EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSKMAG00000012778 (Gene tree)
Gene ID: 108235338
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: RAB42%2C member RAS oncogene family
Gene Type: protein_coding
Species: Kryptolebias_marmoratus
Status: putative
Strand: Minus strand
Length: 3042 bases
Position: chrLWHD01000034.1:3198458-3201499
Accession: 108235338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSKMAP00000017128	MMR_HSR1	PF01926.23	3.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSKMAT00000017365	-	1947	XM_017415279	ENSKMAP00000017128	222 (aa)	XP_017270768	UPI0007F91EBC

Gene Model

Click here to download ENSKMAG00000012778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSKMAG00000012778's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSKMAG00000012778	si:dkey-34d22.5	72	40.994	ENSKMAG00000020056	rab12	66	40.994
ENSKMAG00000012778	si:dkey-34d22.5	67	39.333	ENSKMAG00000003105	rab33ba	63	39.333
ENSKMAG00000012778	si:dkey-34d22.5	96	33.333	ENSKMAG00000014705	rab22a	98	33.333
ENSKMAG00000012778	si:dkey-34d22.5	74	42.442	ENSKMAG00000017662	rab9a	82	42.442
ENSKMAG00000012778	si:dkey-34d22.5	85	38.144	ENSKMAG00000006593	rab33a	89	38.144
ENSKMAG00000012778	si:dkey-34d22.5	77	42.105	ENSKMAG00000001908	rab13	89	42.105
ENSKMAG00000012778	si:dkey-34d22.5	97	33.482	ENSKMAG00000006170	-	95	33.482
ENSKMAG00000012778	si:dkey-34d22.5	92	32.057	ENSKMAG00000006812	RAB7A	95	32.057
ENSKMAG00000012778	si:dkey-34d22.5	76	40.828	ENSKMAG00000006810	rab1ba	82	40.828
ENSKMAG00000012778	si:dkey-34d22.5	73	35.329	ENSKMAG00000020013	-	79	35.329
ENSKMAG00000012778	si:dkey-34d22.5	72	33.962	ENSKMAG00000020733	rras	79	33.962
ENSKMAG00000012778	si:dkey-34d22.5	74	39.394	ENSKMAG00000018973	-	73	39.394
ENSKMAG00000012778	si:dkey-34d22.5	97	35.909	ENSKMAG00000012657	-	95	35.909
ENSKMAG00000012778	si:dkey-34d22.5	71	42.675	ENSKMAG00000013146	-	80	42.675
ENSKMAG00000012778	si:dkey-34d22.5	86	59.474	ENSKMAG00000008625	RAB39B	88	59.474
ENSKMAG00000012778	si:dkey-34d22.5	80	36.517	ENSKMAG00000015488	rab25b	84	36.517
ENSKMAG00000012778	si:dkey-34d22.5	90	35.122	ENSKMAG00000006082	-	92	35.122
ENSKMAG00000012778	si:dkey-34d22.5	71	31.847	ENSKMAG00000020448	rheb	83	31.847
ENSKMAG00000012778	si:dkey-34d22.5	97	33.784	ENSKMAG00000009033	rab11bb	95	33.784
ENSKMAG00000012778	si:dkey-34d22.5	95	38.571	ENSKMAG00000020250	rab4a	97	38.571
ENSKMAG00000012778	si:dkey-34d22.5	80	35.955	ENSKMAG00000004945	rab25a	82	35.955
ENSKMAG00000012778	si:dkey-34d22.5	60	30.370	ENSKMAG00000007118	arl2	69	30.370
ENSKMAG00000012778	si:dkey-34d22.5	71	37.736	ENSKMAG00000018270	rab23	70	36.842
ENSKMAG00000012778	si:dkey-34d22.5	71	35.443	ENSKMAG00000001922	Ha-ras	88	34.503
ENSKMAG00000012778	si:dkey-34d22.5	98	42.009	ENSKMAG00000017487	rab14	96	42.009
ENSKMAG00000012778	si:dkey-34d22.5	75	35.542	ENSKMAG00000020038	rab5c	86	34.500
ENSKMAG00000012778	si:dkey-34d22.5	67	44.079	ENSKMAG00000020034	-	51	44.079
ENSKMAG00000012778	si:dkey-34d22.5	76	42.012	ENSKMAG00000017357	rab1ab	81	42.012
ENSKMAG00000012778	si:dkey-34d22.5	80	39.894	ENSKMAG00000019964	rab9b	91	39.894
ENSKMAG00000012778	si:dkey-34d22.5	87	31.373	ENSKMAG00000017097	rasl11a	80	31.373
ENSKMAG00000012778	si:dkey-34d22.5	71	33.333	ENSKMAG00000011954	dnajc27	58	33.333
ENSKMAG00000012778	si:dkey-34d22.5	77	42.353	ENSKMAG00000002545	-	77	42.353
ENSKMAG00000012778	si:dkey-34d22.5	86	39.896	ENSKMAG00000015507	rab6ba	89	39.896
ENSKMAG00000012778	si:dkey-34d22.5	77	40.116	ENSKMAG00000003494	si:dkey-16l2.16	80	40.698
ENSKMAG00000012778	si:dkey-34d22.5	72	34.591	ENSKMAG00000003938	kras	88	33.721
ENSKMAG00000012778	si:dkey-34d22.5	96	33.953	ENSKMAG00000017417	-	90	33.953
ENSKMAG00000012778	si:dkey-34d22.5	74	40.588	ENSKMAG00000002862	zgc:101559	71	40.588
ENSKMAG00000012778	si:dkey-34d22.5	77	38.596	ENSKMAG00000011905	rab11a	78	38.596
ENSKMAG00000012778	si:dkey-34d22.5	74	43.605	ENSKMAG00000003646	-	83	43.605
ENSKMAG00000012778	si:dkey-34d22.5	98	55.963	ENSKMAG00000007267	rab42a	99	55.963
ENSKMAG00000012778	si:dkey-34d22.5	95	34.906	ENSKMAG00000011278	rab6bb	94	34.906
ENSKMAG00000012778	si:dkey-34d22.5	77	42.442	ENSKMAG00000006854	rab35b	83	42.442
ENSKMAG00000012778	si:dkey-34d22.5	78	41.379	ENSKMAG00000014038	-	81	41.379
ENSKMAG00000012778	si:dkey-34d22.5	96	33.803	ENSKMAG00000005111	rab5aa	90	33.803
ENSKMAG00000012778	si:dkey-34d22.5	71	35.669	ENSKMAG00000019647	rab34a	59	35.669
ENSKMAG00000012778	si:dkey-34d22.5	79	45.455	ENSKMAG00000020392	rab15	79	45.455
ENSKMAG00000012778	si:dkey-34d22.5	74	34.545	ENSKMAG00000012723	rabl2	70	34.545
ENSKMAG00000012778	si:dkey-34d22.5	71	32.911	ENSKMAG00000019397	rhebl1	84	32.911
ENSKMAG00000012778	si:dkey-34d22.5	94	39.234	ENSKMAG00000009856	zgc:171927	91	39.234
ENSKMAG00000012778	si:dkey-34d22.5	75	44.910	ENSKMAG00000007364	rab18b	80	44.910
ENSKMAG00000012778	si:dkey-34d22.5	95	30.806	ENSKMAG00000019341	rab34b	81	30.806
ENSKMAG00000012778	si:dkey-34d22.5	70	31.410	ENSKMAG00000017893	mras	79	31.548
ENSKMAG00000012778	si:dkey-34d22.5	77	37.427	ENSKMAG00000015516	rab11al	78	37.427
ENSKMAG00000012778	si:dkey-34d22.5	75	44.910	ENSKMAG00000004439	rab30	80	44.910
ENSKMAG00000012778	si:dkey-34d22.5	76	32.749	ENSKMAG00000017150	-	76	32.749
ENSKMAG00000012778	si:dkey-34d22.5	75	32.738	ENSKMAG00000003080	si:cabz01085950.1	82	32.738
ENSKMAG00000012778	si:dkey-34d22.5	76	41.667	ENSKMAG00000001191	RAB15	78	41.667
ENSKMAG00000012778	si:dkey-34d22.5	81	36.066	ENSKMAG00000021039	si:dkey-13a21.4	74	36.066
ENSKMAG00000012778	si:dkey-34d22.5	97	37.500	ENSKMAG00000009799	rab2a	99	37.500
ENSKMAG00000012778	si:dkey-34d22.5	75	32.164	ENSKMAG00000000984	rasd4	78	32.164
ENSKMAG00000012778	si:dkey-34d22.5	93	44.712	ENSKMAG00000011301	-	94	44.712
ENSKMAG00000012778	si:dkey-34d22.5	56	30.667	ENSKMAG00000015464	rabl3	75	30.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSKMAG00000012778	si:dkey-34d22.5	100	86.486	ENSACIG00000016958	si:dkey-34d22.5	100	86.486	Amphilophus_citrinellus
ENSKMAG00000012778	si:dkey-34d22.5	100	86.036	ENSATEG00000010784	si:dkey-34d22.5	86	86.036	Anabas_testudineus
ENSKMAG00000012778	si:dkey-34d22.5	89	65.990	ENSCPBG00000011236	-	90	65.990	Chrysemys_picta_bellii
ENSKMAG00000012778	si:dkey-34d22.5	100	76.126	ENSCSEG00000019183	si:dkey-34d22.5	100	76.126	Cynoglossus_semilaevis
ENSKMAG00000012778	si:dkey-34d22.5	100	86.937	ENSCVAG00000017064	si:dkey-34d22.5	100	86.937	Cyprinodon_variegatus
ENSKMAG00000012778	si:dkey-34d22.5	83	51.351	ENSDARG00000100379	si:dkey-34d22.2	99	51.351	Danio_rerio
ENSKMAG00000012778	si:dkey-34d22.5	86	64.062	ENSFALG00000001373	-	89	64.062	Ficedula_albicollis
ENSKMAG00000012778	si:dkey-34d22.5	100	88.341	ENSFHEG00000012041	si:dkey-34d22.5	100	88.341	Fundulus_heteroclitus
ENSKMAG00000012778	si:dkey-34d22.5	96	58.879	ENSGALG00000000994	-	95	58.879	Gallus_gallus
ENSKMAG00000012778	si:dkey-34d22.5	100	86.937	ENSGAFG00000008183	si:dkey-34d22.5	100	86.937	Gambusia_affinis
ENSKMAG00000012778	si:dkey-34d22.5	93	59.716	ENSGAGG00000004918	-	99	59.716	Gopherus_agassizii
ENSKMAG00000012778	si:dkey-34d22.5	99	74.661	ENSHCOG00000015692	si:dkey-34d22.5	99	74.661	Hippocampus_comes
ENSKMAG00000012778	si:dkey-34d22.5	99	83.258	ENSLBEG00000002926	si:dkey-34d22.5	100	83.258	Labrus_bergylta
ENSKMAG00000012778	si:dkey-34d22.5	88	63.776	ENSLACG00000012674	si:dkey-34d22.5	92	63.776	Latimeria_chalumnae
ENSKMAG00000012778	si:dkey-34d22.5	98	69.585	ENSLOCG00000003467	si:dkey-34d22.5	98	71.429	Lepisosteus_oculatus
ENSKMAG00000012778	si:dkey-34d22.5	100	82.883	ENSMMOG00000006846	si:dkey-34d22.5	100	82.883	Mola_mola
ENSKMAG00000012778	si:dkey-34d22.5	100	84.234	ENSMALG00000013152	si:dkey-34d22.5	100	84.234	Monopterus_albus
ENSKMAG00000012778	si:dkey-34d22.5	99	87.330	ENSORLG00000014099	si:dkey-34d22.5	99	87.330	Oryzias_latipes
ENSKMAG00000012778	si:dkey-34d22.5	99	86.878	ENSORLG00020020277	si:dkey-34d22.5	99	86.878	Oryzias_latipes_hni
ENSKMAG00000012778	si:dkey-34d22.5	99	87.330	ENSORLG00015000142	si:dkey-34d22.5	99	87.330	Oryzias_latipes_hsok
ENSKMAG00000012778	si:dkey-34d22.5	91	91.089	ENSOMEG00000017958	si:dkey-34d22.5	99	87.783	Oryzias_melastigma
ENSKMAG00000012778	si:dkey-34d22.5	99	74.545	ENSPKIG00000021209	si:dkey-34d22.5	99	74.545	Paramormyrops_kingsleyae
ENSKMAG00000012778	si:dkey-34d22.5	89	65.482	ENSPSIG00000006606	-	97	65.482	Pelodiscus_sinensis
ENSKMAG00000012778	si:dkey-34d22.5	99	83.710	ENSPMGG00000001298	-	99	83.710	Periophthalmus_magnuspinnatus
ENSKMAG00000012778	si:dkey-34d22.5	91	62.562	ENSPCIG00000022399	-	90	62.562	Phascolarctos_cinereus
ENSKMAG00000012778	si:dkey-34d22.5	100	87.387	ENSPFOG00000014499	si:dkey-34d22.5	100	87.387	Poecilia_formosa
ENSKMAG00000012778	si:dkey-34d22.5	100	87.387	ENSPLAG00000007773	si:dkey-34d22.5	100	87.387	Poecilia_latipinna
ENSKMAG00000012778	si:dkey-34d22.5	100	87.387	ENSPMEG00000012932	si:dkey-34d22.5	100	87.387	Poecilia_mexicana
ENSKMAG00000012778	si:dkey-34d22.5	94	60.577	ENSSHAG00000008520	-	93	60.577	Sarcophilus_harrisii
ENSKMAG00000012778	si:dkey-34d22.5	99	69.406	ENSSFOG00015012088	rab42	98	69.406	Scleropages_formosus
ENSKMAG00000012778	si:dkey-34d22.5	100	89.640	ENSSLDG00000002646	si:dkey-34d22.5	100	89.640	Seriola_lalandi_dorsalis
ENSKMAG00000012778	si:dkey-34d22.5	99	90.498	ENSSPAG00000012955	si:dkey-34d22.5	99	90.498	Stegastes_partitus
ENSKMAG00000012778	si:dkey-34d22.5	79	56.000	ENSXETG00000020622	rab39a	84	56.000	Xenopus_tropicalis
ENSKMAG00000012778	si:dkey-34d22.5	100	86.486	ENSXCOG00000008410	si:dkey-34d22.5	100	86.486	Xiphophorus_couchianus
ENSKMAG00000012778	si:dkey-34d22.5	100	86.486	ENSXMAG00000029317	si:dkey-34d22.5	100	86.486	Xiphophorus_maculatus