ENSKMAG00000012642	mtrex	100	82.729	ENSMAUG00000010727	Mtrex	100	82.729	Mesocricetus_auratus
ENSKMAG00000012642	mtrex	100	83.127	ENSMICG00000012779	MTREX	100	83.317	Microcebus_murinus
ENSKMAG00000012642	mtrex	100	82.729	ENSMOCG00000019886	Mtrex	100	82.999	Microtus_ochrogaster
ENSKMAG00000012642	mtrex	100	91.352	ENSMMOG00000002476	mtrex	100	91.153	Mola_mola
ENSKMAG00000012642	mtrex	100	83.269	ENSMODG00000019494	MTREX	100	83.269	Monodelphis_domestica
ENSKMAG00000012642	mtrex	100	86.261	ENSMALG00000002917	mtrex	99	89.867	Monopterus_albus
ENSKMAG00000012642	mtrex	100	82.679	MGP_CAROLIEiJ_G0018896	Mtrex	100	82.679	Mus_caroli
ENSKMAG00000012642	mtrex	100	82.871	ENSMUSG00000016018	Mtrex	100	82.871	Mus_musculus
ENSKMAG00000012642	mtrex	100	82.775	MGP_PahariEiJ_G0015967	Mtrex	100	82.775	Mus_pahari
ENSKMAG00000012642	mtrex	100	82.871	MGP_SPRETEiJ_G0019775	Mtrex	100	82.871	Mus_spretus
ENSKMAG00000012642	mtrex	100	82.745	ENSMPUG00000007619	MTREX	100	82.841	Mustela_putorius_furo
ENSKMAG00000012642	mtrex	100	82.078	ENSMLUG00000001152	MTREX	100	82.173	Myotis_lucifugus
ENSKMAG00000012642	mtrex	100	82.729	ENSNGAG00000011938	Mtrex	100	82.936	Nannospalax_galili
ENSKMAG00000012642	mtrex	100	93.925	ENSNBRG00000011293	mtrex	100	93.925	Neolamprologus_brichardi
ENSKMAG00000012642	mtrex	100	78.972	ENSNLEG00000001494	MTREX	100	79.068	Nomascus_leucogenys
ENSKMAG00000012642	mtrex	83	94.118	ENSMEUG00000006496	-	83	94.118	Notamacropus_eugenii
ENSKMAG00000012642	mtrex	100	70.335	ENSOPRG00000008009	MTREX	100	70.257	Ochotona_princeps
ENSKMAG00000012642	mtrex	100	82.330	ENSODEG00000017234	MTREX	100	82.364	Octodon_degus
ENSKMAG00000012642	mtrex	100	93.732	ENSONIG00000007587	mtrex	100	93.732	Oreochromis_niloticus
ENSKMAG00000012642	mtrex	51	82.387	ENSOANG00000004885	-	99	82.364	Ornithorhynchus_anatinus
ENSKMAG00000012642	mtrex	100	83.158	ENSOCUG00000004463	MTREX	100	83.031	Oryctolagus_cuniculus
ENSKMAG00000012642	mtrex	100	92.768	ENSORLG00000005443	mtrex	100	92.768	Oryzias_latipes
ENSKMAG00000012642	mtrex	100	92.671	ENSORLG00020006329	mtrex	100	92.671	Oryzias_latipes_hni
ENSKMAG00000012642	mtrex	100	92.575	ENSORLG00015012924	mtrex	100	92.575	Oryzias_latipes_hsok
ENSKMAG00000012642	mtrex	100	92.878	ENSOMEG00000008825	mtrex	100	92.878	Oryzias_melastigma
ENSKMAG00000012642	mtrex	100	82.808	ENSOGAG00000002886	MTREX	100	83.031	Otolemur_garnettii
ENSKMAG00000012642	mtrex	100	82.605	ENSOARG00000007764	MTREX	100	82.795	Ovis_aries
ENSKMAG00000012642	mtrex	100	82.650	ENSPPAG00000039291	MTREX	100	82.745	Pan_paniscus
ENSKMAG00000012642	mtrex	100	82.841	ENSPPRG00000019701	MTREX	100	82.841	Panthera_pardus
ENSKMAG00000012642	mtrex	100	81.411	ENSPTIG00000009313	MTREX	100	81.411	Panthera_tigris_altaica
ENSKMAG00000012642	mtrex	100	82.650	ENSPTRG00000016878	MTREX	100	82.745	Pan_troglodytes
ENSKMAG00000012642	mtrex	100	82.650	ENSPANG00000009697	MTREX	100	82.745	Papio_anubis
ENSKMAG00000012642	mtrex	100	85.934	ENSPKIG00000020833	mtrex	100	85.645	Paramormyrops_kingsleyae
ENSKMAG00000012642	mtrex	100	83.043	ENSPSIG00000012150	MTREX	100	83.317	Pelodiscus_sinensis
ENSKMAG00000012642	mtrex	100	89.930	ENSPMGG00000002582	mtrex	100	89.930	Periophthalmus_magnuspinnatus
ENSKMAG00000012642	mtrex	95	65.622	ENSPMAG00000009668	mtrex	100	65.521	Petromyzon_marinus
ENSKMAG00000012642	mtrex	95	87.328	ENSPCIG00000024730	MTREX	100	87.290	Phascolarctos_cinereus
ENSKMAG00000012642	mtrex	76	95.807	ENSPFOG00000003141	mtrex	100	95.807	Poecilia_formosa
ENSKMAG00000012642	mtrex	100	94.305	ENSPLAG00000021311	mtrex	100	94.305	Poecilia_latipinna
ENSKMAG00000012642	mtrex	95	96.599	ENSPMEG00000010597	mtrex	99	96.599	Poecilia_mexicana
ENSKMAG00000012642	mtrex	100	94.305	ENSPREG00000003089	mtrex	100	94.305	Poecilia_reticulata
ENSKMAG00000012642	mtrex	98	82.364	ENSPPYG00000015469	MTREX	98	82.461	Pongo_abelii
ENSKMAG00000012642	mtrex	94	73.023	ENSPCAG00000013120	MTREX	94	73.023	Procavia_capensis
ENSKMAG00000012642	mtrex	99	77.824	ENSPCOG00000018092	MTREX	100	77.824	Propithecus_coquereli
ENSKMAG00000012642	mtrex	100	82.745	ENSPVAG00000002445	MTREX	100	82.936	Pteropus_vampyrus
ENSKMAG00000012642	mtrex	100	93.732	ENSPNYG00000006164	mtrex	100	93.732	Pundamilia_nyererei
ENSKMAG00000012642	mtrex	100	86.429	ENSPNAG00000008794	mtrex	100	86.333	Pygocentrus_nattereri
ENSKMAG00000012642	mtrex	99	82.126	ENSRNOG00000010125	Mtrex	97	82.302	Rattus_norvegicus
ENSKMAG00000012642	mtrex	100	80.934	ENSRBIG00000034930	MTREX	100	81.030	Rhinopithecus_bieti
ENSKMAG00000012642	mtrex	100	82.650	ENSRROG00000039895	MTREX	100	82.745	Rhinopithecus_roxellana
ENSKMAG00000012642	mtrex	93	54.927	YJL050W	MTR4	89	54.869	Saccharomyces_cerevisiae
ENSKMAG00000012642	mtrex	96	87.043	ENSSBOG00000026693	MTREX	100	83.127	Saimiri_boliviensis_boliviensis
ENSKMAG00000012642	mtrex	96	86.562	ENSSHAG00000004600	MTREX	99	85.425	Sarcophilus_harrisii
ENSKMAG00000012642	mtrex	100	86.622	ENSSFOG00015014355	skiv2l2	100	86.622	Scleropages_formosus
ENSKMAG00000012642	mtrex	100	93.720	ENSSMAG00000007572	mtrex	100	93.720	Scophthalmus_maximus
ENSKMAG00000012642	mtrex	100	94.600	ENSSDUG00000023789	mtrex	100	94.600	Seriola_dumerili
ENSKMAG00000012642	mtrex	100	94.696	ENSSLDG00000006301	mtrex	100	94.696	Seriola_lalandi_dorsalis
ENSKMAG00000012642	mtrex	95	87.382	ENSSARG00000008387	MTREX	100	81.602	Sorex_araneus
ENSKMAG00000012642	mtrex	89	85.075	ENSSPUG00000007071	MTREX	96	85.075	Sphenodon_punctatus
ENSKMAG00000012642	mtrex	100	92.850	ENSSPAG00000011319	mtrex	100	92.850	Stegastes_partitus
ENSKMAG00000012642	mtrex	100	82.650	ENSSSCG00000016911	MTREX	100	82.841	Sus_scrofa
ENSKMAG00000012642	mtrex	100	81.731	ENSTGUG00000002480	MTREX	100	81.731	Taeniopygia_guttata
ENSKMAG00000012642	mtrex	100	91.691	ENSTRUG00000014571	mtrex	100	91.691	Takifugu_rubripes
ENSKMAG00000012642	mtrex	100	68.607	ENSTBEG00000007769	MTREX	100	68.827	Tupaia_belangeri
ENSKMAG00000012642	mtrex	100	82.775	ENSTTRG00000008678	MTREX	100	82.762	Tursiops_truncatus
ENSKMAG00000012642	mtrex	100	82.617	ENSUAMG00000023061	MTREX	100	82.650	Ursus_americanus
ENSKMAG00000012642	mtrex	100	82.579	ENSUMAG00000009373	MTREX	99	87.771	Ursus_maritimus
ENSKMAG00000012642	mtrex	100	73.403	ENSVPAG00000011174	MTREX	100	73.403	Vicugna_pacos
ENSKMAG00000012642	mtrex	100	82.841	ENSVVUG00000021337	MTREX	100	82.936	Vulpes_vulpes
ENSKMAG00000012642	mtrex	100	84.297	ENSXETG00000032798	MTREX	100	84.297	Xenopus_tropicalis
ENSKMAG00000012642	mtrex	100	94.444	ENSXMAG00000004799	mtrex	100	94.444	Xiphophorus_maculatus